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Oryza sativa
cluster # 7264 cluster # 7264       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7264#0 length = 846 sequences # 2  
consensus_7264#1 length = 824 sequences # 2  

consensusID : consensus_7264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 846
fasta sequence
                              [TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATGTGCTTTACCCTGAT-ATAATTTAAGAAGTCGGGCAATGACAACAACACGCATGCAGGATATTGCCAT]

[+] EMBL CB630689             [TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATGTGCTTTACCCTGAT ATAATTTAAGAAGTCGGGCAATGACAACAACACGCATGCAGGATATTGCCAT]
[+] EMBL CB633651             [     tcAGCTTATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGANACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATGTGCTTTA CCTGATAATAATTTAAGAAGTCGGGCAAT                              ]


>consensus_7264#0 TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGAT GTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAA CCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAA TAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGA GATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAG CAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCG CTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGG TATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAA GGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATA TCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCAC ATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGC TTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAA GAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATG TGCTTTACCCTGATATAATTTAAGAAGTCGGGCAATGACAACAACACGCATGCAGGATAT TGCCAT



consensusID : consensus_7264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 824
fasta sequence
                              [TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCTATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATT]

[+] EMBL CB634357             [TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCTATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATT]
[+] EMBL CB634208             [ CTGTGTGCGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCAC      ]


>consensus_7264#1 TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCA ACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGG TGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGG GTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACT GGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCG ACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCA AGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCA AAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTC CAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCG TACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGT TTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAA CCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCTATACA GGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCA TCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7264#0      TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGAT 60
consensus_7264#1      -----------------------TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGAT 37
                                             *************************************

consensus_7264#0      GTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAA 120
consensus_7264#1      GTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAA 97
                      ************************************************************

consensus_7264#0      CCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAA 180
consensus_7264#1      CCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAA 157
                      ************************************************************

consensus_7264#0      TAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGA 240
consensus_7264#1      TAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGA 217
                      ************************************************************

consensus_7264#0      GATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAG 300
consensus_7264#1      GATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAG 277
                      ************************************************************

consensus_7264#0      CAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCG 360
consensus_7264#1      CAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCG 337
                      ************************************************************

consensus_7264#0      CTGCGAAAG--------------------------------------------------- 369
consensus_7264#1      CTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCC 397
                      *********                                                   

consensus_7264#0      ---------------------CAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGAC 408
consensus_7264#1      TTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGAC 457
                                           ***************************************

consensus_7264#0      GGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCA 468
consensus_7264#1      GGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCA 517
                      ************************************************************

consensus_7264#0      GGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGC 528
consensus_7264#1      GGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGC 577
                      ************************************************************

consensus_7264#0      CATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTAT 588
consensus_7264#1      CATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTAT 637
                      ************************************************************

consensus_7264#0      CGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTC 648
consensus_7264#1      CGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTC 697
                      ************************************************************

consensus_7264#0      GGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATT 708
consensus_7264#1      GGAGGCGGATGCTTGGCTATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATT 757
                      ***************** ******************************************

consensus_7264#0      CTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCA 768
consensus_7264#1      CTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCA 817
                      ************************************************************

consensus_7264#0      CGCTATTTTATGTGCTTTACCCTGATATAATTTAAGAAGTCGGGCAATGACAACAACACG 828
consensus_7264#1      CGCTATT----------------------------------------------------- 824
                      *******                                                     

consensus_7264#0      CATGCAGGATATTGCCAT 846
consensus_7264#1      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)