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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1260 fasta sequence
[CGAACCACCCGAAGCCGCAGCAGCAGCGATGGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCGGCCTCCGGGTACGGCTCCAGGCCGCCTCTCGCCTCGCTCCTCCTCTCCAGGCACCACCACCACCACCAGCCTCCGGTCCTCGCGGCCAATCCTGCTGCCGATGTGGCCGCCGGCGAGGCTGTCCCTCCCGCCACCGCCACCGCCAGCCGGCGCTTCCTCCAGAAGGTGGCGTCGGCTGCGGCTGCCACTCTGTTGGCGACGATTGCACTGACGCTGATCCAGCCGGCGTGGGCGCCGCCGGCGTTGGCGTCGTTCCACTCGGCGGCGAAGGCGGGAGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGCTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCCGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCGCGCTGGAGAACGGCGGCGGCGGCGGCGGCGCGCACCGTGGCCCGCTCGATGCTCTACCAGCCACCAGGAAGAAGATCACCTTCGCCACGTTCGCCACCGGGATCGTGCACGGGCTGCAGCCCGACGCGCTCATGATGGTCCTGCCGGCGCTCGCCCTCCCGTCGCGCGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTCGGCACCGTGGTCGCCATGGGCAGCTACACCGTCCTGATCGGCTCTTGTACGGAGGCGCTCAAGGAGAGGGTTCCCAGGATCACGGAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATCTCCATGGGCCTCGGCATCCTCATCAGCCAGTCTCTCGGCTTTAGCTTGTACTGATCCGCCATCCCTCGCGACACCTCCTTCTTCTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTGTAGGAATCTGCCATGAGAATTTTGCAAATGTTGCTTGTTGAGATCCAGGAGAATTCAAGTTT]
[+] EMBL AK105979 [CGAACCACCCGAAGCCGCAGCAGCAGCGATGGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCGGCCTCCGGGTACGGCTCCAGGCCGCCTCTCGCCTCGCTCCTCCTCTCCAGGCACCACCACCACCACCAGCCTCCGGTCCTCGCGGCCAATCCTGCTGCCGATGTGGCCGCCGGCGAGGCTGTCCCTCCCGCCACCGCCACCGCCAGCCGGCGCTTCCTCCAGAAGGTGGCGTCGGCTGCGGCTGCCACTCTGTTGGCGACGATTGCACTGACGCTGATCCAGCCGGCGTGGGCGCCGCCGGCGTTGGCGTCGTTCCACTCGGCGGCGAAGGCGGGAGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGCTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCCGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCGCGCTGGAGAACGGCGGCGGCGGCGGCGGCGCGCACCGTGGCCCGCTCGATGCTCTACCAGCCACCAGGAAGAAGATCACCTTCGCCACGTTCGCCACCGGGATCGTGCACGGGCTGCAGCCCGACGCGCTCATGATGGTCCTGCCGGCGCTCGCCCTCCCGTCGCGCGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTCGGCACCGTGGTCGCCATGGGCAGCTACACCGTCCTGATCGGCTCTTGTACGGAGGCGCTCAAGGAGAGGGTTCCCAGGATCACGGAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATCTCCATGGGCCTCGGCATCCTCATCAGCCAGTCTCTCGGCTTTAGCTTGTACTGATCCGCCATCCCTCGCGACACCTCCTTCTTCTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTGTAGGAATCTGCCATGAGAATTTTGCAAATGTTGCTTGTTGAGATCCAGGAGAATTCAAGTTT]
[+] EMBL AK058327 [ GGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCGGCCTCCGGGTACGGCTCCAGGCCGCCTCTCGCCTCGCTCCTCCTCTCCAGGCACCACCACCACCACCAGCCTCCGGTCCTCGCGGCCAATCCTGCTGCCGATGTGGCCGCCGGCGAGGCTGTCCCTCCCGCCACCGCCACCGCCAGCCGGCGCTTCCTCCAGAAGGTGGCGTCGGCTGCGGCTGCCACTCTGTTGGCGACGATTGCACTGACGCTGATCCAGCCGGCGTGGGCGCCGCCGGCGTTGGCGTCGTTCCACTCGGCGGCGAAGGCGGGAGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGCTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCCGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCGCGCTGGAGAACGGCGGCGGCGGCGGCGGCGCGCACCGTGGCCCGCTCGATGCTCTACCAGCCACCAGGAAGAAGATCACCTTCGCCACGTTCGCCACCGGGATCGTGCACGGGCTGCAGCCCGGCGCGCTCATGATGGTCCTGCCGGCGCTCGCCCTCCCGTCGCGCGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTCGGCACCGTGGTCGCCATGGGCAGCTACACCGTCCTGGTCGGCTCTTGTACGGAGGCGCTCAAGGAGAGGGTTCCCAGGATCACGGAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATCTCCATGGGCCTCGGCATCCTCATCAGCCAGTCTCTCGGCTTTAGCTTGTACTGATCCGCCATCCCTCGCGACACCTCCTTCTTCTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTGTAGGAATCTGCCATGAGAATTTTGCAAATGTTGCTTGTTGAGATCCAGGAGAATTCAAGTTT]
consensusID : consensus_7247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[GGANNCGGGTGTGGAGAACGNAGTTTTGTTCACATNTNGAGNNTTNGCGTCTTTCCACTCGGCGGCGAAGGCGGGCGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGTTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCGGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCNCGCTGGAAAACNGCNGCNGCNGCNGCNGCNGCCCCANCGTGGCCCGCTCGATGCTCTA]
[+] EMBL AA751908 [GGANNCGGGTGTGGAGAACGNAGTTTTGTTCACATNTNGAGNNTTNGCGTCTTTCCACTCGGCGGCGAAGGCGGGCGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGTTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCGGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCNCGCTGGAAAACNGCNGCNGCNGCNGCNGCNGCCCCANCGTGGCCCGCTCGATGCTCTA]
consensusID : consensus_7247#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence
