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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2400 fasta sequence
[TGGACTGAAGGAGTAGAAACTTTTTTCTCGAGGGTTGGATAAAAGCATAAACCTCACTTCCAACGGAAACCTCGAGAGCGCTCTCTCGCTCGCCCATACTCTCCTCCGCCGCGTCTCCATCCTCTCCTCGCCGCCGCCGCCGTCGTATTCTCCTCCGTTCCGCTCCACCACTCCGGCGGACCAGCCATGGAGGAGTACCTGGCTAACATGAAGACCCTCCGCTCCTACATGAGCGATCTGGAGGAGGAAGCGACGAAGCGGTCGGCGGAGGAGCAGCGGCAGCGCACTGCCATCGACGCCCACGGCGCCGACCTCGCCCAAGTGAGGGCGCAGACGAAGCAGGCTAGCGAGGAGTCCGAGCAGCTTTCGAAGGCGAGGGCGGAGCCCTGCGTAGAGATATCCGAGAAGCAGGGCAGGATTGCCACGCTGGAGATTGAGTGCGCCACGCTGAAGCAGACCTTGGAGCTCCTCCATCAGGAAATCGCAAGTACTTCTTCAAAACTCATTGAGAAAAGATTGTTCTACACAAAGACAATAGAAAGCCTGACGGTCAAATTACAAGAGCAACAGGAATGGCTTGGTGCATTTAAGCTTAAGGTTGAAGAGTCTCAGAGCAAGCAAAACCTTCAAGGTACAGCTCTTCTGAATATGAAGTGAAATAAATAGTGGCTCCAATGCTATTTTTTCCTATCTTACTTAAGTCCTTTCATGGGTTTTCTGTATCCATGTTGGTAAGCGTCAATATGTGGTATGTTGATTGTGCAGTTTTTTTTTTTCATTATATAGTTGAAACATGTTATTGTGCAGTCCAGTCAGTTCTAATTGCATCAATCTGTGTTTCTGAGTTAGCTACCATGAAAGGTGCTGAGGAAGGCCATGAAGCAAAGCAGACTGCATGCTTTTAATATGTGCATGCCCTACACAAGTACACATATGACATATGACAAATGCATTTGCACTGATTGCAATTCTTGGAAGTTGGGGGCATGAGTTACACTTCCTGGCTCAATCTGTGAAATTTCAGACTTGTAGATTTATTATGCACATGTGGATTAGAACTAAAAGCTGTTATACTTTGACTTTGGTAGTATCAAAGGAGGAGCCGATGTGCAGCTGCACCAGTTCAGGCTTTGTGTGGAAGTGGCACCAATTGATAAGAAGATATCTGGATTCTGGAGACTTCTATAAATTGCATAGCATTTCTATCTAAAAGTTGGCATGAAATTTAGATACCTAAATTAATATTTGATTACTATACGTAGCTTAGATTATTAGGAAGCCGACCTTGTATAAAGAGGGATCAGGTTAAGTGTTGATCAAGAAGGAATAGCGAAGTCCATTCTCCTATGTATTCAGCTCAGGCATATGCACCTGCCCTTTTCTGGCCAAACCACTGTTTATTCTAGAAATCATTGATTGATGAGGTCCTCCCCCACTCATTTTTGCATCATATGCTCTCTTTACAAAGGCTATAACAAAATCATATAATGTTTATTTACATATCTAACTAATTCCTCCTTTTTGATTAACTGGTGAGCATGGAGTAGAAGTTTCTGCAATCTTCTTTTCTGGACAGTCTTCCTCACCACCCTCCCTCCCAGAGTCTCAGTACAGTGCCAACCTTTGTTAATCTAAAAGCACCAATTGATATGGACAAAGCCATGGAATACTTAACTCATGTGGGAGCCTAGATAAGGGAAATGACATTGGAAGCAAGCAAGGAGAACTCAGGATTCAACTGGAGTCAACTAAACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGAAATCAGCGAAGTACTCCAATTCTGACACCCATCCTTAGATCTATGACATCTGCAAGTTGTATTATGCCTATTTTTGGGTGAAACTGAAAGGATTATGTCTTTACTTTTCAGAGTAAGCAGGTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGATATGAAATCCTTAGAGGAGG-AACACAAAGCTCTACAAGC-TGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTG-AAGAACGTATA-AATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGATTGGAGTACAAGGTCGAACTAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATGACGTCTAGTCGTCTACCAGTGGAAAGAGATACTAAATTGCATAAGCTAGAACATTGTCAATGAAGTTATCCAGAGTAGATTATATTCATTGGAGAGATGTAACTGGTTGAGATAAGCTAAAATTTAAAAAAAAA]
[+] EMBL CF292691 [TGGACTGAAGGAGTAGAAACTTTTTTCTCGAGGGTTGGATAAAAGCATAAACCTCACTTCCAACGGAAACCTCGAGAGCGCTCTCTCGCTCGCCCATACTCTCCTCCGCCGCGTCTCCATCCTCTCCTCGCCGCCGCCGCCGTCGTATTCTCCTCCGTTCCGCTCCACCACTCCGGCGGACCAGCCATGGAGGAGTACCTGGCTAACATGAAGACCCTCCGCTCCTACATGAGCGATCTGGAGGAGGAAGCGACGAAGCGGTCGGCGGAGGAGCAGCGGCAGCGCACTGCCATCGACGCCCACGGCGCCGACCTCGCCCAAGTGAGGGCGCAGACGAAGCAGGCTAGCGAGGAGTCCGAGCAGCTTTCGAAGGCGAGGGCGGAGCCCTGCGTAGAGATATCCGAGAAGCAGGGCAGGATTGCCACGCTGGAGATTGAGTGCGCCACGCTGAAGCAGACCTTGGAGCTCCTCCATCAGGAAATCGCAAGTACTTCTTCAAAACTCATTGAGAAAAGATTGTTCTACACAAAGACAATAGAAAGCCTGACGGTCAAATTACAAGAGCAACAGGAATGGCTTGGTGCATTTAAGCTTAAGGTTGAAGAGTCTCA ]
