These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1029 fasta sequence [ACAGTCCAGGACTGGAGCTGTGGTCCGGTGGAGGTTATAGAGAAGAAGCAGAGAGCAAGAATGGCTGGGCTGTATGAGAGACCGTCGGAGACGTACACCAAGAAGCGGCCTCGGTACCCTGACGCTTGGTTCTCCAAGCTCGCCGCCCTCACAGCCGGCCACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTGCACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCGAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTCTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGCCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCCTGTTTAGATGAAACTATTTTTAAGTCCCTATCATATCGGATGTTTGAAAATTAATTATAAATATTAAAC] [+] EMBL AK101454 [ACAGTCCAGGACTGGAGCTGTGGTCCGGTGGAGGTTATAGAGAAGAAGCAGAGAGCAAGAATGGCTGGGCTGTATGAGAGACCGTCGGAGACGTACACCAAGAAGCGGCCTCGGTACCCTGACGCTTGGTTCTCCAAGCTCGCCGCCCTCACAGCCGGCCACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTGCACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCGAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTCTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGCCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCCTGTTTAGATGAAACTATTTTTAAGTCCCTATCATATCGGATGTTTGAAAATTAATTATAAATATTAAAC] [+] EMBL CB620412 [ acgcTATAGAGAAGAAGCAGAGAGCAAGAATGGCTGGGCTGTATGAGAGACCGTCGGAGACGTACACCAAGAAGCGGCCTCGGTACCCTGACGCTTGGTTCTCCAAGCTCGCCGCCCTCACCGCCGGCCACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTGCACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCAAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTCTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGGCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTG ] consensusID : consensus_7267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence [CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCAAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTTTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGGCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCCCCAGAATAAATTCCGGAGAGACGACTGACTGCTTCGGGGTTGTGCACGGTTGTGATGTTGCTTTATGTTTGCCGAATAAGTTCGAGCTGGTATTGGATACTATACTGCGCGGTATCTGCAATTCTGCATTTTATATGCCTAAAAAAAAGA] [-] EMBL CB620413 [CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCAAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTTTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGGCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCCCCAGAATAAATTCCGGAGAGACGACTGACTGCTTCGGGGTTGTGCACGGTTGTGATGTTGCTTTATGTTTGCCGAATAAGTTCGAGCTGGTATTGGATACTATACTGCGCGGTATCTGCAATTCTGCATTTTATATGCCTAAAAAAAAGA] consensusID : consensus_7267#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [GGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCCTGTTTAGATGAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF314512 [GGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCCTGTTTAGATGAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7267#0 ACAGTCCAGGACTGGAGCTGTGGTCCGGTGGAGGTTATAGAGAAGAAGCAGAGAGCAAGA 60 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 ------------------------------------------------------------ consensus_7267#0 ATGGCTGGGCTGTATGAGAGACCGTCGGAGACGTACACCAAGAAGCGGCCTCGGTACCCT 120 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 ------------------------------------------------------------ consensus_7267#0 GACGCTTGGTTCTCCAAGCTCGCCGCCCTCACAGCCGGCCACCACCGCGCCTGGGACGCC 180 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 ------------------------------------------------------------ consensus_7267#0 GGCTGCGGCACCGGCCAGGCCTCCATCAGCATCGCGGAGCACTACGACAGCGTGGTCGCG 240 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 ------------------------------------------------------------ consensus_7267#0 ACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTG 300 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 ------------------------------------------------------------ consensus_7267#0 CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCGAGGGCTCG 360 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCAAGGGCTCG 60 consensus_7267#0 CTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTCTACGCC 420 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 CTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTTTACGCC 120 consensus_7267#0 GTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTAC 480 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 GTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTAC 180 consensus_7267#0 GAGATCCACCCGTTCGAGGACAAGCTGCACGGCCAGCTGTACCCGGCCATGCGCCCGTAT 540 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 GAGATCCACCCGTTCGAGGACAAGCTGCACGGGCAGCTGTACCCGGCCATGCGCCCGTAT 240 consensus_7267#0 ATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAG 600 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 ATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAG 300 consensus_7267#0 CCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACG 660 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 CCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACG 360 consensus_7267#0 CTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAG 720 consensus_7267#2 ------------------------------------------------------------ consensus_7267#1 CTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAG 420 consensus_7267#0 GGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGA 780 consensus_7267#2 -----------------GGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGA 43 consensus_7267#1 GGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGA 480 ******************************************* consensus_7267#0 GACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAA 840 consensus_7267#2 GACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAA 103 consensus_7267#1 GACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAA 540 ************************************************************ consensus_7267#0 GTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTG 900 consensus_7267#2 GTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTG 163 consensus_7267#1 GTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTG 600 ************************************************************ consensus_7267#0 TTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCC 960 consensus_7267#2 TTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCC 223 consensus_7267#1 TTTCGTTGCGATAGATTGGTGACTTCCCCAGAATAAATTCCGGAGAGACGACTGACTGCT 660 ************************** **************************** * consensus_7267#0 T---GTTTAGATGAAACTATTTTTAAGTCCCTATCATATCGGATGTTTGAAAATTAATTA 1017 consensus_7267#2 T---GTTTAGATGAAAAAAAAAAAAAAAAAAAAAA------------------------- 255 consensus_7267#1 TCGGGGTTGTGCACGGTTGTGATGTTGCTTTATGTTTGCCGAATAAGTTCGAGCTGGTAT 720 * * ** consensus_7267#0 TAAATATTAAAC--------------------------------------------- 1029 consensus_7267#2 --------------------------------------------------------- consensus_7267#1 TGGATACTATACTGCGCGGTATCTGCAATTCTGCATTTTATATGCCTAAAAAAAAGA 777 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||