These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7280#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 859 fasta sequence [ACAGCATTACTTTTGGACTTCTTCCTTTTGTATTC-AAATGTAATTGTCAACAAAGATTTTGAATCCATACAACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCAATTGATGAACTGCCATTGAAACACAAAAGGTACAATTCCGGGATAGTTAGTCCAAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTCAATGAACAGCACCAGTTCCTTTGCCGGAGTAGCAGTACTATAACTTGACAAGTCTTTGGAATCAATACCAACAACACGCTGAATAAGTATACATTAGTCCACAGGGATCCTGAGGGACGGGAACATGCAGTTTGATAAAAGCAACTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGCCCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTTCTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCGATGAGTTACCCAGTAGTGTCGCTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTTCTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACA-GTTTCTACTCCTCCAATCAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGTTCTCCGTGAGCTGTACCAATAAGCATCACACTCCTTTCTGCAATTGATCGACAAGCTTGCGCCTCTGCTTCAGTACCTATCTCATCTACAATAACCACC] [+] EMBL CB628276 [ACAGCATTACTTTTGGACTTCTTCCTTTTGTATTC AAATGTAATTGTCAACAAAGATTTTGAATCCATACAACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCAATTGATGAACTGCCATTGAAACACAAAAGGTACAATTCCGGGATAGTTAGTCCAAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTCAATGAACAGCACCAGTTCCTTTGCCGGAGTAGCAGTACTATAACTTGACAAGTCTTTGGAATCAATACCAACAACACGCTGAATAAGTATACATTAGTCCACAGGGATCCTGAGGGACGGGAACATGCAGTTTGATAAAAGCAACTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGCCCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTTCTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCGATGAGTTACCCAGTAGTGTCGCTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTTCTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACA GTTTCTACTCCTCCAATCAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGTTCTCCGTGAGCTGTACCAATAAGCATCACACTCCTTTCTGCAATTGATCGACAAGCTTGCGCCTCTGCTTCAGTACCTATCTCATCTACAATAACCACC] [+] EMBL CB626778 [ TTGGACTTCTTCCTTTTGTACTCTTAATGGAATTGTCAACAAAGATTTTGAATCCATACAACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCAATTGATGAACTGCCATTGAAACACAAAAGGTACAATTCCGGGATAGTTAGTCCAAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTCAATGAACAGCACCAGTTCCTTTGCCGGAGTAGCAGTACTATAACTTGACAAGTCTTTGGAATCAATACCAACAACACGCTGAATAAGTATACATTAGTCCACAGGGATCCTGAGGGACGGGAACATGCAGTTTGATAAAAGCAACTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGCCCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTTCTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCGATGAGTTACCCAGTAGTGTCGCTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTTCTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACA GTTTCTACTCCTCCAATCAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGTTCTCCGTGAG ] [-] EMBL CA305800 [ TACATTAGTCCACAGGGATCCTGAGGNACGGGAACATGCAGTTTGATAAAAGCATCTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGCCCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTTCTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCAATGAGTTACCCAGTAGTGTCGCTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTTCTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACANGTTTCTACTCCTCCAATCAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGT ] consensusID : consensus_7280#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [ATTGCAATAGGAATTGAAGATTAAGAAGCTGAGGTACAAACTAACACAGGACATTAAACAGCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTTGAATCCATACACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCATTGATGAACTGCCATTGAAACACAAAGGTACAATTCCGGGATAGTTAGTCCCCAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTGCCATATGAGAAATATAACCAATACACATCATTTTCAGTGCCAAACAGAAAATACATTTATAACTTCAAGTCTACACAATAAACCCTATCATCATTCAGAGAAAAACGATTTTGAAAAAAAAAA] [+] EMBL