These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 846 fasta sequence [TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATGTGCTTTACCCTGAT-ATAATTTAAGAAGTCGGGCAATGACAACAACACGCATGCAGGATATTGCCAT] [+] EMBL CB630689 [TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATGTGCTTTACCCTGAT ATAATTTAAGAAGTCGGGCAATGACAACAACACGCATGCAGGATATTGCCAT] [+] EMBL CB633651 [ tcAGCTTATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGANACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATGTGCTTTA CCTGATAATAATTTAAGAAGTCGGGCAAT ] consensusID : consensus_7264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 824 fasta sequence [TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCTATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATT] [+] EMBL CB634357 [TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCTATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATT] [+] EMBL CB634208 [ CTGTGTGCGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7264#0 TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGAT 60 consensus_7264#1 -----------------------TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGAT 37 ************************************* consensus_7264#0 GTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAA 120 consensus_7264#1 GTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAA 97 ************************************************************ consensus_7264#0 CCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAA 180 consensus_7264#1 CCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAA 157 ************************************************************ consensus_7264#0 TAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGA 240 consensus_7264#1 TAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGA 217 ************************************************************ consensus_7264#0 GATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAG 300 consensus_7264#1 GATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAG 277 ************************************************************ consensus_7264#0 CAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCG 360 consensus_7264#1 CAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCG 337 ************************************************************ consensus_7264#0 CTGCGAAAG--------------------------------------------------- 369 consensus_7264#1 CTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCC 397 ********* consensus_7264#0 ---------------------CAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGAC 408 consensus_7264#1 TTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGAC 457 *************************************** consensus_7264#0 GGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCA 468 consensus_7264#1 GGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCA 517 ************************************************************ consensus_7264#0 GGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGC 528 consensus_7264#1 GGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGC 577 ************************************************************ consensus_7264#0 CATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTAT 588 consensus_7264#1 CATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTAT 637 ************************************************************ consensus_7264#0 CGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTC 648 consensus_7264#1 CGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTC 697 ************************************************************ consensus_7264#0 GGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATT 708 consensus_7264#1 GGAGGCGGATGCTTGGCTATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATT 757 ***************** ****************************************** consensus_7264#0 CTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCA 768 consensus_7264#1 CTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCA 817 ************************************************************ consensus_7264#0 CGCTATTTTATGTGCTTTACCCTGATATAATTTAAGAAGTCGGGCAATGACAACAACACG 828 consensus_7264#1 CGCTATT----------------------------------------------------- 824 ******* consensus_7264#0 CATGCAGGATATTGCCAT 846 consensus_7264#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||