These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1293 fasta sequence [GCTTTCTCCTCGCAGATGCAATTGCGCGAACACCTCCAAACTCCCGAGTCCCCTCTCCTCTCTCGTCTTCCTCTCCACGACGACCTCTCCGCTTCAATTCTGCGCCGCCGCCTCAGAGCGCCATGGACTTCAGCGGCGACATCGATGACCTGATCTCCCTCCAGCTCCTCCACGATCAGCTGCTCGGGGTCGAGGCCGACGCGTGCCTCCCGGTGGCAGTTCATCACGATGGCGTCGCCGCGTTCGCCGAGCATCAGCAGGGTTTCCATCCCGCGGCGTTCTTGCCGCAGCAGCCGATGACGATGACACCGGCTGGGTACGTGGACATGGCGAATGATCAGTATTTGGGTGCGCATGCCGCCGCTGGCGAGGCGGAGGCGGTCTACCGGGCGGCGGCGGCGGAGCCGGTGATGATACGGTTCGGCGGCGAGGTGTCCCCGGTGTCGGACCCCCGGAGGCCGCCCCTGACGATCTCGCTGCCTCCGACGTCGCACGCGTGGGCGGCGGCGGAGGCGGTGCACCCGGCCGCTCTGCTGCAGGCGCAGGCCGCGGCCGCGGCCGCCGACCCGAACGACTTCCGGAAGTACCGCGGCGTGCGGCAGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCCAAGAAGCGGGGCTCGCGCGTGTGGCTCGGCACGTACGACACGGCCATCGAGGCGGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGCGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCTCCCGCGGCGCCGACTTCCTGGCACCGCCGCCGCCGCCCCCGCCGCCGACGACGTCGACCCACGGCAAACGGAAGCGGCACGAGACGGCGGCGGCCGACCCGGACGTCGAGGTGATCGGAGAATCATCCAAATCCGTCAAGACCGAGACGTACACATCGCCGGCGTCGTCGTCGCTGGCCTCAACGACAACCTCAACGGTGACATCATCATCCACGTCGCCTTCCCCCTCGTCGGAGGCAGCTGCCTGCGGCGGCGGCGGCGGCAGCGAGCTGTTCGTCCCACCGATGCCGTCGAGCTGGTCGTGGGATCAGTTGGAGGGGTTCTTCGGCATCCTCTCGCCGCTCTCGCCGCACCCGCAAATGGGATTCCCGGAGGTCGCCGTAAACTAATTAAGCGCGCTAATGATCTCTCTAAGCATGATTAATTAGGCGCAATAATCGGCAATTAATTAGTGGCTTCTAGTTCTCGACGGCCTTCGCTTTGGACACATCTCAGGAGATTTGGCTTGGAGCAGTGTACTAT] [+] EMBL AY339378 [GCTTTCTCCTCGCAGATGCAATTGCGCGAACACCTCCAAACTCCCGAGTCCCCTCTCCTCTCTCGTCTTCCTCTCCACGACGACCTCTCCGCTTCAATTCTGCGCCGCCGCCTCAGAGCGCCATGGACTTCAGCGGCGACATCGATGACCTGATCTCCCTCCAGCTCCTCCACGATCAGCTGCTCGGGGTCGAGGCCGACGCGTGCCTCCCGGTGGCAGTTCATCACGATGGCGTCGCCGCGTTCGCCGAGCATCAGCAGGGTTTCCATCCCGCGGCGTTCTTGCCGCAGCAGCCGATGACGATGACACCGGCTGGGTACGTGGACATGGCGAATGATCAGTATTTGGGTGCGCATGCCGCCGCTGGCGAGGCGGAGGCGGTCTACCGGGCGGCGGCGGCGGAGCCGGTGATGATACGGTTCGGCGGCGAGGTGTCCCCGGTGTCGGACCCCCGGAGGCCGCCCCTGACGATCTCGCTGCCTCCGACGTCGCACGCGTGGGCGGCGGCGGAGGCGGTGCACCCGGCCGCTCTGCTGCAGGCGCAGGCCGCGGCCGCGGCCGCCGACCCGAACGACTTCCGGAAGTACCGCGGCGTGCGGCAGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCCAAGAAGCGGGGCTCGCGCGTGTGGCTCGGCACGTACGACACGGCCATCGAGGCGGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGCGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCTCCCGCGGCGCCGACTTCCTGGCACCGCCGCCGCCGCCCCCGCCGCCGACGACGTCGACCCACGGCAAACGGAAGCGGCACGAGACGGCGGCGGCCGACCCGGACGTCGAGGTGATCGGAGAATCATCCAAATCCGTCAAGACCGAGACGTACACATCGCCGGCGTCGTCGTCGCTGGCCTCAACGACAACCTCAACGGTGACATCATCATCCACGTCGCCTTCCCCCTCGTCGGAGGCAGCTGCCTGCGGCGGCGGCGGCGGCAGCGAGCTGTTCGTCCCACCGATGCCGTCGAGCTGGTCGTGGGATCAGTTGGAGGGGTTCTTCGGCATCCTCTCGCCGCTCTCGCCGCACCCGCAAATGGGATTCCCGGAGGTCGCCGTAAACTAATTAAGCGCGCTAATGATCTCTCTAAGCATGATTAATTAGGCGCAATAATCGGCAATTAATTAGTGGCTTCTAGTTCTCGACGGCCTTCGCTTTGGACACATCTCAGGAGATTTGGCTTGGAGCAGTGTACTAT] [+] EMBL