These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 957 fasta sequence [ATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGAGAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCGGCCGTTGCCACCTGACCTACGTCTNTGACAAGAAAGACTAAGCTGCTTGATTGCANAGGATGACGAACTTGTTATGGGAGAAAAAATGGGATGGCACGGATACCTTNGGNGAGGCACAGACTGCCGCCCTTTCGTACTGGGCGTTGAGCATAGGCCTCTTTTCTTCATTGGGCTCTGACTGCAATCAATCCGATATGGATCTTGTGAGAAAAANAAANNANTATNTATANNNNNTTNAANNNNNCCTCAGGGGGGGCCGTACCATTCGCCTAANGATGTGATAAGCCGCTTCTGGCCCGTTACACGTGGACTGGAAACTGCGTACCAATAATCCTGCATATTCCCTTCCCATGGGTAAAAAAAGTCCACACCCCTCCCATCACACNTANGATAGTGGCTATTTGCTATCTCGAGAGTGGTTGATGGATGNGANCNNNCCGCCGCTTTTTTTTTATCTCTCTCTCTGCTCTATNATTAATAAGCTTTTGTACATTCACCACATAAGGTGAGCTCTGTCCCATCTTTCTCACTATTATGTG] [+] EMBL AW155592 [ATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGAGAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCGGCCGTTGCCACCTGACCTACGTCTNTGACAAGAAAGACTAAGCTGCTTGATTGCANAGGATGACGAACTTGTTATGGGAGAAAAAATGGGATGGCACGGATACCTTNGGNGAGGCACAGACTGCCGCCCTTTCGTACTGGGCGTTGAGCATAGGCCTCTTTTCTTCATTGGGCTCTGACTGCAATCAATCCGATATGGATCTTGTGAGAAAAANAAANNANTATNTATANNNNNTTNAANNNNNCCTCAGGGGGGGCCGTACCATTCGCCTAANGATGTGATAAGCCGCTTCTGGCCCGTTACACGTGGACTGGAAACTGCGTACCAATAATCCTGCATATTCCCTTCCCATGGGTAAAAAAAGTCCACACCCCTCCCATCACACNTANGATAGTGGCTATTTGCTATCTCGAGAGTGGTTGATGGATGNGANCNNNCCGCCGCTTTTTTTTTATCTCTCTCTCTGCTCTATNATTAATAAGCTTTTGTACATTCACCACATAAGGTGAGCTCTGTCCCATCTTTCTCACTATTATGTG] consensusID : consensus_7279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence [GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTTTCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCATGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGATAGAATGAGCGCCTACGGCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCTTGGGTGTCATGCAGGACCGCCAGTACTGCGGTACGTGGCAACTTGGACTACGTCTCTGGACAGAATGGACTAAGCTGCTTGATTGGCAAGGATGACGAACGTTGTTAATGGGAGAACAAATATGGGATGGGCTCCGGATAACCTTCCGGGCATGCACCAGATATGCGCGGCTATCCGTACCTGCCGATGGTGACATATGCCTCGTTTTCTACATCGTGCGTCTAGCTGGAAGTAAACGGTTTGGATCCTATTAGAAGAGATACTATAGACGGAAAACTCAAGTGGG] [+] EMBL AW155283 [GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTTTCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCATGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGATAGAATGAGCGCCTACGGCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCTTGGGTGTCATGCAGGACCGCCAGTACTGCGGTACGTGGCAACTTGGACTACGTCTCTGGACAGAATGGACTAAGCTGCTTGATTGGCAAGGATGACGAACGTTGTTAATGGGAGAACAAATATGGGATGGGCTCCGGATAACCTTCCGGGCATGCACCAGATATGCGCGGCTATCCGTACCTGCCGATGGTGACATATGCCTCGTTTTCTACATCGTGCGTCTAGCTGGAAGTAAACGGTTTGGATCCTATTAGAAGAGATACTATAGACGGAAAACTCAAGTGGG] consensusID : consensus_7279#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [ATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCNGCCGTGGCAACTGGACTACGTCTTTGACANAAAGGACTAAACTGCTGGATGCAAAGGATGACAAACTTGTTTATGGAGAAAAAATGGATGGGCACGGATACCTTCGNGCAGGCACAGACTGCCGCCTTTTGNTACTGGCGTTTGAGCATAGGCCTCTTTTCTTATTGGGCTCTGACTGCAATCATACNGATTGGATCTTGTGNGANNNNANCNNNNNANAAAAAAAAAAAAAAAAAAAAAAACTTAGGGGGGCCGGTCCCA] [+] EMBL AW155413 [ATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCNGCCGTGGCAACTGGACTACGTCTTTGACANAAAGGACTAAACTGCTGGATGCAAAGGATGACAAACTTGTTTATGGAGAAAAAATGGATGGGCACGGATACCTTCGNGCAGGCACAGACTGCCGCCTTTTGNTACTGGCGTTTGAGCATAGGCCTCTTTTCTTATTGGGCTCTGACTGCAATCATACNGATTGGATCTTGTGNGANNNNANCNNNNNANAAAAAAAAAAAAAAAAAAAAAAACTTAGGGGGGCCGGTCCCA] consensusID : consensus_7279#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTTTCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGTCTACACCACCCCCTGAAGATCAGCACAAGCCGCAGAAGACCAGTTGCTGTGCTCAGTACTACAAGTCGANGTGACGGAAGATTGACGCCTCGGCGGAGTGCCCAACAGAACTGCGTGCCGATCTCATGGTGCATGCAGACGGCATATTGGGCGTTGCCCTGACTACGTTTTGCAAAAAGCTAACTGTTGATTGCAGGATACCACTGTTATGGGAAAAATGGGGTGGCCGGACCTTGGGAGGCAAATGCGCCTTTTATAGTGTTACAAAGCCTTTTTTTTGGGGCTAAGGATCTACGATGGGGTTTGGAAAAAAAAATAAAAAAATTG] [+] EMBL