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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1222 fasta sequence
[CCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTGGGGTGGCCGCCGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGTAAGCAACGCGTGTACACATCTCAATCAGTTCTTGCCGATTAATTCACCGAAATCAAATGCAAAATCTGATCCGATCAATCAACACAGGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGTACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAAATGCAATGTATACATGATATACC]
[+] EMBL AK061037 [CCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTGGGGTGGCCGCCGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGTAAGCAACGCGTGTACACATCTCAATCAGTTCTTGCCGATTAATTCACCGAAATCAAATGCAAAATCTGATCCGATCAATCAACACAGGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGTACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAAATGCAATGTATACATGATATACC]
consensusID : consensus_7253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1211 fasta sequence
[ACCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTGGGGTGGCCGACGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGTACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAAATGCAATGTATACATGATATACCGGTTGTTATCGTTGTTGTTGCTGTTGTTGACTTTGTTCTGTCCATTGATGCATTGCAAGGTCAAATATAGGAGCACA]
[+] EMBL AK069376 [ACCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAGCGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTGGGGTGGCCGACGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCGAAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCGCACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCCGTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGCGCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAGATGTTCGTCGAGTCCTGCAAGCGGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGTACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAAATGCAATGTATACATGATATACCGGTTGTTATCGTTGTTGTTGCTGTTGTTGACTTTGTTCTGTCCATTGATGCATTGCAAGGTCAAATATAGGAGCACA]
[+] EMBL CB678748 [ CCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCGGGCCGCCGAAGCAGGAACAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACGGGGCCCCGCCCGTCTCGGGACTCGAGTACGACGACACCGCGCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCGCCGCCGACCCCGAACGCGAGCGCGCCGCCGAAGGAGACCACGCCGACGCCAAGCCGCCTTCCCCA ]
[+] EMBL OSR14371A [ CGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCCCGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACGAGCTCCGGCGCCGACTCGTCCCCGCCCGTTTCGGGCCTCGACTACGACGACACCGCCCTCACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGNCGACCCCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7253#0 -CCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCC 59
consensus_7253#1 ACCCCTCGTCTCCGCAAACTCGACGCGCCACTCGACAGCGACCCCGCAGCCGATCCATCC 60
***********************************************************
consensus_7253#0 CGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACG 119
consensus_7253#1 CGCCGCCGAAGCAGCAGCAACCGCCACGGTGCGCCGCCGCCGCCGGTACCGATGTCGACG 120
************************************************************
consensus_7253#0 AGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTC 179
consensus_7253#1 AGCTCCGGCGCCGACTCGTCCCCGCCCGTCTCGGGCCTCGACTACGACGACACCGCCCTC 180
************************************************************
consensus_7253#0 ACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAG 239
consensus_7253#1 ACCCTCGCCCTCCCCGGCTCCTCCTCCTCCTCCTCCTCCACCGCCGACCCCGAACGCAAG 240
************************************************************
consensus_7253#0 CGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTG 299
consensus_7253#1 CGCGCCGCCCACGCCGACCACGCCGACGCCAAGCCGCCTTCCCCAAAGGCGCGGGCGGTG 300
************************************************************
consensus_7253#0 GGGTGGCCGCCGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCG 359
consensus_7253#1 GGGTGGCCGACGGTGAGGGCGTACAGGCGGAACGCGCTGCGGGAGGACTCCGCGAGGGCG 360
********* **************************************************
consensus_7253#0 AAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCG 419
consensus_7253#1 AAGCTGGTCAAGGTGGCCGTGGACGGCGCGCCGTACCTGCGCAAGGTGGACCTCGCGGCG 420
************************************************************
consensus_7253#0 CACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCC 479
consensus_7253#1 CACGCCGGCTACGCGCCCCTCCTCCGCGCGCTCCACGGCATGTTCGCCTCCTGCCTCGCC 480
************************************************************
consensus_7253#0 GTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGC 539
consensus_7253#1 GTCCGCGGCGGCGGCGGCGGCGACGGCGAGGGTACAAAGCTCGTCGACTTGGTCACCGGC 540
************************************************************
consensus_7253#0 GCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTC 599
consensus_7253#1 GCCGAGTACGTGCCCACCTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTC 600
************************************************************
consensus_7253#0 CCCTGGAAGTAAGCAACGCGTGTACACATCTCAATCAGTTCTTGCCGATTAATTCACCGA 659
consensus_7253#1 CCCTGGAAG--------------------------------------------------- 609
*********
consensus_7253#0 AATCAAATGCAAAATCTGATCCGATCAATCAACACAGGATGTTCGTCGAGTCCTGCAAGC 719
consensus_7253#1 --------------------------------------ATGTTCGTCGAGTCCTGCAAGC 631
**********************
consensus_7253#0 GGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGAT 779
consensus_7253#1 GGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGAT 691
************************************************************
consensus_7253#0 AATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCT 839
consensus_7253#1 AATCGATCCTACCACACGCAACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCT 751
************************************************************
consensus_7253#0 GTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTC 899
consensus_7253#1 GTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAGGCTTGGCTGTACAGGTCCTC 811
************************************************************
consensus_7253#0 CATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGT 959
consensus_7253#1 CATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGT 871
************************************************************
consensus_7253#0 ACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCT 1019
consensus_7253#1 ACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCT 931
************************************************************
consensus_7253#0 GCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGG 1079
consensus_7253#1 GCCGGATCACGGCCGGCCCGGTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGG 991
************************************************************
consensus_7253#0 GAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCT 1139
consensus_7253#1 GAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTTCAAGTTGTCAGCTACTTTCT 1051
************************************************************
consensus_7253#0 GTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAA 1199
consensus_7253#1 GTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAA 1111
************************************************************
consensus_7253#0 ATGCAATGTATACATGATATACC------------------------------------- 1222
consensus_7253#1 ATGCAATGTATACATGATATACCGGTTGTTATCGTTGTTGTTGCTGTTGTTGACTTTGTT 1171
***********************
consensus_7253#0 ----------------------------------------
consensus_7253#1 CTGTCCATTGATGCATTGCAAGGTCAAATATAGGAGCACA 1211
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||