AA752355 [ ACCCCAAGAAGCGGGGCTCGCGCGTGTGGCTCGGCACGTACGACACGGCCATCGAGGCGGCGCGCGCGTACAACCGCGCCGCCTTCCGCATGCGCGGCGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCTCCCGCGGCGCCGACTTCCTGGCACCGCCGCCGCCGCCCCCGCCGCCGATAACATCTACCCACGGC ] consensusID : consensus_7243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence [CTTCCGCAAGTACCGCGGCGTGCGACAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCGAAGAGGCGCGGGTCGCGCGTGTGGCTGGGCACGTACGACACCCCCGTGGAGGCCGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGTGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCACCCGCGGCGCCGAACTGTGGGCTCCTCCCCCGCCGCCACCCGCGCACTCCGCCGCCGCCTCGACGACGAACAAGCGGAAGCGGCAGCCGTCGGAGGACCCCGACGACGGCGTCGAGGTGATCGGAGTGGTAAGCAAGGCCGTCAAGACCGAGGCGCCGACGTCCAACTCGTCGTCACTGTCGTCGTCCCTGACGTCGCGGGACACGACGCCGGCCACGTCGTCGGCGGGGGCGGAGCACGCCGGCGCGGCCGCCGAGAGTTCGCCGGCGACGCCGTCGAGCTGGAGCTGGGAGCAGTACTGGGAAGCGCTGCTCGGTGGCCTCCCGCCACTGTCGCCTCTGTCGCCGCACCCGGCGTTGGGGTTCCCTCAGCTCACCGTTAACTGAGAAAATTAAACAATGATTAGCTGACGTGGGCACAGAAATAATGCGTTTTTTTCCCGTTGTTAACGACGTCATGTGTACATTGGAACTTTTTTTGGGAGCTTAACAGAAGGGGCGTATAGACAAACATCAGAAAGTGGTAGTCGTGTTTACTTTTTTTTTTCTTTCGAGTTGAGAACCTTGAGATCAATCGATGCTTGTAAAGAATAAGCAGAGGGTGCTGTTTGGCATTTGATATGACAATGTAAACAAATAGTACAAGTTACTTT] [+] EMBL AK109141 [CTTCCGCAAGTACCGCGGCGTGCGACAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCGAAGAGGCGCGGGTCGCGCGTGTGGCTGGGCACGTACGACACCCCCGTGGAGGCCGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGTGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCACCCGCGGCGCCGAACTGTGGGCTCCTCCCCCGCCGCCACCCGCGCACTCCGCCGCCGCCTCGACGACGAACAAGCGGAAGCGGCAGCCGTCGGAGGACCCCGACGACGGCGTCGAGGTGATCGGAGTGGTAAGCAAGGCCGTCAAGACCGAGGCGCCGACGTCCAACTCGTCGTCACTGTCGTCGTCCCTGACGTCGCGGGACACGACGCCGGCCACGTCGTCGGCGGGGGCGGAGCACGCCGGCGCGGCCGCCGAGAGTTCGCCGGCGACGCCGTCGAGCTGGAGCTGGGAGCAGTACTGGGAAGCGCTGCTCGGTGGCCTCCCGCCACTGTCGCCTCTGTCGCCGCACCCGGCGTTGGGGTTCCCTCAGCTCACCGTTAACTGAGAAAATTAAACAATGATTAGCTGACGTGGGCACAGAAATAATGCGTTTTTTTCCCGTTGTTAACGACGTCATGTGTACATTGGAACTTTTTTTGGGAGCTTAACAGAAGGGGCGTATAGACAAACATCAGAAAGTGGTAGTCGTGTTTACTTTTTTTTTTCTTTCGAGTTGAGAACCTTGAGATCAATCGATGCTTGTAAAGAATAAGCAGAGGGTGCTGTTTGGCATTTGATATGACAATGTAAACAAATAGTACAAGTTACTTT] [+] EMBL AY339379 [CTTCCGCAAGTACCGCGGCGTGCGACAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCGAAGAGGCGCGGGTCGCGCGTGTGGCTGGGCACGTACGACACCCCCGTGGAGGCCGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGTGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCACCCGCGGCGCCGAACTGTGGGCTCCTCCCCCGCCGCCACCCGCGCACTCCGCCGCCGCCTCGACGACGAACAAGCGGAAGCGGCAGCCGTCGGAGGACCCCGACGACGGCGTCGAGGTGATCGGAGTGGTAAGCAAGGCCGTCAAGACCGAGGCGCCGACGTCCAACTCGTCGTCACTGTCGTCGTCCCTGACGTCGCGGGACACGACGCCGGCCACGTCGTCGGCGGGGGCGGAGCACGCCGGCGCGGCCGCCGAGAGTTCGCCGGCGACGCCGTCGAGCTGGAGCTGGGAGCAGTACTGGGAAGCGCTGCTCGGTGGCCTCCCGCCACTGTCGCCTCTGTCGCCGCACCCGGCGTTGGGGTTCCCTCAGCTCACCGTTAACTGAGAAAATTAAACAATGATTAGCTGACGTGGGCACAGAAATAATGCGTTTTTTTCCCGTTGTTAACGACGTCATGTGTACATTGGAACTTTTTTTGGGAGCTTAACAGAAGGGGCGTATAGACAAACATCAGAAAGTGGTAGTCGTGTTTACTTTTTTTTTTCTTTaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7243#0 GCTTTCTCCTCGCAGATGCAATTGCGCGAACACCTCCAAACTCCCGAGTCCCCTCTCCTC 60 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 TCTCGTCTTCCTCTCCACGACGACCTCTCCGCTTCAATTCTGCGCCGCCGCCTCAGAGCG 120 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 CCATGGACTTCAGCGGCGACATCGATGACCTGATCTCCCTCCAGCTCCTCCACGATCAGC 180 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 TGCTCGGGGTCGAGGCCGACGCGTGCCTCCCGGTGGCAGTTCATCACGATGGCGTCGCCG 240 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 CGTTCGCCGAGCATCAGCAGGGTTTCCATCCCGCGGCGTTCTTGCCGCAGCAGCCGATGA 300 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 CGATGACACCGGCTGGGTACGTGGACATGGCGAATGATCAGTATTTGGGTGCGCATGCCG 360 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 CCGCTGGCGAGGCGGAGGCGGTCTACCGGGCGGCGGCGGCGGAGCCGGTGATGATACGGT 420 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 TCGGCGGCGAGGTGTCCCCGGTGTCGGACCCCCGGAGGCCGCCCCTGACGATCTCGCTGC 480 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 CTCCGACGTCGCACGCGTGGGCGGCGGCGGAGGCGGTGCACCCGGCCGCTCTGCTGCAGG 540 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 CGCAGGCCGCGGCCGCGGCCGCCGACCCGAACGACTTCCGGAAGTACCGCGGCGTGCGGC 600 consensus_7243#1 ----------------------------------CTTCCGCAAGTACCGCGGCGTGCGAC 26 ****** ***************** * consensus_7243#0 AGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCCAAGAAGCGGGGCTCGCGCG 660 consensus_7243#1 AGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCGAAGAGGCGCGGGTCGCGCG 86 ************* ************************** **** *** ** ******* consensus_7243#0 TGTGGCTCGGCACGTACGACACGGCCATCGAGGCGGCGCGCGCGTACGACCGCGCCGCCT 720 consensus_7243#1 TGTGGCTGGGCACGTACGACACCCCCGTGGAGGCCGCGCGCGCGTACGACCGCGCCGCCT 146 ******* ************** ** * ***** ************************* consensus_7243#0 TCCGCATGCGCGGCGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCTCCCGCGGCG 780 consensus_7243#1 TCCGCATGCGCGGTGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCACCCGCGGCG 206 ************* ************************************ ********* consensus_7243#0 CCGACTTCCTGGCACCGCCGCCGCCGCC-CCCGC---CGCCGACGACG--TCGACCCACG 834 consensus_7243#1 CCGAACTGTGGGCTCCTCCCCCGCCGCCACCCGCGCACTCCGCCGCCGCCTCGACGACGA 266 **** * *** ** ** ******** ***** * *** ** ** ***** consensus_7243#0 GCAAACGGAAGCGGCACGAGACGGCGGCGGCCGACCCGGACGTCGAGGTGATCGGAGAAT 894 consensus_7243#1 ACAAGCGGAAGCGGCAGCCGTCGGAGGACCCCGACGACGGCGTCGAGGTGATCGGAGTGG 326 *** *********** * *** ** ***** * ***************** consensus_7243#0 CATCCAAATCCGTCAAGACCGAGACGTACACATCGCCGGCGTCGTCGTCGCTGGCCTCAA 954 consensus_7243#1 TAAGCAAGGCCGTCAAGACCGAGGCGCCGACGTC--CAAC-TCGTCGTCACTGTCGTCGT 383 * *** ************** ** ** ** * * ******** *** * ** consensus_7243#0 CGACAACCTCAACGGTGACATCATCATCCACGTCGCCTTCCCCCTCGTCGGAGGCAGCTG 1014 consensus_7243#1 C-----CC-------TGACGTCGCGGGACACGACGCCGGCCACGTCGTCGGCGGGGGCGG 431 * ** **** ** **** **** ** * ******* ** ** * consensus_7243#0 CCTGCGGCGGCGGCGGCGGCAGCGAGCTGTTCGTCCCACCGATGCCGTCGAGCTGGTCGT 1074 consensus_7243#1 AGCACGCCGGCG-CGGCCGCCGAGAG---TTCG--CCGGCGACGCCGTCGAGCTGGAGCT 485 ** ***** **** ** * *** **** ** *** ************* * consensus_7243#0 GGGATCAGTT---GGAGGGGTTCTTCGGCATCCTCTCGCCGCTCTCGCC---------GC 1122 consensus_7243#1 GGGAGCAGTACTGGGAAGCGCTGCTCGGTGGCCTCCCGCCACTGTCGCCTCTGTCGCCGC 545 **** **** *** * * * **** **** **** ** ***** ** consensus_7243#0 ACCCGCAAATGGGATTCCCGGAGGTCGCCGTAAACTAATTAAGCGCGCTAATGATCTCTC 1182 consensus_7243#1 ACCCGGCGTTGGGGTTCCCTCAGCTCACCGTTAACTGAGAAAATTAAACAATGATTAGCT 605 ***** **** ***** ** ** **** **** * ** ****** consensus_7243#0 TAAGCATGATTAATTA-GGCGCAATAATCGGCAATTAATTAGTGGCTTCTAGTTCTCGAC 1241 consensus_7243#1 GACGTGGGCACAGAAATAATGCGTTTTTTTCCCGTTG-TTAACGACGTCATGTGTACATT 664 * * * * * ** * * * ** *** * * ** ** * consensus_7243#0 GGCCTTCGCTTTGGACACATCTCAGGAGATTTGGCTTGG--AGCAGTGTACTAT------ 1293 consensus_7243#1 GGAACTTTTTTTGGGAGCTTAACAGAAGGGGCGTATAGACAAACATCAGAAAGTGGTAGT 724 ** * ***** * * *** ** * * * * ** * * consensus_7243#0 ------------------------------------------------------------ consensus_7243#1 CGTGTTTACTTTTTTTTTTCTTTCGAGTTGAGAACCTTGAGATCAATCGATGCTTGTAAA 784 consensus_7243#0 ------------------------------------------------------------ consensus_7243#1 GAATAAGCAGAGGGTGCTGTTTGGCATTTGATATGACAATGTAAACAAATAGTACAAGTT 844 consensus_7243#0 ----- consensus_7243#1 ACTTT 849 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||