AW155284 [GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTTTCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGTCTACACCACCCCCTGAAGATCAGCACAAGCCGCAGAAGACCAGTTGCTGTGCTCAGTACTACAAGTCGANGTGACGGAAGATTGACGCCTCGGCGGAGTGCCCAACAGAACTGCGTGCCGATCTCATGGTGCATGCAGACGGCATATTGGGCGTTGCCCTGACTACGTTTTGCAAAAAGCTAACTGTTGATTGCAGGATACCACTGTTATGGGAAAAATGGGGTGGCCGGACCTTGGGAGGCAAATGCGCCTTTTATAGTGTTACAAAGCCTTTTTTTTGGGGCTAAGGATCTACGATGGGGTTTGGAAAAAAAAATAAAAAAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7279#0 ------------------------------------------------------------ consensus_7279#2 ------------------------------------------------------------ consensus_7279#1 GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTT 60 consensus_7279#3 GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTT 60 consensus_7279#0 -----------------------------------------------ATCTTCGTCAAGA 13 consensus_7279#2 -----------------------------------------------ATCTTCGTCAAGA 13 consensus_7279#1 TCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGA 120 consensus_7279#3 TCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGA 120 ************* consensus_7279#0 CCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGAGAATGTCA 73 consensus_7279#2 CCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCA 73 consensus_7279#1 CCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCA 180 consensus_7279#3 CCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCA 180 **************************************************** ******* consensus_7279#0 AGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCG 133 consensus_7279#2 AGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCG 133 consensus_7279#1 AGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCG 240 consensus_7279#3 AGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCG 240 ************************************************************ consensus_7279#0 GCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCC 193 consensus_7279#2 GCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCC 193 consensus_7279#1 GCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCC 300 consensus_7279#3 GCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCC 300 ************************************************************ consensus_7279#0 TCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCA 253 consensus_7279#2 TCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCA 253 consensus_7279#1 TCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCA 360 consensus_7279#3 TCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAG-TCTACACCA 359 ************************************************** ********* consensus_7279#0 CCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACA 313 consensus_7279#2 CCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACA 313 consensus_7279#1 CCCCCAAGAAGATCAAGCACAAGCGCATGAAGACCAAGTTGGCTGTGCTCAAGTACTACA 420 consensus_7279#3 CCCCCT-GAAGATCA-GCACAAGCCGCAGAAGACCAG--TTGCTGTGCTCA-GTACTACA 414 ***** ******** ******** ******** * ********** ******** consensus_7279#0 AGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCG 373 consensus_7279#2 AGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCG 373 consensus_7279#1 AGGTCGACGGTGACGGATAGAATGAGCGCCTACGGCGCGAGTGCCCCAACGAGACCTGCG 480 consensus_7279#3 AG-TCGANG-TGACGGA-AGATTGA-CGCCT-CGGCG-GAGTGCCC-AAC-AGAACTGCG 466 ** **** * ******* *** *** ***** ** ** ******** *** *** ***** consensus_7279#0 GTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCGGC-CGTTGCCACCTG 432 consensus_7279#2 GTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCNGC-CGTGGCAACTGG 432 consensus_7279#1 GTGCCGGTATCTTCTTGGGTGTCATGCAGGACCGCCAGTACTGCGGTACGTGGCAACTTG 540 consensus_7279#3 -TGCCGATCTCATGGTG-----CATGCAG-ACGGC--ATATTGGG---CGTTGC--CCTG 512 ***** * ** * ** ****** ** ** ** ** *** ** * * consensus_7279#0 ACCTACGTCTNTG-ACAAGAAAGACTAAGCTGCTTGATTGCANAGGATGACGAAC-TTGT 490 consensus_7279#2 AC-TACGTCTTTG-ACANAAAGGACTAAACTGCTGGAT-GCAAAGGATGACAAAC-TTGT 488 consensus_7279#1 GACTACGTCTCTGGACAGAATGGACTAAGCTGCTTGATTGGCAAGGATGACGAACGTTGT 600 consensus_7279#3 AC-TACGTTTT---GCAAAAAG--CTAA-CTG-TTGATTGC--AGGATACCA----CTGT 558 ***** * ** * **** *** * *** * ***** * *** consensus_7279#0 TA-TGGGAGAAAAAAT--GGGATGG--CACGGATA--CCTTNGGNGAGGCAC-AGAC-TG 541 consensus_7279#2 TT-ATGGAGAAAAAAT--GGATGGG--CACGGATA--CCTTCGNGCAGGCAC-AGAC-TG 539 consensus_7279#1 TAATGGGAGAACAAATATGGGATGGGCTCCGGATAACCTTCCGGGCATGCACCAGATATG 660 consensus_7279#3 TA-TGGGA---AAAAT--GGGGTGG---CCGGA----CCTT--GGGAGGCAA-----ATG 598 * *** **** ** ** **** * * * *** ** consensus_7279#0 C-CGCCCTTTCGTACTGGGCGTTGA--GCATAGGCCTC-TTTTCTTCATTGGGC-TCTGA 596 consensus_7279#2 C-CGCCTTTTGNTACTGGCGTTTGA--GCATAGGCCTC-TTTTCTT-ATTGGGC-TCTGA 593 consensus_7279#1 CGCGGCTATCCGTACCTGCCGATGGTGACATATGCCTCGTTTTCTACATCGTGCGTCTAG 720 consensus_7279#3 C---GCCTTTTATA----GTGTT----ACA-AAGCCTTTTTTTTGGGGCTAAGGATCTA- 645 * * * ** * ** * **** **** * *** consensus_7279#0 CTGCAATCAATCCGATATGGATCTTGTGAGAAAAANA-AANNANTATNTATANNNNNTTN 655 consensus_7279#2 CTGCAATCATACNGAT-TGGATCTTGTGNGANNNNANCNNNNNANAAAAAAAAAAAAAAA 652 consensus_7279#1 CTGGAAGTAAACGGTT-TGGATCCTATTAGAAGA-----GATACTATAGACGGAAAACTC 774 consensus_7279#3 ------------CGAT-GGGGTTTGGAAAAAAAAATAAAAAAATTG-------------- 678 * * ** * * consensus_7279#0 AANNNNNCCTCAGGGGGGGCCGTACCATTCGCCTAANGATGTGATAAGCCGCTTCTGGCC 715 consensus_7279#2 AAAAAAAACTTAGGGGGGCCGGTCCCA--------------------------------- 679 consensus_7279#1 AAGTGGG----------------------------------------------------- 781 consensus_7279#3 ------------------------------------------------------------ consensus_7279#0 CGTTACACGTGGACTGGAAACTGCGTACCAATAATCCTGCATATTCCCTTCCCATGGGTA 775 consensus_7279#2 ------------------------------------------------------------ consensus_7279#1 ------------------------------------------------------------ consensus_7279#3 ------------------------------------------------------------ consensus_7279#0 AAAAAAGTCCACACCCCTCCCATCACACNTANGATAGTGGCTATTTGCTATCTCGAGAGT 835 consensus_7279#2 ------------------------------------------------------------ consensus_7279#1 ------------------------------------------------------------ consensus_7279#3 ------------------------------------------------------------ consensus_7279#0 GGTTGATGGATGNGANCNNNCCGCCGCTTTTTTTTTATCTCTCTCTCTGCTCTATNATTA 895 consensus_7279#2 ------------------------------------------------------------ consensus_7279#1 ------------------------------------------------------------ consensus_7279#3 ------------------------------------------------------------ consensus_7279#0 ATAAGCTTTTGTACATTCACCACATAAGGTGAGCTCTGTCCCATCTTTCTCACTATTATG 955 consensus_7279#2 ------------------------------------------------------------ consensus_7279#1 ------------------------------------------------------------ consensus_7279#3 ------------------------------------------------------------ consensus_7279#0 TG 957 consensus_7279#2 -- consensus_7279#1 -- consensus_7279#3 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||