These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1361 fasta sequence [GCTCCTGCATGTTTAGAACCACTTGTATCACGGATTCTGCCAACAATTGGGTCCATTTTAGAAAAGCCCAAGATCCAGCAGAACGGTCTTGCTGCAGGCTCACTGGACCTGTTGACGATGATACTGAAAAATGCTCCAACTACTGTGGTTAAGGCGATCTTTGATACATGTTTTACATCTATTATTCAAATCGTTCTTGAAAGTGATGACCATGGAGAGATGCAGAATGCGACAGAATGTTTGGCAGCATTTATATCGGGTGGGCGGCAAGAGTTGCTTCTCTGGGGTGGTGGACAAGGACGTACACTGAAGATGCTACTCGATGCAGCTTCAAGGTACATCTGAGTGCACCAAATGTTGATCAGTTTATCAACCTCTTACTTGCAATTCCTGCTCAGGGTTATAACAATTCACTTGCTTATATCATGTCTGAATGGTCACAGTTACAAAGTGAAATTCAAGGAGCCTATCAGATAAAGGTTACAACCACTGCATTAGCTCTTCTCATATCTACTCGTCATCCTGAGTTATCTAGGATTGAAGTCCAAGGGCATATTATTAAGACTAGCGCAGGTATAACTACACGGTCAAAAGCTAGGGTGGCTCCTGATCACTGGACCAAGATTCCACTCCCAGCTAAGATCTTCTCACTGTTAGCAGATACCTTAGCTGAAATTCAGGAACAAGCTGTTGGTGATGAAGACGATTGTGAAGAGGATAGTGACTGGGAAGAGATTCA-GAATGGTGATTCTAG-TATTCCACATGATATGATATACTCAGCATCAGTTCCTTCAAATGCTAAGCCATCAGTTGAGCATCTAAATGCAATGGCAAAAGTTTTTGATGAGGATGGCGACGGAAGTTATGATGATGACCTGGCAAAAGCTGACTCTCTTAATGAGGTGAAGCTGTCGGACTTTCTAACAAACATCTTTGTCAAACTGTGGGAGAGTGATCGGCCGCTTTTTGAATATCTTTGCCAGGCCCTAACAGATTCACAGAGGACTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTAAGATATCTACATTGGGTCCTATTCCACATTAGCCATTGGGTGAGCTTTGATGCTTAGTGTAGGTTTATCGATTAAGAGTTCTGTGTACAATGTGAGGCCAGTCCTCGAAGGCAGGAGTTGGTGGTGTGTGGTTTTGTTAGTGTAGGTTTATTTATCCAAATTTGTCTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTTGCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGTTCGTGAAAGAAGGCAAGGAAATTTTTTCAAAAAAAAAAAAA] [+] EMBL CB647971 [GCTCCTGCATGTTTAGAACCACTTGTATCACGGATTCTGCCAACAATTGGGTCCATTTTAGAAAAGCCCAAGATCCAGCAGAACGGTCTTGCTGCAGGCTCACTGGACCTGTTGACGATGATACTGAAAAATGCTCCAACTACTGTGGTTAAGGCGATCTTTGATACATGTTTTACATCTATTATTCAAATCGTTCTTGAAAGTGATGACCATGGAGAGATGCAGAATGCGACAGAATGTTTGGCAGCATTTATATCGGGTGGGCGGCAAGAGTTGCTTCTCTGGGGTGGTGGACAAGGACGTACACTGAAGATGCTACTCGATGCAGCTTCAAGGTACATCTGAGTGCACCAAATGTTGATCAGTTTATCAACCTCTTACTTGCAATTCCTGCTCAGGGTTATAACAATTCACTTGCTTATATCATGTCTGAATGGTCACAGTTACAAAGTGAAATTCAAGGAGCCTATCAGATAAAGGTTACAACCACTGCATTAGCTCTTCTCATATCTACTCGTCATCCTGAGTTATCTAGGATTGAAGTCCAAGGGCATATTATTAAGACTAGCGCAGGTATAACTACACGGTCAAAAGCTAGGGTGGCTCCTGATCACTGGACCAAGATTCCACTCCCAGCTAAGATCTTCTCACTGTTAGCAGATACCTTAGCTGAAATTCAGGAACAAGTTGTTGGTGATGAAGACGATTGTGAAGAGGATAGTGACTGGGAAGAGATTCA GAATGGTGATTCTAG TATTCCACATGATATGATATACTCAGCATCAGTTCC ] [+] EMBL CA765142 [ CCTGATCACTGGACCAAGATTCCACTCCCAGCTAAGATCTTCTCACTGTTAGCAGATACCTTGGCTGAAATTCAGGAACAAGCTGTTGGTGATGAAGACGATTGTGAAGAGGATAGTGACTGGGAAGAGATTCA GAATGGTGATTCTAG TATTCCACATGATATGATATACTCAGCATCAGTTCCTTCAAATGCTAAGCCATCAGTTGAGCATCTAAATGCAATGGCAAAAGTTTTTGATGAGGATGGCGACGGAAGTTATGATGATGACCTGGCAAAAGCTGACTCTCTTAATGAGGTGAAGCTGTCGGACTTTCTAACAAACATCTTTGTCAAACTGTGGGAGAGTGATCGGCCGCTTTTTGAATATCTTTGCCAGGCCCTAACAGATTCACAGAGGACTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTAAGATATCTACATTGGGTCCTATTCCACATTAGCCATTGGGTGAGCTTTGATGCTTAGTGTAGGTTTATCGATTAAGAGTTCTGTGTACAATGTGAGGCCAGTCCTCGAAGGCAGGAGTTGGTG ] [-] EMBL CA760067 [ ACAAACTGTTGGTTATTAAAACGATTGTGAAAAGGATAGTGACTGGGAAGAGAATCAGGAATGGTGATTTTAGTTATTCCCCATGATATGATATACTCAGCATCAGTTCCTTCAAATGCTAAGCCATCAGGTGAGCATCTAAATGCAATGGCCAAAGTTTTTGATGAGGATGGCGCCGGAAGTTATGATGATGACCTGGCAAAAGCTGACTCTCTTAATGAGGTGGAGCTGTCGGACTTTCTAACAAACATCTTTGTCAAACTGTGGGAGAGTGATCGGCCGCTTTTTGAATATCTTTGCCAGGCCCTAACAGATTCACAGAGGACTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTAAGATATCTACATTGGGTCCTATTCCACATTAGCCATTGGGTGAGCTTTGATGCTTAGTGTAGGTTTATCGATTAAGAGTTCTGTGTACAATGTGAGGCCAGTCCTCGAAGGCAGGAGTTGGTGGTGTGTGGTTTTGTTAGTGTAGGTTTATTTATCCAAATTTGTCTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTTGCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGTTCGTGAAAGAAGGCAAGGAAATTTTTTCAAAAAAAAAAAAA] consensusID : consensus_7259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [AGTGGAGCATTTAAATGCAATGGGGAAAGTTTTTGATGAGGATGACGACGGAAGTTATGATGATGACCTGGCAAAAGGTGACTTTTTTAATGAGGGGAAGCTGTTGGACTTTTTAACAAACATTTTTGTCAAATTGTGGGAGAGTGATCGGCTGCTTTTTGAATATTTTTGCCAGGCCCTAACAGATTCACAGAGGAGTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTGGGATATTTACATTTGGTCCTATTCCCCATTAGCCATTGGGGGAGCTTTGATGCTTAGTGTAGGTTTATTGATTAAGAGTTTTGTGTACAATGTGAGGGGAGTCCTTGAAGGCAGGAGTTGGGGGTGTGTGGTTTTGTTAGTGTAGGTTTATTTATCCAAATTTGTTTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTTGCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGTTCGTGAAAGAAGGCAAGGAAATTTTTTCATAGCGGTCCCCCCGTTCAGTGCTTTCAGGTCAATTGGAGGTC] [-] EMBL CB647972 [AGTGGAGCATTTAAATGCAATGGGGAAAGTTTTTGATGAGGATGACGACGGAAGTTATGATGATGACCTGGCAAAAGGTGACTTTTTTAATGAGGGGAAGCTGTTGGACTTTTTAACAAACATTTTTGTCAAATTGTGGGAGAGTGATCGGCTGCTTTTTGAATATTTTTGCCAGGCCCTAACAGATTCACAGAGGAGTGCTGTGGACAAAGTTTTGAGGAAATAAAGCGCATACATGATTGGGATATTTACATTTGGTCCTATTCCCCATTAGCCATTGGGGGAGCTTTGATGCTTAGTGTAGGTTTATTGATTAAGAGTTTTGTGTACAATGTGAGGGGAGTCCTTGAAGGCAGGAGTTGGGGGTGTGTGGTTTTGTTAGTGTAGGTTTATTTATCCAAATTTGTTTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTTGCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGTTCGTGAAAGAAGGCAAGGAAATTTTTTCATAGCGGTCCCCCCGTTCAGTGCTTTCAGGTCAATTGGAGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7259#0 GCTCCTGCATGTTTAGAACCACTTGTATCACGGATTCTGCCAACAATTGGGTCCATTTTA 60 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 GAAAAGCCCAAGATCCAGCAGAACGGTCTTGCTGCAGGCTCACTGGACCTGTTGACGATG 120 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 ATACTGAAAAATGCTCCAACTACTGTGGTTAAGGCGATCTTTGATACATGTTTTACATCT 180 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 ATTATTCAAATCGTTCTTGAAAGTGATGACCATGGAGAGATGCAGAATGCGACAGAATGT 240 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 TTGGCAGCATTTATATCGGGTGGGCGGCAAGAGTTGCTTCTCTGGGGTGGTGGACAAGGA 300 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 CGTACACTGAAGATGCTACTCGATGCAGCTTCAAGGTACATCTGAGTGCACCAAATGTTG 360 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 ATCAGTTTATCAACCTCTTACTTGCAATTCCTGCTCAGGGTTATAACAATTCACTTGCTT 420 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 ATATCATGTCTGAATGGTCACAGTTACAAAGTGAAATTCAAGGAGCCTATCAGATAAAGG 480 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 