These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 958 fasta sequence [CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGAGGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAAGGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTATGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCCACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCC-CACAACTCAAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAGCGCCATTGCCATCACCAGCAGCCGTGT--CGCACCACCCCTGGATGCAGCTCCTCAGAGGACAACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCCTCTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACT] [+] EMBL AK066426 [CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGAGGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAAGGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTATGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCCACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCC CACAACTCAAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAGCGCCATTGCCATCACCAGCAGCCGTGT CGCACCACCCCTGGATGCAGCTCCTCAGAGGACAACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCCTCTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACT] [-] EMBL CA760986 [ CTTCAGCACACCTCCNCACAACTCAAGAGGACGCCATCACTATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAGCACCATTGCCATCACCAGCAGCCGTGTCGCGCACCACCCCTGGATGCAGCTCCCCAGAGGACAACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAAaaaaaaa ] consensusID : consensus_7277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [AGGAGAGGACGAGACAAGGGGGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCCANCCCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAATATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTACTTGTGTTTTTGCTATCTTTTGCACCTAAATCTGACATTGTTTCATATTTATAGTGCATAAGAAATCGAGAGCAGCTATGACTGAGCAAAAAAAAAAAAAAAA] [-] EMBL CA761235 [AGGAGAGGACGAGACAAGGGGGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCCANCCCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAATATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTACTTGTGTTTTTGCTATCTTTTGCACCTAAATCTGACATTGTTTCATATTTATAGTGCATAAGAAATCGAGAGCAGCTATGACTGAGCAAAAAAAAAAAAAAAA] consensusID : consensus_7277#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [TGGGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGGTTATTCAATGATGGAATCATGGAAACTGGCCGAATCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAAAAAAAAAA] [+] EMBL BI797939 [TGGGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGGTTATTCAATGATGGAATCATGGAAACTGGCCGAATCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGA 60 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 GGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAA 120 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 GGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTA 180 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 TGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCC 240 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 ACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCCCACAACTC 300 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 AAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAG 360 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 CGCCATTGCCATCACCAGCAGCCGTGTCGCACCACCCCTGGATGCAGCTCCTCAGAGGAC 420 consensus_7277#1 ----------------------------AGGAGAGGACGAGACAAGGGGGGGTTTGCACA 32 consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 AACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACA 480 consensus_7277#1 AGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCCANCCCCCAAGCCCAGATCGCACCA 92 consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 AGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCC--AAGCCCAGATCGCACCA 538 consensus_7277#1 CCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCA 152 consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 CCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCA 598 consensus_7277#1 CAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCC 212 consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 CAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCC 658 consensus_7277#1 TTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAG 272 consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 TCTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAG 718 consensus_7277#1 GTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATC 332 consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 GTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATC 778 consensus_7277#1 CCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAATATATCTGGTTTTTACCA 392 consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 CCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCA 838 consensus_7277#1 CTGTGGTGTTCAGAAGTTGTAGTTGCCTGG-ACAAGCAGGTTTACTCGGGTTATTCAATG 451 consensus_7277#2 -TG-GGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGG-TTATTCAATG 57 consensus_7277#0 CTGTGGTGTTCAGAAGTTGTAGTTGCCTGG-ACAAGCAGGTTTACTCGGGTTATTCAATG 897 ** ****** ** ***** ******** **** ** ********** ********** consensus_7277#1 ATG-AATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCA 510 consensus_7277#2 ATGGAATCATGGAAACTGGCCGAAT-CCATCAAACATCTTTGGTGATATATATAAGTTCA 116 consensus_7277#0 ATG-AATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCA 956 *** ************* ******* ********************************** consensus_7277#1 CTGCATTGGAGAACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTA 570 consensus_7277#2 CTGCATTGGAGAAAAAAAAAA--------------------------------------- 137 consensus_7277#0 CT---------------------------------------------------------- 958 ** consensus_7277#1 CTTGTGTTTTTGCTATCTTTTGCACCTAAATCTGACATTGTTTCATATTTATAGTGCATA 630 consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 ------------------------------------------------------------ consensus_7277#1 AGAAATCGAGAGCAGCTATGACTGAGCAAAAAAAAAAAAAAAA 673 consensus_7277#2 ------------------------------------------- consensus_7277#0 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||