These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1393 fasta sequence [GCTCGCCGCCGCTTCGACGGAGATGGGCGGCGCCGCCGCCGCCGCCGCCGTGGCCCTGCTCGCGGCCACTCGCCGGCGCCCCGCTGCGGGCCCGCTGGCGTTCCTCCTCCCTCGCGCGGCCCGCGCGGGGCTCCACGAGGCTGCTGCTCCGGCGGCGGAGGAGGAGAAGGGGAGGACCCGGAGGAGGCGGAGGAGGAGGAGCAGCAGCAGCCGCCTTCTCGGGCCGGACATCCCCGACACCTGGGACTCGCCCCCGCGCGCCGCGGCGCGGCCGTCTCCCCCGAGCGGCGCCGGAGTTGATTATGACTCCACTGCGACCATTATTGATGGCAAGTCTGTCGCGGAAGACATAAGGTTTCAGATCGCTGAAGAAGTTCGTCAAATGAAAAATGCAGTGGGGCATGTGCCTGGCCTAGCTGTTGTATTGGTCGGCGATAGAAGGGACTCTGAGTCATACGTGCGATACAAAATTAAGGGCTGTGAGGAGGTTGGAATAAAGTCCTTGTTGGCGGAGTTGCCTGGGAACTGTACGGAAGACGTAGTGGTGGATTCTGTGTCAAGATTCAATGAAGATCCATCTGTTCATGGCATTCTTGTGCAACTACCTCTACCACAGCATATGGATGAAGAAAGGATTCTGAGCGCTATTAGCCTAGAGAAGGATGTTGATGGTTTCCATCCATTGAATGTTGGTAATCTTGCCCTCAGAAGCCGGAAGCCTTTATTTGTGCCCTGTGCTGCAAAGGCTTGCCTTGAGTTATTGCTCCAGTCTGGGATTGAACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCCACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGTGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGTATGATTAGCATGTCCATGCTTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK059603 [GCTCGCCGCCGCTTCGACGGAGATGGGCGGCGCCGCCGCCGCCGCCGCCGTGGCCCTGCTCGCGGCCACTCGCCGGCGCCCCGCTGCGGGCCCGCTGGCGTTCCTCCTCCCTCGCGCGGCCCGCGCGGGGCTCCACGAGGCTGCTGCTCCGGCGGCGGAGGAGGAGAAGGGGAGGACCCGGAGGAGGCGGAGGAGGAGGAGCAGCAGCAGCCGCCTTCTCGGGCCGGACATCCCCGACACCTGGGACTCGCCCCCGCGCGCCGCGGCGCGGCCGTCTCCCCCGAGCGGCGCCGGAGTTGATTATGACTCCACTGCGACCATTATTGATGGCAAGTCTGTCGCGGAAGACATAAGGTTTCAGATCGCTGAAGAAGTTCGTCAAATGAAAAATGCAGTGGGGCATGTGCCTGGCCTAGCTGTTGTATTGGTCGGCGATAGAAGGGACTCTGAGTCATACGTGCGATACAAAATTAAGGGCTGTGAGGAGGTTGGAATAAAGTCCTTGTTGGCGGAGTTGCCTGGGAACTGTACGGAAGACGTAGTGGTGGATTCTGTGTCAAGATTCAATGAAGATCCATCTGTTCATGGCATTCTTGTGCAACTACCTCTACCACAGCATATGGATGAAGAAAGGATTCTGAGCGCTATTAGCCTAGAGAAGGATGTTGATGGTTTCCATCCATTGAATGTTGGTAATCTTGCCCTCAGAAGCCGGAAGCCTTTATTTGTGCCCTGTGCTGCAAAGGCTTGCCTTGAGTTATTGCTCCAGTCTGGGATTGAACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCCACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGTGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGTATGAT ] [+] EMBL CB684120 [ CACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCCACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGTGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGTATGA ] [+] EMBL AU162365 [ ACTGGAGATGTCTGCTTCGAAGAA CTGTGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGTATGATTAGCATGTCCATGCTTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [AGGACGAGACAAGGGGGGGATTGAACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCTACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGNGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGNAT] [+] EMBL CA766514 [AGGACGAGACAAGGGGGGGATTGAACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCTACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGNGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGNAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7251#0 GCTCGCCGCCGCTTCGACGGAGATGGGCGGCGCCGCCGCCGCCGCCGCCGTGGCCCTGCT 60 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 CGCGGCCACTCGCCGGCGCCCCGCTGCGGGCCCGCTGGCGTTCCTCCTCCCTCGCGCGGC 120 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 CCGCGCGGGGCTCCACGAGGCTGCTGCTCCGGCGGCGGAGGAGGAGAAGGGGAGGACCCG 180 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 GAGGAGGCGGAGGAGGAGGAGCAGCAGCAGCCGCCTTCTCGGGCCGGACATCCCCGACAC 240 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 