[+] EMBL AK069354 [ TTCTCGAGGGTTGGATAAAAGCATAAACCTCACTTCCAACGGAAACCTCGAGAGCGCTCTCTCGCTCGCCCATACTCTCCTCCGCCGCGTCTCCATCCTCTCCTCGCCGCCGCCGCCGTCGTATTCTCCTCCGTTCCGCTCCACCACTCCGGCGGACCAGCCATGGAGGAGTACCTGGCTAACATGAAGACCCTCCGCTCCTACATGAGCGATCTGGAGGAGGAAGCGACGAAGCGGTCGGCGGAGGAGCAGCGGCAGCGCACTGCCATCGACGCCCACGGCGCCGACCTCGCCCAAGTGAGGGCGCAGACGAAGCAGGCTAGCGAGGAGTCCGAGCAGCTTTCGAAGGCGAGGGCGGAGCTCTGCGTAGAGATATCCGAGAAGCAGGGCAGGATTGCCACGCTGGAGATTGAGTGCGCCACGCTGAAGCAGACCTTGGAGCTCCTCCATCAGGAAATCGCAAGTACTTCTTCAAAACTCATTGAGAAAAGATTGTTCTACACAAAGACAATAGAAAGCCTGACGGTCAAATTACAAGAGCAACAGGAATGGCTTGGTGCATTTAAGCTTAAGGTTGAAGAGTCTCAGAGCAAGCAAAACCTTCAAGGTACAGCTCTTCTGAATATGAAGTGAAATAAATAGTGGCTCCAATGCTATTTTTTCCTATCTTACTTAAGTCCTTTCATGGGTTTTCTGTATCCATGTTGGTAAGCGTCAATATGTGGTATGTTGATTGTGCAGTTTTTTTTTTTCATTATATAGTTGAAACATGTTATTGTGCAGTCCAGTCAGTTCTAATTGCATCAATCTGTGTTTCTGAGTTAGCTACCATGAAAGGTGCTGAGGAAGGCCATGAAGCAAAGCAGACTGCATGCTTTTAATATGTGCATGCCCTACACAAGTACACATATGACATATGACAAATGCATTTGCACTGATTGCAATTCTTGGAAGTTGGGGGCATGAGTTACACTTCCTGGCTCAATCTGTGAAATTTCAGACTTGTAGATTTATTATGCACATGTGGATTAGAACTAAAAGCTGTTATACTTTGACTTTGGTAGTATCAAAGGAGGAGCCGATGTGCAGCTGCACCAGTTCAGGCTTTGTGTGGAAGTGGCACCAATTGATAAGAAGATATCTGGATTCTGGAGACTTCTATAAATTGCATAGCATTTCTATCTAAAAGTTGGCATGAAATTTAGATACCTAAATTAATATTTGATTACTATACGTAGCTTAGATTATTAGGAAGCCGACCTTGTATAAAGAGGGATCAGGTTAAGTGTTGATCAAGAAGGAATAGCGAAGTCCATTCTCCTATGTATTCAGCTCAGGCATATGCACCTGCCCTTTTCTGGCCAAACCACTGTTTATTCTAGAAATCATTGATTGATGAGGTCCTCCCCCACTCATTTTTGCATCATATGCTCTCTTTACAAAGGCTATAACAAAATCATATAATGTTTATTTACATATCTAACTAATTCCTCCTTTTTGATTAACTGGTGAGCATGGAGTAGAAGTTTCTGCAATCTTCTTTTCTGGACAGTCTTCCTCACCACCCTCCCTCCCAGAGTCTCAGTACAGTGCCAACCTTTGTTAATCTAAAAGCACCAATTGATATGGACAAAGCCATGGAATACTTAACTCATGTGGGAGCCTAGATAAGGGAAATGACATTGGAAGCAAGCAAGGAGAACTCAGGATTCAACTGGAGTCAACTAAACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGAAATCAGCGAAGTACTCCAATTCTGACACCCATCCTTAGATCTATGACATCTGCAAGTTGTATTATGCCTATTTTTGGGTGAAACTGAAAGGATTATGTCTTTACTTTTCAGAGTAAGCAGGTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGATATGAAATCCTTAGAGGAGG AACACAAAGCTCTACAAGC TGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTG AAGAACGTATA AATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGATTGGAGTACAAGGTCGAACTAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATGACGTCTAGTCGTCTACCAGTGGAAAGAGATACTAAATTGCATAAGCTAGAACATTGTCAATGAAGTTATCCAGAGTA ]
[+] EMBL BI806286 [ TTCTGGCTTTCTTGCTCCCCTACGACAGATGGATATGAAATCCTTAGAGGAGGTAACACCAAGCTCTACAAGCATGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTGTAAGAACGTATATAATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGANTGGAGTACAAGGTCGAACTAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACAC CTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGAC ACTTCATATCGAGATTATATTGATGACGTCTAGTCGTCTACC GTGGAAAGAGATACTAAATTGCATAAGCTAGAACCTTGTC ATGAAGTTATCC GAGTAGATTATATTCATTGGAGAGATGTAACTGGTTGAGATAAGCTAAAATTTAAAAAAAAA]
consensusID : consensus_7242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[AACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGAAATCAGCGAAAGTAAGCAGGTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGATATGAAATCCTTAGAGGAGGAACACAAAGCTCTACAAGCTGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTGAAGAACGTATAAATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGATTGGAGTACAAGGTCGAAATAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATAACGTCTAGTCGTCTACCAAAAA]