TTACAACCACTGCATTAGCTCTTCTCATATCTACTCGTCATCCTGAGTTATCTAGGATTG 540 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 AAGTCCAAGGGCATATTATTAAGACTAGCGCAGGTATAACTACACGGTCAAAAGCTAGGG 600 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 TGGCTCCTGATCACTGGACCAAGATTCCACTCCCAGCTAAGATCTTCTCACTGTTAGCAG 660 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 ATACCTTAGCTGAAATTCAGGAACAAGCTGTTGGTGATGAAGACGATTGTGAAGAGGATA 720 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 GTGACTGGGAAGAGATTCAGAATGGTGATTCTAGTATTCCACATGATATGATATACTCAG 780 consensus_7259#1 ------------------------------------------------------------ consensus_7259#0 CATCAGTTCCTTCAAATGCTAAGCCATCAGTTGAGCATCTAAATGCAATGGCAAAAGTTT 840 consensus_7259#1 ----------------------------AGTGGAGCATTTAAATGCAATGGGGAAAGTTT 32 *** ****** ************ ******* consensus_7259#0 TTGATGAGGATGGCGACGGAAGTTATGATGATGACCTGGCAAAAGCTGACTCTCTTAATG 900 consensus_7259#1 TTGATGAGGATGACGACGGAAGTTATGATGATGACCTGGCAAAAGGTGACTTTTTTAATG 92 ************ ******************************** ***** * ****** consensus_7259#0 AGGTGAAGCTGTCGGACTTTCTAACAAACATCTTTGTCAAACTGTGGGAGAGTGATCGGC 960 consensus_7259#1 AGGGGAAGCTGTTGGACTTTTTAACAAACATTTTTGTCAAATTGTGGGAGAGTGATCGGC 152 *** ******** ******* ********** ********* ****************** consensus_7259#0 CGCTTTTTGAATATCTTTGCCAGGCCCTAACAGATTCACAGAGGACTGCTGTGGACAAAG 1020 consensus_7259#1 TGCTTTTTGAATATTTTTGCCAGGCCCTAACAGATTCACAGAGGAGTGCTGTGGACAAAG 212 ************* ****************************** ************** consensus_7259#0 TTTTGAGGAAATAAAGCGCATACATGATTAAGATATCTACATTGGGTCCTATTCCACATT 1080 consensus_7259#1 TTTTGAGGAAATAAAGCGCATACATGATTGGGATATTTACATTTGGTCCTATTCCCCATT 272 ***************************** ***** ****** *********** **** consensus_7259#0 AGCCATTGGGTGAGCTTTGATGCTTAGTGTAGGTTTATCGATTAAGAGTTCTGTGTACAA 1140 consensus_7259#1 AGCCATTGGGGGAGCTTTGATGCTTAGTGTAGGTTTATTGATTAAGAGTTTTGTGTACAA 332 ********** *************************** *********** ********* consensus_7259#0 TGTGAGGCCAGTCCTCGAAGGCAGGAGTTGGTGGTGTGTGGTTTTGTTAGTGTAGGTTTA 1200 consensus_7259#1 TGTGAGGGGAGTCCTTGAAGGCAGGAGTTGGGGGTGTGTGGTTTTGTTAGTGTAGGTTTA 392 ******* ****** *************** **************************** consensus_7259#0 TTTATCCAAATTTGTCTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTT 1260 consensus_7259#1 TTTATCCAAATTTGTTTAGATCCGAAAGTGAACCAACTTAGAAAATACAAGCAAAAATTT 452 *************** ******************************************** consensus_7259#0 GCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGT 1320 consensus_7259#1 GCCATTTGTGTGTTCATGTGACGTGTTGGATGGTGTATTGTTTGTATCCATATGTTTGGT 512 ************************************************************ consensus_7259#0 TCGTGAAAGAAGGCAAGGAAATTTTTTCAAAAAAAAAAAAA------------------- 1361 consensus_7259#1 TCGTGAAAGAAGGCAAGGAAATTTTTTCATAGCGGTCCCCCCGTTCAGTGCTTTCAGGTC 572 ***************************** * consensus_7259#0 ----------- consensus_7259#1 AATTGGAGGTC 583 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||