CTGGGACTCGCCCCCGCGCGCCGCGGCGCGGCCGTCTCCCCCGAGCGGCGCCGGAGTTGA 300 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 TTATGACTCCACTGCGACCATTATTGATGGCAAGTCTGTCGCGGAAGACATAAGGTTTCA 360 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 GATCGCTGAAGAAGTTCGTCAAATGAAAAATGCAGTGGGGCATGTGCCTGGCCTAGCTGT 420 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 TGTATTGGTCGGCGATAGAAGGGACTCTGAGTCATACGTGCGATACAAAATTAAGGGCTG 480 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 TGAGGAGGTTGGAATAAAGTCCTTGTTGGCGGAGTTGCCTGGGAACTGTACGGAAGACGT 540 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 AGTGGTGGATTCTGTGTCAAGATTCAATGAAGATCCATCTGTTCATGGCATTCTTGTGCA 600 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 ACTACCTCTACCACAGCATATGGATGAAGAAAGGATTCTGAGCGCTATTAGCCTAGAGAA 660 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 GGATGTTGATGGTTTCCATCCATTGAATGTTGGTAATCTTGCCCTCAGAAGCCGGAAGCC 720 consensus_7251#1 ------------------------------------------------------------ consensus_7251#0 TTTATTTGTGCCCTGTGCTGCAAAGGCTTGCCTTGAGTTATTGCTCCAGTCTGGGATTGA 780 consensus_7251#1 ------------------------------------AGGACGAGACAAGGGGGGGATTGA 24 * * ** ******** consensus_7251#0 ACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCCACTTC 840 consensus_7251#1 ACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCTACTTC 84 ****************************************************** ***** consensus_7251#0 TTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCC 900 consensus_7251#1 TTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCC 144 ************************************************************ consensus_7251#0 AGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGT 960 consensus_7251#1 AGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGT 204 ************************************************************ consensus_7251#0 AAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGA 1020 consensus_7251#1 AAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGA 264 ************************************************************ consensus_7251#0 GGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGT 1080 consensus_7251#1 GGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGN 324 *********************************************************** consensus_7251#0 GAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGAT 1140 consensus_7251#1 GAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGAT 384 ************************************************************ consensus_7251#0 GCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCC 1200 consensus_7251#1 GCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCC 444 ************************************************************ consensus_7251#0 TGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCG 1260 consensus_7251#1 TGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCG 504 ************************************************************ consensus_7251#0 CTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGC 1320 consensus_7251#1 CTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGC 564 ************************************************************ consensus_7251#0 TGAATAAATATTGTATGATTAGCATGTCCATGCTTGCAGTAAAAAAAAAAAAAAAAAAAA 1380 consensus_7251#1 TGAATAAATATTGNAT-------------------------------------------- 580 ************* ** consensus_7251#0 AAAAAAAAAAAAA 1393 consensus_7251#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||