cluster # 7277

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Oryza sativa
cluster # 7277 cluster # 7277 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7277#0 length = 958 sequences # 2

consensus_7277#1 length = 673 sequences # 1
consensus_7277#2 length = 137 sequences # 1

consensusID : consensus_7277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 958
fasta sequence

                              [CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGAGGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAAGGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTATGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCCACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCC-CACAACTCAAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAGCGCCATTGCCATCACCAGCAGCCGTGT--CGCACCACCCCTGGATGCAGCTCCTCAGAGGACAACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCCTCTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACT]

[+] EMBL AK066426             [CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGAGGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAAGGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTATGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCCACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCC CACAACTCAAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAGCGCCATTGCCATCACCAGCAGCCGTGT  CGCACCACCCCTGGATGCAGCTCCTCAGAGGACAACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCCTCTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACT]
[-] EMBL CA760986             [                                                                                                                                                                                                                                                                                     CTTCAGCACACCTCCNCACAACTCAAGAGGACGCCATCACTATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAGCACCATTGCCATCACCAGCAGCCGTGTCGCGCACCACCCCTGGATGCAGCTCCCCAGAGGACAACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAAaaaaaaa                     ]




>consensus_7277#0
CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGA
GGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAA
GGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTA
TGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCC
ACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCCCACAACTC
AAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAG
CGCCATTGCCATCACCAGCAGCCGTGTCGCACCACCCCTGGATGCAGCTCCTCAGAGGAC
AACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACA
AGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACC
TCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACA
AGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCCTC
TTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGT
CAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCC
AACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACT
GTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATG
AATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACT

consensusID : consensus_7277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [AGGAGAGGACGAGACAAGGGGGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCCANCCCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAATATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTACTTGTGTTTTTGCTATCTTTTGCACCTAAATCTGACATTGTTTCATATTTATAGTGCATAAGAAATCGAGAGCAGCTATGACTGAGCAAAAAAAAAAAAAAAA]

[-] EMBL CA761235             [AGGAGAGGACGAGACAAGGGGGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCCANCCCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAATATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTACTTGTGTTTTTGCTATCTTTTGCACCTAAATCTGACATTGTTTCATATTTATAGTGCATAAGAAATCGAGAGCAGCTATGACTGAGCAAAAAAAAAAAAAAAA]




>consensus_7277#1
AGGAGAGGACGAGACAAGGGGGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCA
GGACCCCCANCCCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGA
TCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTAT
GGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAG
TTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTA
CCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTT
AGTGAGGTGGTTAATATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCT
GGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCAT
CAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAACTCTTGTGTTTCCTTCC
TCTCCACTTGCCATTTCACTCAGCTTGGTACTTGTGTTTTTGCTATCTTTTGCACCTAAA
TCTGACATTGTTTCATATTTATAGTGCATAAGAAATCGAGAGCAGCTATGACTGAGCAAA
AAAAAAAAAAAAA

consensusID : consensus_7277#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [TGGGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGGTTATTCAATGATGGAATCATGGAAACTGGCCGAATCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAAAAAAAAAA]

[+] EMBL BI797939             [TGGGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGGTTATTCAATGATGGAATCATGGAAACTGGCCGAATCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAAAAAAAAAA]




>consensus_7277#2
TGGGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGGTTATTCAATGATG
GAATCATGGAAACTGGCCGAATCCATCAAACATCTTTGGTGATATATATAAGTTCACTGC
ATTGGAGAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGA 60
                                                                                  

consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      GGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAA 120
                                                                                  

consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      GGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTA 180
                                                                                  

consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      TGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCC 240
                                                                                  

consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      ACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCCCACAACTC 300
                                                                                  

consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      AAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAG 360
                                                                                  

consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      CGCCATTGCCATCACCAGCAGCCGTGTCGCACCACCCCTGGATGCAGCTCCTCAGAGGAC 420
                                                                                  

consensus_7277#1      ----------------------------AGGAGAGGACGAGACAAGGGGGGGTTTGCACA 32
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      AACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACA 480
                                                                                  

consensus_7277#1      AGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCCANCCCCCAAGCCCAGATCGCACCA 92
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      AGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCC--AAGCCCAGATCGCACCA 538
                                                                                  

consensus_7277#1      CCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCA 152
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      CCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCA 598
                                                                                  

consensus_7277#1      CAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCC 212
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      CAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCC 658
                                                                                  

consensus_7277#1      TTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAG 272
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      TCTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAG 718
                                                                                  

consensus_7277#1      GTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATC 332
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      GTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATC 778
                                                                                  

consensus_7277#1      CCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAATATATCTGGTTTTTACCA 392
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      CCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCA 838
                                                                                  

consensus_7277#1      CTGTGGTGTTCAGAAGTTGTAGTTGCCTGG-ACAAGCAGGTTTACTCGGGTTATTCAATG 451
consensus_7277#2      -TG-GGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGG-TTATTCAATG 57
consensus_7277#0      CTGTGGTGTTCAGAAGTTGTAGTTGCCTGG-ACAAGCAGGTTTACTCGGGTTATTCAATG 897
                       ** ******   ** ***** ******** **** ** ********** **********

consensus_7277#1      ATG-AATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCA 510
consensus_7277#2      ATGGAATCATGGAAACTGGCCGAAT-CCATCAAACATCTTTGGTGATATATATAAGTTCA 116
consensus_7277#0      ATG-AATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCA 956
                      *** ************* ******* **********************************

consensus_7277#1      CTGCATTGGAGAACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTA 570
consensus_7277#2      CTGCATTGGAGAAAAAAAAAA--------------------------------------- 137
consensus_7277#0      CT---------------------------------------------------------- 958
                      **                                                          

consensus_7277#1      CTTGTGTTTTTGCTATCTTTTGCACCTAAATCTGACATTGTTTCATATTTATAGTGCATA 630
consensus_7277#2      ------------------------------------------------------------
consensus_7277#0      ------------------------------------------------------------
                                                                                  

consensus_7277#1      AGAAATCGAGAGCAGCTATGACTGAGCAAAAAAAAAAAAAAAA 673
consensus_7277#2      -------------------------------------------
consensus_7277#0      -------------------------------------------