These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 978 fasta sequence [TTTTAACGGNTGAGGGAGCCTTTTCCTTTACCCAATTTTACACCCTGTTTTGCAGTGGAGGGACACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATCTGGCGCGAATCATAAATGGTGAGAACTCGGGTATATTGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAG-CCATGCCCA-CCACCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCTTCGGCCGGGGTTATGATCCCACAAGAGATGACCTCAGGATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGATAGAAGGTGAATGGGTGGCTTAGAGCTTCTTGGAGGGG--GTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGGATGAGAAGCCAGTGATAGAGGAGGATGATCCACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTAGTAACCCCCTATACTTCCGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCATCTTTAGTCCCGGGTGAAATAACCGGGACTAAAAATGTATCTTTAGTCCCGGTTCGTATCACCAACCAGGATTAAAAATGGCGATGGCAGCGCCAGTCCCGGTTAGCAACTGGGATTAAAGATGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTGTTTTTTTTCATTATTTTTTCCCAAATCGAGTTGGAACTACACAA] [+] EMBL CF292357 [TTTTAACGGNTGAGGGAGCCTTTTCCTTTACCCAATTTTACACCCTGTTTTGCAGTGGAGGGACACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATCTGGCGCGAATCATAAATGGTGAGAACTCGGGTATATTGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAAATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAG CCATGCCCA CCACCGCAGAGGATCAGAAACAGTGGAAGGTGTTGGAAGTCCAGCGGATCAATGC ] [+] EMBL AK066662 [ CGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAG CCATGCCCA CCACCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCTTCGGCCGGGGTTATGATCCCACAAGAGATGACCTCAGGATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGATAGAAGGTGAATGGGTGGCTTAGAGCTTCTTGGAGGGG GTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGGATGAGAAGCCAGTGATAGAGGAGGATGATCCACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTAGTAACCCCCTATACTTCCGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCATCTTTAGTCCCGGGTGAAATAACCGGGACTAAAAATGTATCTTTAGTCCCGGTTCGTATCACCAACCAGGATTAAAAATGGCGATGGCAGCGCCAGTCCCGGTTAGCAACTGGGATTAAAGATGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTGTTTTTTTTCATTATTTTTTCCCAAATCGAGTTGGAACTACACAA] [-] EMBL CA759928 [ GATTGGAGGGCGTGGCGCAGGGAAGGCGATCGATCGACNGAAGCCCATGCCCANCCNCCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTNCTNGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTGGTCTTCGGCCGGGGTTATGATCCCACAAGAGATGACCTCAGGATCAGCACTGACCCTAATGCGATGGTCGAGCTCATAGAGTCCTACCACGAGATGGGTCTGATAGAAGGTGAATGGGTGGCTTACAGCTTCTTGGAGGGGGTGTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGGATGAGAAGCCAGTGATAGAGGAGGATGATACACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTGGTAACCCCCTATACTTCCGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCATCTTTAGTCCCGGGTGAAATAACCGGGACTAAAAATGTATCTTTAGTCCCGGTTGGTATCACCAACCCGGATTAAAAATGGCGATGGCAACGCCAGTCCCGGTTAGCAACTGGGATTACAGATGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTG TTTTTTTCATTATTTTTTCCCAAATCGAGTTGGAACTAaaa ] consensusID : consensus_7270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATCTGGCGCGAATCATAAATGGTGAGAACTCGGGTAGATTGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCTTCGGCCGGGGTTATGATCCCACAAGTACGTGATCCGATCCTCGATGTCCCTTTCCTGCACAGTGAGATCAAGTCTTCCGATCTGGCTGATCCTCGGTATGTTTTGTGCAGGAGATGACCTCAGGATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGA] [-] EMBL CF292356 [CACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATCTGGCGCGAATCATAAATGGTGAGAACTCGGGTAGATTGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCTTCGGCCGGGGTTATGATCCCACAAGTACGTGATCCGATCCTCGATGTCCCTTTCCTGCACAGTGAGATCAAGTCTTCCGATCTGGCTGATCCTCGGTATGTTTTGTGCAGGAGATGACCTCAGGATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7270#0 TTTTAACGGNTGAGGGAGCCTTTTCCTTTACCCAATTTTACACCCTGTTTTGCAGTGGAG 60 consensus_7270#1 ------------------------------------------------------------ consensus_7270#0 GGACACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATC 120 consensus_7270#1 ---CACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATC 57 ********************************************************* consensus_7270#0 TGGCGCGAATCATAAATGGTGAGAACTCGGGTATATTGAGCCGCGCGCGGCGGCAGAAGG 180 consensus_7270#1 TGGCGCGAATCATAAATGGTGAGAACTCGGGTAGATTGAGCCGCGCGCGGCGGCAGAAGG 117 ********************************* ************************** consensus_7270#0 CAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAA 240 consensus_7270#1 CAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAA 177 ************************************************************ consensus_7270#0 CCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGC 300 consensus_7270#1 CCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGC 237 ************************************************************ consensus_7270#0 GCAGGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGT 360 consensus_7270#1 GCAGGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGT 297 ************************************************************ consensus_7270#0 GGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACG 420 consensus_7270#1 GGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACG 357 ************************************************************ consensus_7270#0 ATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCT 480 consensus_7270#1 ATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCT 417 ************************************************************ consensus_7270#0 TCGGCCGGGGTTATGATCCCACAAG-AGATGACCTCAGGATCAGCACTGACCCTACTGCG 539 consensus_7270#1 TCGGCCGGGGTTATGATCCCACAAGTACGTGATCC---GATCCTCGATGTCCCTTTCCTG 474 ************************* * *** * **** * ** **** * consensus_7270#0 ATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGATAGAAGGTGAATGGGTGGCT 599 consensus_7270#1 CACAGTGAGATCA---AGTCTTCC---------GATCTGGCTGATCCTCGGTATGT---T 519 *** *** *** * * * **** ** * * ** * consensus_7270#0 TAGAGCTTCTTGGAGGGGGTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGGATGAG 659 consensus_7270#1 TTGTGCA----GGAGATGACCTCAGGATCAGCACTG----ACCCTACTGCGATGGTCGAG 571 * * ** **** * ** * * ** * ** ******* *** consensus_7270#0 AAGCCAGTGATAGAGGAGGATGATCCACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTAGT 719 consensus_7270#1 C------TCATAGAGTACTACCACAAGATGGGTCTGA----------------------- 602 * ****** * * * *** ** consensus_7270#0 AACCCCCTATACTTCCGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCAT 779 consensus_7270#1 ------------------------------------------------------------ consensus_7270#0 CTTTAGTCCCGGGTGAAATAACCGGGACTAAAAATGTATCTTTAGTCCCGGTTCGTATCA 839 consensus_7270#1 ------------------------------------------------------------ consensus_7270#0 CCAACCAGGATTAAAAATGGCGATGGCAGCGCCAGTCCCGGTTAGCAACTGGGATTAAAG 899 consensus_7270#1 ------------------------------------------------------------ consensus_7270#0 ATGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTGTTTTTTTTCATTATTTTTTCCCAAA 959 consensus_7270#1 ------------------------------------------------------------ consensus_7270#0 TCGAGTTGGAACTACACAA 978 consensus_7270#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||