Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7278 cluster # 7278       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7278#0 length = 1054 sequences # 4  

consensusID : consensus_7278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1054
fasta sequence
                              [GTGAGGAAAGGCAGCGAGCANCTCTGTCAAATCCGTGCAATCTCCGCCATCTCCCTCTCACCATCTTCCTCCTCTCTCCCCTTATCCCAAATTTCCCCATCAATCGCCACCCGCGCCCAATTCCCCCACTCGATTCGATTCGACTCGGTCGGGATCCCCCCATGGCGAGCGGCG-CTCGTAGCGACGAAATCGAGCCAGCGAGTGGATGCGGCGCGCGCCATGG-NGCCCTCGGTGGCGGTGGCGGTGGCGGTGGCGGAGGCGAGGGCGGATCGGCGTCGA-GGGTCGGGGAC-TGGGGTGTTGAC-TTGGGGGAAGGGTNGGACTGGAGGAGCATCCCGAAGCTCCTCTCCTCCGCCTGCCTCTTCATCTGCTCCGGAGGCTGTTTTGGATGCTGTGATAAGGCTGTGAGACATGTAGGACAGCTTTC-AAAGAGTTTAATTACTCCGGACCAAAATTACACCATTGGGGACGAACT-CTGGAGCACAACCACC-ATCGAGGTCGAACAGTCATGGGCTCTTGATCAGCAAGGAGTGGGGAGCAGT-CAGGGCCCTACTGAATTTGTCAATCATGGTCTTGTTCTTTGGAAGGAGATTAGGAAGGACTGGACTGCGAAAACAAGGCAAATACCTGAGACGAAACAGATTCGCGAACCAATATTGAGTTGGAATGCAGCCTATGAGAGTTTGCTTGGATCCAATAAGCCGTTTCATCAGCCCATCCCTCTACATGAGATGGTTGATTTTCTTGTGGACATCTGGGAACAAGAGGGGCTGTATGACTAGCACAAATGTTTTTAATAATAGTAACATAGTTGTAGGCTTGATGATGATGAGGTAACTTTGAGGTAACTTGGAGGGTTCGGCCTGCCATACTTGTTTTTGAATGGCGGCCAGTTGTACTTGCTTAATACAAGGTTGTGGTTGTTGTAATGTGAGAAAGGTCGAGATTTAGACGCTTTGTCGAATTGTCAAAGAAAGCAAAGCCAGAGAGAAATTTGTAACACTAACTCATGGACATTAATGTGATGTGTGTCGATAGAGAAGTATATACTAAAAAG]