[CACGGGTGTGGAGAATGGAGTTTTGTTCGCATCTCCNGCGTTNGCGTCGTTCCACTCGGCGGCGAAGGCGGGCGGTGGCATCTTCAAGTCGGAGCTGCTCANCANCGCGTGGACGGGGTTCCTGGNCNGTTNNCANCNNNCTNTGTNGTGCTTTNNAAG]
[+] EMBL AA751907 [CACGGGTGTGGAGAATGGAGTTTTGTTCGCATCTCCNGCGTTNGCGTCGTTCCACTCGGCGGCGAAGGCGGGCGGTGGCATCTTCAAGTCGGAGCTGCTCANCANCGCGTGGACGGGGTTCCTGGNCNGTTNNCANCNNNCTNTGTNGTGCTTTNNAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7247#0 CGAACCACCCGAAGCCGCAGCAGCAGCGATGGCAATGGAGAGGCTTATCTCTTCGCCGCT 60
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 CCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGC 120
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 GCCACCCCACCACCGCGCCGGCGGTGCGGCCTCCGGGTACGGCTCCAGGCCGCCTCTCGC 180
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 CTCGCTCCTCCTCTCCAGGCACCACCACCACCACCAGCCTCCGGTCCTCGCGGCCAATCC 240
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 TGCTGCCGATGTGGCCGCCGGCGAGGCTGTCCCTCCCGCCACCGCCACCGCCAGCCGGCG 300
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 CTTCCTCCAGAAGGTGGCGTCGGCTGCGGCTGCCACTCTGTTGGCGACGATTGCACTGAC 360
consensus_7247#1 ------------------------------------------------GGANNCGGGTGT 12
consensus_7247#2 ---------------------------------------------------CACGGGTGT 9
*
consensus_7247#0 GCTGATCCAGCCGGCGTGGGCGCCGCCGGCGTTGGCGTCGTTCCACTCGGCGGCGAAGGC 420
consensus_7247#1 GGAGAACGNAGTTTTGTTCACATNTNGAGNNTTNGCGTCTTTCCACTCGGCGGCGAAGGC 72
consensus_7247#2 GGAGAATGGAGTTTTGTTCGCATCTCCNGCGTTNGCGTCGTTCCACTCGGCGGCGAAGGC 69
* ** ** * * ** ***** ********************
consensus_7247#0 GGGAGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGG 480
consensus_7247#1 GGGCGGTGGCATCTTCAAGTCGGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGG 132
consensus_7247#2 GGGCGGTGGCATCTTCAAGTCGGAGCTGCTCANCANCGCGTGGACGGGGTTCCTGGNCNG 129
*** **************************** ** ******************** * *
consensus_7247#0 CTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCCGCGCTGGCGCCGCTGTCCATCGG 540
consensus_7247#1 TTGCCTGCACACGCTCTCCGGGCCGGACCACCTCGCGGCGCTGGCGCCGCTGTCCATCGG 192
consensus_7247#2 TTNNCANCNNNCTNTGTN-GTGCTTTNNAAG----------------------------- 159
* * * * * * * ** *
consensus_7247#0 GAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGG 600
consensus_7247#1 GAGGTCGCGGGTGGAGAGCGCCGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGG 252
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 CCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCAT 660
consensus_7247#1 CCAGGTCATCTTCGGCCTCCTGTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCAT 312
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 CCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCAT 720
consensus_7247#1 CCGAACGTGGGGGACCCGCGTCGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCAT 372
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 CAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCGCGCTGGAGAACGGCGGCGGCGGCGG 780
consensus_7247#1 CAGGGAGGCCACCGAGGTGCCCACGCCGTGCGTCNCGCTGGAAAACNGCNGCNGCNGCNG 432
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 CGGCG--CGCACCGTGGCCCGCTCGATGCTCTACCAGCCACCAGGAAGAAGATCACCTTC 838
consensus_7247#1 CNGCNGCCCCANCGTGGCCCGCTCGATGCTCTA--------------------------- 465
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 GCCACGTTCGCCACCGGGATCGTGCACGGGCTGCAGCCCGACGCGCTCATGATGGTCCTG 898
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 CCGGCGCTCGCCCTCCCGTCGCGCGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTC 958
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 GGCACCGTGGTCGCCATGGGCAGCTACACCGTCCTGATCGGCTCTTGTACGGAGGCGCTC 1018
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 AAGGAGAGGGTTCCCAGGATCACGGAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATC 1078
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 TCCATGGGCCTCGGCATCCTCATCAGCCAGTCTCTCGGCTTTAGCTTGTACTGATCCGCC 1138
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 ATCCCTCGCGACACCTCCTTCTTCTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTG 1198
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 TAGGAATCTGCCATGAGAATTTTGCAAATGTTGCTTGTTGAGATCCAGGAGAATTCAAGT 1258
consensus_7247#1 ------------------------------------------------------------
consensus_7247#2 ------------------------------------------------------------
consensus_7247#0 TT 1260
consensus_7247#1 --
consensus_7247#2 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||