[-] EMBL CF292692 [AACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGAAATCAGCGAAAGTAAGCAGGTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGATATGAAATCCTTAGAGGAGGAACACAAAGCTCTACAAGCTGATAAAGCTGGAGAAATTGAGTACTTTCAGTCTCTTGAAGAACGTATAAATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGATTGGAGTACAAGGTCGAAATAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATAACGTCTAGTCGTCTACCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7242#0 TGGACTGAAGGAGTAGAAACTTTTTTCTCGAGGGTTGGATAAAAGCATAAACCTCACTTC 60
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 CAACGGAAACCTCGAGAGCGCTCTCTCGCTCGCCCATACTCTCCTCCGCCGCGTCTCCAT 120
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 CCTCTCCTCGCCGCCGCCGCCGTCGTATTCTCCTCCGTTCCGCTCCACCACTCCGGCGGA 180
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 CCAGCCATGGAGGAGTACCTGGCTAACATGAAGACCCTCCGCTCCTACATGAGCGATCTG 240
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 GAGGAGGAAGCGACGAAGCGGTCGGCGGAGGAGCAGCGGCAGCGCACTGCCATCGACGCC 300
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 CACGGCGCCGACCTCGCCCAAGTGAGGGCGCAGACGAAGCAGGCTAGCGAGGAGTCCGAG 360
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 CAGCTTTCGAAGGCGAGGGCGGAGCCCTGCGTAGAGATATCCGAGAAGCAGGGCAGGATT 420
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 GCCACGCTGGAGATTGAGTGCGCCACGCTGAAGCAGACCTTGGAGCTCCTCCATCAGGAA 480
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 ATCGCAAGTACTTCTTCAAAACTCATTGAGAAAAGATTGTTCTACACAAAGACAATAGAA 540
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 AGCCTGACGGTCAAATTACAAGAGCAACAGGAATGGCTTGGTGCATTTAAGCTTAAGGTT 600
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 GAAGAGTCTCAGAGCAAGCAAAACCTTCAAGGTACAGCTCTTCTGAATATGAAGTGAAAT 660
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 AAATAGTGGCTCCAATGCTATTTTTTCCTATCTTACTTAAGTCCTTTCATGGGTTTTCTG 720
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 TATCCATGTTGGTAAGCGTCAATATGTGGTATGTTGATTGTGCAGTTTTTTTTTTTCATT 780
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 ATATAGTTGAAACATGTTATTGTGCAGTCCAGTCAGTTCTAATTGCATCAATCTGTGTTT 840
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 CTGAGTTAGCTACCATGAAAGGTGCTGAGGAAGGCCATGAAGCAAAGCAGACTGCATGCT 900
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 TTTAATATGTGCATGCCCTACACAAGTACACATATGACATATGACAAATGCATTTGCACT 960
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 GATTGCAATTCTTGGAAGTTGGGGGCATGAGTTACACTTCCTGGCTCAATCTGTGAAATT 1020
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 TCAGACTTGTAGATTTATTATGCACATGTGGATTAGAACTAAAAGCTGTTATACTTTGAC 1080
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 TTTGGTAGTATCAAAGGAGGAGCCGATGTGCAGCTGCACCAGTTCAGGCTTTGTGTGGAA 1140
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 GTGGCACCAATTGATAAGAAGATATCTGGATTCTGGAGACTTCTATAAATTGCATAGCAT 1200
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 TTCTATCTAAAAGTTGGCATGAAATTTAGATACCTAAATTAATATTTGATTACTATACGT 1260
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 AGCTTAGATTATTAGGAAGCCGACCTTGTATAAAGAGGGATCAGGTTAAGTGTTGATCAA 1320