[+] EMBL OSC607               [GTGAGGAAAGGCAGCGAGCANCTCTGTCAAATCCGTGCAATCTCCGCCATCTCCCTCTCACCATCTTCCTCCTCTCTCCCCTTATCCCAAATTTCCCCATCAATCGCCACCCGCGCCCAATTCCCCCACTCGATTCGATTCGACTCGGTCGGGATCCCCCCATGGCGAGCGGCG CTCGTAGCGACGAAATCGAGCCAGCGAGTGGATGCGGCGCGCGCCATGG NGCCCTCGGTGGCGGTGGCGGTGGCGGTGGCGGAGGCGAGGGCGGATCGGCGTCGAGGGGTCGGGGACTTGGGGTGTTGACTTTGGGGGAAGGGTNGGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK106113             [                   caCTCTGTCAAATCCGTGCAATCTCCGCCATCTCCCTCTCACCATCTTCCTCCTCTCTCCCCTTATCCCAAATTTCCCCATCAATCGCCACCCGCGCCCAATTCCCCCACTCGATTCGATTCGACTCGGTCGGGATCCCCCCATGGCGAGCGGCGCCTCGTAGCGACGAAATCGAGCCAGCGAGTGGATGCGGCGCGCGCCATGGCGGCCCTCGGTGGCGGTGGCGGTGGCGGTGGCGGAGGCGAGGGCGGATCGGCGTCGA GGGTCGGGGAC TGGGGTGTTGAC TTGGGGGAGGGGTGGGACTGGAGGAGCATCCCGAAGCTCCTCTCCTCCGCCTGCCTCTTCATCTGCTCCGGAGGCTGTTTTGGATGCTGTGATAAGGCTGTGAGACATGTAGGACAGCTTTC AAAGAGTTTAATTACTCCGGACCAAAATTACACCATTGGGGACGAACT CTGGAGCACAACCACC ATCGAGGTCGAACAGTCATGGGCTCTTGATCAGCAAGGAGTGGGGAGCAGT CAGGGCCCTACTGAATTTGTCAATCATGGTCTTGTTCTTTGGAAGGAGATTAGGAAGGACTGGACTGCGAAAACAAGGCAAATACCTGAGACGAAACAGATTCGCGAACCAATATTGAGTTGGAATGCAGCCTATGAGAGTTTGCTTGGATCCAATAAGCCGTTTCATCAGCCCATCCCTCTACATGAGATGGTTGATTTTCTTGTGGACATCTGGGAACAAGAGGGGCTGTATGACTAGCACAAATGTTTTTAATAATAGTAACATAGTTGTAGGCTTGATGATGATGAGGTAACTTTGAGGTAACTTGGAGGGTTCGGCCTGCCATACTTGTTTTTGAATGGCGGCCAGTTGTACTTGCTTAATACAAGGTTGTGGTTGTTGTAATGTGAGAAAGGTCGAGATTTAGACGCTTTGTCGAATTGTCAAAGAAAGCAAAGCCAGAGAGAAATTTGTAACACTAACTCATGGACATTAATGTGATGTGTGTCG                       ]
[+] EMBL AU082321             [                                                                                                                                                                                                                                                                                                                                                                                                                                  GGNCAGCTTTCAAAAGAGTTTAATTACCCCGGACCAAAATTACACCATTGGGGACGAACTCCTGGAGCACAACCACCNATCGAGGTCGAACAGTCATGGGNTCTTGATCAGCAAGGAGTGGGGAGCAGTACAGGGCCCTACTGAATTTGNCAATCATGGTCTTGTTCTTTCGAAGGAGATTAGGAAGGACTGGACTGCGAAAACAAGGCAAATNCCTGAGACGAAACAGATTCGCGAACCAATATTGAGTTGGAATGCAGCCTATGAGAGTTTGCTTGGATCCAATAAGCCGTTTCATCAGCCCATCCCTCTACATGAGATGNTTGATTTTCTTGTGGACATCTGGGAACAAGAGGGGCTGTATGACTAGCACAAATGTTTTTAATAATAGTAACATAGTTGTAGGCTTGATGATGATGAGGTAACTTTGAGGTAACTTGGAGGGTTCGGCCTGCCATACTTGTTTTTGAATGGCGGCCAGTTGTACTTGCTTAATACAAGGTTGTGGTTGTTGTAATGTGAGAAAGGTCGAGATTTAGACGCTTTGTCGAATTGTCAAAGAAAGCAAAGCCAGAGAGAAATTTGTAACACTAACTCATGGACATTAATGTGATGTGTGTCGATAGAGAAGTATATACTAAAAA ]
[+] EMBL CB680765             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCACAACTGTTTTTAATAATAGTAACATAGTTGTAGGCTTGATGATGATGAGGTAACTTTGAGGTAACTTGGAGGGTTCGGCCTGCCATACTTGTTTTTGAATGGCGGCCATTTGTACTTGCTTAATACAAGGTTGTGGTTGTTGTAATGTGAGAAAGGTCGAGATTTAGACGCTTTGTCGAATTGTCAAAGAAAGCAAAGCCAGAGAGAAATTTGTAACACTAACTCATGGACATTAATGTGATGTGTGTCGATAGAGAAGTATATACTActttg]


>consensus_7278#0 GTGAGGAAAGGCAGCGAGCANCTCTGTCAAATCCGTGCAATCTCCGCCATCTCCCTCTCA CCATCTTCCTCCTCTCTCCCCTTATCCCAAATTTCCCCATCAATCGCCACCCGCGCCCAA TTCCCCCACTCGATTCGATTCGACTCGGTCGGGATCCCCCCATGGCGAGCGGCGCTCGTA GCGACGAAATCGAGCCAGCGAGTGGATGCGGCGCGCGCCATGGNGCCCTCGGTGGCGGTG GCGGTGGCGGTGGCGGAGGCGAGGGCGGATCGGCGTCGAGGGTCGGGGACTGGGGTGTTG ACTTGGGGGAAGGGTNGGACTGGAGGAGCATCCCGAAGCTCCTCTCCTCCGCCTGCCTCT TCATCTGCTCCGGAGGCTGTTTTGGATGCTGTGATAAGGCTGTGAGACATGTAGGACAGC TTTCAAAGAGTTTAATTACTCCGGACCAAAATTACACCATTGGGGACGAACTCTGGAGCA CAACCACCATCGAGGTCGAACAGTCATGGGCTCTTGATCAGCAAGGAGTGGGGAGCAGTC AGGGCCCTACTGAATTTGTCAATCATGGTCTTGTTCTTTGGAAGGAGATTAGGAAGGACT GGACTGCGAAAACAAGGCAAATACCTGAGACGAAACAGATTCGCGAACCAATATTGAGTT GGAATGCAGCCTATGAGAGTTTGCTTGGATCCAATAAGCCGTTTCATCAGCCCATCCCTC TACATGAGATGGTTGATTTTCTTGTGGACATCTGGGAACAAGAGGGGCTGTATGACTAGC ACAAATGTTTTTAATAATAGTAACATAGTTGTAGGCTTGATGATGATGAGGTAACTTTGA GGTAACTTGGAGGGTTCGGCCTGCCATACTTGTTTTTGAATGGCGGCCAGTTGTACTTGC TTAATACAAGGTTGTGGTTGTTGTAATGTGAGAAAGGTCGAGATTTAGACGCTTTGTCGA ATTGTCAAAGAAAGCAAAGCCAGAGAGAAATTTGTAACACTAACTCATGGACATTAATGT GATGTGTGTCGATAGAGAAGTATATACTAAAAAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)