These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1351 fasta sequence [GCTTTTGGTGGCACCGACTCGCACAACCACACAAGATTACAAGGAGAGTGGCACATGAAACTGCCGGCAGCTGTCCAATGTATCTTGGATTCTGCTGCCACAATTTTCTGTGCTATCTTCATGGCGTCTCCAGCTCAAAGTACTAACAATTTCTTTGTACTTTGGACTATTTTAGTATTGTACTGGAAGAGGTACGCGACAGCATCGTGTTCATCCTGGGCAAGGCACCCGTGAATCTTGTCTTGGATTTTTTTAAAACAAAACAGCCTGCAGGGGTCGTCTCCCATATTCTCACCACCTTCTTGTTCCTGGAGAACCTCCTCTCCAGCTCTGTCCAAGCATCAATTCTCTTTCTTTTGCTTCCTGCTGATACCTTTGATCCTGAGCAGAAGAAGCTGCAGAAGTGGGTTAAGGCAGGAAGAGCCATGAACAACGAATTTGATTACCTGTTCAAGCTGCTCCTCATCGGCGACTCCTCGGTCGGCAAGTCATGCTTCCTCCTCCGATTCGCGGACGACTCCTACGTCGACAGCTACATCAGCACGATCGGTGTTGACTTCAAGATTCGCACGATCGAGATGGACGGGAAGACCATCAAGCTGCAGATCTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTC-GAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAAGCAAAAATCTGGGAGCCAGGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAACAGCCACAGAAGAGCAGCTGTTGTTCATCGTGATGGCACAATGGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGTCTGAAAGGTCAATTTACACATGCAAAATAATGCACAGATGCAAATGCATATATTTTTTCCCTAAAAAAAAG] [+] EMBL AK060839 [GCTTTTGGTGGCACCGACTCGCACAACCACACAAGATTACAAGGAGAGTGGCACATGAAACTGCCGGCAGCTGTCCAATGTATCTTGGATTCTGCTGCCACAATTTTCTGTGCTATCTTCATGGCGTCTCCAGCTCAAAGTACTAACAATTTCTTTGTACTTTGGACTATTTTAGTATTGTACTGGAAGAGGTACGCGACAGCATCGTGTTCATCCTGGGCAAGGCACCCGTGAATCTTGTCTTGGATTTTTTTAAAACAAAACAGCCTGCAGGGGTCGTCTCCCATATTCTCACCACCTTCTTGTTCCTGGAGAACCTCCTCTCCAGCTCTGTCCAAGCATCAATTCTCTTTCTTTTGCTTCCTGCTGATACCTTTGATCCTGAGCAGAAGAAGCTGCAGAAGTGGGTTAAGGCAGGAAGAGCCATGAACAACGAATTTGATTACCTGTTCAAGCTGCTCCTCATCGGCGACTCCTCGGTCGGCAAGTCATGCTTCCTCCTCCGATTCGCGGACGACTCCTACGTCGACAGCTACATCAGCACGATCGGTGTTGACTTCAAGATTCGCACGATCGAGATGGACGGGAAGACCATCAAGCTGCAGATCTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTC GAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAAGCAAAAATCTGGGAGCCAGGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAACAGCCACAGAAGAGCAGCTGTTGTTCATCGTGATGGCACAATGGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGTCTGAAAGGTCAATTTACACATGCAAAATAATGCACAGATGCAAATGCATATA ] [-] EMBL CF334572 [ GTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTCNGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAGGCAAAAATCTGGGAGCCAGGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAGCAGCCACAGAAGAGCAGCTGTTGTTCATCGTGATGGCACAATGGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGTCTGAAAGGTCAATTTACACATGCAAAATAATGCACAGATGCAAATGCATATATTTTTTCCCTAAAAAAAAG] consensusID : consensus_7239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 782 fasta sequence [CGGATATACGAGACGACGGACGTGTCGACGTCGCCGCCGGCGATGGCCAGCTCCTCGCCCGTACCGCCGCCGCGTTTTTTCCCGGGCTCCGGCGACGTCGGGCGGAGTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAGGCAAAAATCTGGGAGCCAGGCAGCCCTGGAAAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAGCAGCCACAGAAGAAGCAGCTGTTGTTCATTCGTGATGGCACAATGGGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGT] [+] EMBL CF334571 [CGGATATACGAGACGACGGACGTGTCGACGTCGCCGCCGGCGATGGCCAGCTCCTCGCCCGTACCGCCGCCGCGTTTTTTCCCGGGCTCCGGCGACGTCGGGCGGAGTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAGGCAAAAATCTGGGAGCCAGGCAGCCCTGGAAAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAGCAGCCACAGAAGAAGCAGCTGTTGTTCATTCGTGATGGCACAATGGGTCTGGCATCTTCCATGAATTG ] [+] EMBL AK099486 [ CGACGGACGTGTCGACGTCGCCGCCGGCGATGGCCAGCTCCTCGCCCGTACCGCCGCCGCGTTTTTTCCCGGGCTCCGGCGACGTCGGGCGGAGTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAAGCAAAAATCTGGGAGCCAGGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAGCAGCCACAGAAG AGCAGCTGTTGTTCA TCGTGATGGCACAAT GGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7239#0 GCTTTTGGTGGCACCGACTCGCACAACCACACAAGATTACAAGGAGAGTGGCACATGAAA 60 consensus_7239#1 ------------------------------------------------------------ consensus_7239#0 CTGCCGGCAGCTGTCCAATGTATCTTGGATTCTGCTGCCACAATTTTCTGTGCTATCTTC 120 consensus_7239#1 ------------------------------------------------------------ consensus_7239#0 ATGGCGTCTCCAGCTCAAAGTACTAACAATTTCTTTGTACTTTGGACTATTTTAGTATTG 180 consensus_7239#1 ------------------------------------------------------------ consensus_7239#0 TACTGGAAGAGGTACGCGACAGCATCGTGTTCATCCTGGGCAAGGCACCCGTGAATCTTG 240 consensus_7239#1 ------------------------------------------------------------ consensus_7239#0 TCTTGGATTTTTTTAAAACAAAACAGCCTGCAGGGGTCGTCTCCCATATTCTCACCACCT 300 consensus_7239#1 ------------------------------------------------------------ consensus_7239#0 TCTTGTTCCTGGAGAACCTCCTCTCCAGCTCTGTCCAAGCATCAATTCTCTTTCTTTTGC 360 consensus_7239#1 ------------------------------------------------------------ consensus_7239#0 TTCCTGCTGATACCTTTGATCCTGAGCAGAAGAAGCTGCAGAAGTGGGTTAAGGCAGGAA 420 consensus_7239#1 ------------------------------------------------------------ consensus_7239#0 GAGCCATGAACAACGAATTTGATTACCTGTTCAAGCTGCTCCTCATCGGCGACTCCTCGG 480 consensus_7239#1 ------------------------------------------------------------ consensus_7239#0 TCGGCAAGTCATGCTTCCTCCTCCGATTCGCG-GACGACTCCTACGTCGACAGCTACATC 539 consensus_7239#1 ----------------------CGGATATACGAGACGACGGACGTGTCGACGTCGCCGCC 38 * *** ** ****** ****** * * * consensus_7239#0 AGC-ACGATCGGTG--TTGACTTCAAGATTCGCACGATCGAGAT-GGACGGGAAGACCAT 595 consensus_7239#1 GGCGATGGCCAGCTCCTCGCCCGTACCGCCGCCGCGTTTTTTCCCGGGCTCCGGCGACGT 98 ** * * * * * * * * * ** * ** * * * consensus_7239#0 CAAGCTGCAGATCTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTA 655 consensus_7239#1 CGGGC----GGAGTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTA 154 * ** * *********************************************** consensus_7239#0 CTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAA 715 consensus_7239#1 CTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAA 214 ************************************************************ consensus_7239#0 CAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCT 775 consensus_7239#1 CAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCT 274 ************************************************************ consensus_7239#0 TCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACA 835 consensus_7239#1 TCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACA 334 ************************************************************ consensus_7239#0 GGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAA 895 consensus_7239#1 GGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAA 394 ************************************************************ consensus_7239#0 TGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAAGCAAAAATCTGGGAGCCA 955 consensus_7239#1 TGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAGGCAAAAATCTGGGAGCCA 454 ***************************************** ****************** consensus_7239#0 GGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCA 1015 consensus_7239#1 GGCAGCCCTGGAAAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCA 514 ************ *********************************************** consensus_7239#0 ACAGCAACAGCCACAGAAGA-GCAGCTGTTGTTCAT-CGTGATGGCACAATGG-TCTGGC 1072 consensus_7239#1 ACAGCAGCAGCCACAGAAGAAGCAGCTGTTGTTCATTCGTGATGGCACAATGGGTCTGGC 574 ****** ************* *************** **************** ****** consensus_7239#0 ATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCA 1132 consensus_7239#1 ATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCA 634 ************************************************************ consensus_7239#0 TAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAG 1192 consensus_7239#1 TAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAG 694 ************************************************************ consensus_7239#0 AACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCA 1252 consensus_7239#1 AACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCA 754 ************************************************************ consensus_7239#0 TATTTAATAGATACATGTAGTTTCCAGTCTGAAAGGTCAATTTACACATGCAAAATAATG 1312 consensus_7239#1 TATTTAATAGATACATGTAGTTTCCAGT-------------------------------- 782 **************************** consensus_7239#0 CACAGATGCAAATGCATATATTTTTTCCCTAAAAAAAAG 1351 consensus_7239#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||