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 GAAGGAATAGCGAAGTCCATTCTCCTATGTATTCAGCTCAGGCATATGCACCTGCCCTTT 1380
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 TCTGGCCAAACCACTGTTTATTCTAGAAATCATTGATTGATGAGGTCCTCCCCCACTCAT 1440
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 TTTTGCATCATATGCTCTCTTTACAAAGGCTATAACAAAATCATATAATGTTTATTTACA 1500
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 TATCTAACTAATTCCTCCTTTTTGATTAACTGGTGAGCATGGAGTAGAAGTTTCTGCAAT 1560
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 CTTCTTTTCTGGACAGTCTTCCTCACCACCCTCCCTCCCAGAGTCTCAGTACAGTGCCAA 1620
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 CCTTTGTTAATCTAAAAGCACCAATTGATATGGACAAAGCCATGGAATACTTAACTCATG 1680
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 TGGGAGCCTAGATAAGGGAAATGACATTGGAAGCAAGCAAGGAGAACTCAGGATTCAACT 1740
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 GGAGTCAACTAAACATAAGATCGACGAGATCAAAGAAAAACAATCAGCACTTCTTACGGA 1800
consensus_7242#1 ------------------------------------------------------------
consensus_7242#0 AATCAGCGAAGTACTCCAATTCTGACACCCATCCTTAGATCTATGACATCTGCAAGTTGT 1860
consensus_7242#1 ------------------------------AACATAAGATCGACGAGATCA--AAGAAAA 28
* * * ***** * ** *** ***
consensus_7242#0 ATTATGCCTATTTTTGGGTGAAACTGAAAGGATTATGTCTTTACTTTTCAGAGTAAGCAG 1920
consensus_7242#1 ACAATCAGCACTTCTTACGGAAATCAGCG--------------------AAAGTAAGCAG 68
* ** * ** * **** * *********
consensus_7242#0 GTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGAT 1980
consensus_7242#1 GTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTTCTTGCTCCACTACAACAGATGGAT 128
************************************************************
consensus_7242#0 ATGAAATCCTTAGAGGAGGAACACAAAGCTCTACAAGCTGATAAAGCTGGAGAAATTGAG 2040
consensus_7242#1 ATGAAATCCTTAGAGGAGGAACACAAAGCTCTACAAGCTGATAAAGCTGGAGAAATTGAG 188
************************************************************
consensus_7242#0 TACTTTCAGTCTCTTGAAGAACGTATAAATGAAATGAAGGGAGTTTCTGATGCAGTAAAA 2100
consensus_7242#1 TACTTTCAGTCTCTTGAAGAACGTATAAATGAAATGAAGGGAGTTTCTGATGCAGTAAAA 248
************************************************************
consensus_7242#0 TGCCGTTGCGGATTGGAGTACAAGGTCGAACTAGGTGGCGAAGCCATGGATCTAAGCTAA 2160
consensus_7242#1 TGCCGTTGCGGATTGGAGTACAAGGTCGAAATAGGTGGCGAAGCCATGGATCTAAGCTAA 308
****************************** *****************************
consensus_7242#0 ACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTA 2220
consensus_7242#1 ACTTGTCCGTAGTGCGTAATGGCCACAGTTACACACTGTAAAATGCTTATATACATGTTA 368
************************************************************
consensus_7242#0 CTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATGACGTCTAGTCGTCT 2280
consensus_7242#1 CTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATAACGTCTAGTCGTCT 428
********************************************* **************
consensus_7242#0 ACCAGTGGAAAGAGATACTAAATTGCATAAGCTAGAACATTGTCAATGAAGTTATCCAGA 2340
consensus_7242#1 ACCAAAAA---------------------------------------------------- 436
****
consensus_7242#0 GTAGATTATATTCATTGGAGAGATGTAACTGGTTGAGATAAGCTAAAATTTAAAAAAAAA 2400
consensus_7242#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||