BI803722 [ATTGCAATAGGAATTGAAGATTAAGAAGCTGAGGTACAAACTAACACAGGACATTAAACAGCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTTGAATCCATACACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAATTGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCATTGATGAACTGCCATTGAAACACAAAGGTACAATTCCGGGATAGTTAGTCCCCAATGTTCACCAGAGGCACCTATGCAGGATGTTTCACTTCATTTTCTGCCATATGAGAAATATAACCAATACACATCATTTTCAGTGCCAAACAGAAAATACATTTATAACTTCAAGTCTACACAATAAACCCTATCATCATTCAGAGAAAAACGATTTTGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7280#0 ---------------------------------------------------------ACA 3 consensus_7280#1 ATTGCAATAGGAATTGAAGATTAAGAAGCTGAGGTACAAACTAACACAGGACATTAAACA 60 *** consensus_7280#0 GCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTTGAA 63 consensus_7280#1 GCATTACTTTTGGACTTCTTCCTTTTGTATTCAAATGTAATTGTCAACAAAGATTTTGAA 120 ************************************************************ consensus_7280#0 TCCATACAACAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAAT 123 consensus_7280#1 TCCATACA-CAGTTTTCCTGAGCTAATCAAAACCTCATACAGTAAAATCTTCTAGCTAAT 179 ******** *************************************************** consensus_7280#0 TGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCAATTGATG 183 consensus_7280#1 TGGGATAGATTTATCTGCTGTTTTCCTCTCATATTTCTGGAAACTAGGAATCA-TTGATG 238 ***************************************************** ****** consensus_7280#0 AACTGCCATTGAAACACAAAAGGTACAATTCCGGGATAGTTAGTCCA-AATGTTCACCAG 242 consensus_7280#1 AACTGCCATTGAAACACAAA-GGTACAATTCCGGGATAGTTAGTCCCCAATGTTCACCAG 297 ******************** ************************* ************ consensus_7280#0 AGGCACCTATGCAGGATGTTTCACTTCATTTTCT--CA-ATGAACAGCACCAGTTCCTTT 299 consensus_7280#1 AGGCACCTATGCAGGATGTTTCACTTCATTTTCTGCCATATGAGAAATAT-AACCAATAC 356 ********************************** ** **** * * * * consensus_7280#0 GCCGGAGTAGCAGTACTATA-ACTTGACAAGTCTTTGGAATCAATACCA-ACAACACGCT 357 consensus_7280#1 ACATCATTTTCAGTGCCAAACAGAAAATACATTTATAACTTCAAGTCTACACAATAAACC 416 * * * **** * * * * * * * * * **** * * **** * * consensus_7280#0 GAATAAGTATACATTAGTCCACAGGGATCCTGAGGGACGGGAACATGCAGTTTGATAAAA 417 consensus_7280#1 CTATCATCAT---TCAGAGAAAAACGATTTTGAAAAAAAAAA------------------ 455 ** * ** * ** * * *** *** * * consensus_7280#0 GCAACTGTAACAGGTAAGCTCATATTCAGAATTTCAGAGTCCATCTCCATCATACGTTGC 477 consensus_7280#1 ------------------------------------------------------------ consensus_7280#0 CCATCTTTCAATGACAACCTGAAACTTGTTATCCCTTTTCCTGACCTCAACAAGTGGTTT 537 consensus_7280#1 ------------------------------------------------------------ consensus_7280#0 CTTGCCATGAAGTAACATGTCCACACTCCTTTCAGTCCGATGAGTTACCCAGTAGTGTCG 597 consensus_7280#1 ------------------------------------------------------------ consensus_7280#0 CTCCCTCATCTCAATAAGGAAAGGGAATGTTGGAGGGGCCTTCCTCTCCAGAATACTTTT 657 consensus_7280#1 ------------------------------------------------------------ consensus_7280#0 CTGACTGCGGCGAGCACGGGCCTCTTCATCACCAAGAGTGACAGTTTCTACTCCTCCAAT 717 consensus_7280#1 ------------------------------------------------------------ consensus_7280#0 CAAATCAGATAAAGTTGGATTCTTTATAATGTTTGCGAGATGTTCTCCGTGAGCTGTACC 777 consensus_7280#1 ------------------------------------------------------------ consensus_7280#0 AATAAGCATCACACTCCTTTCTGCAATTGATCGACAAGCTTGCGCCTCTGCTTCAGTACC 837 consensus_7280#1 ------------------------------------------------------------ consensus_7280#0 TATCTCATCTACAATAACCACC 859 consensus_7280#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||