cluster # 7285

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Oryza sativa
cluster # 7285 cluster # 7285 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7285#0 length = 885 sequences # 3

consensus_7285#1 length = 581 sequences # 1

consensusID : consensus_7285#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 885
fasta sequence

                              [AGCCACCGAACAGAGCAAGGTCACTTCACGCCATTACCTTCTTCTCTCCAAGAACTCGAGTAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAATTCGACGCTCTGGTTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTCGGGTATGCTATGCCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACGGACCATCTCCGGTTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGATGATATCGCTGGTGTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTTCCTCGTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCTGCGGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAATGCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTCCTCCGGGGGATGGAGTACATCCGGTCCCAGACGTCACGAGGCTCAAGAACGAGGCGGTGGTTCTCGTTCGGAGGCGACCGGGCAGAGAGGTCGAGCTACGTTGATGATTATGTCGCCGGCGGTGGCGATCGGAGGAGCACGGCGAGGCACCGGCGACCCCGCGACGATTACTAACGGGCTGGACCGGCGCCATAGGGATTCAGTAGAGAGAGGTGCACAGGATTGGAAACTAGTTGATTAGGAGTGACAAAATTTAAAAGGCCCAAAGCAAAACTTCTCAAAAACATGATGTGTATATATATATAGACAGGTGATCACTGATCCATACTCTGGTATATATAGCTCCTCACAATT]

[+] EMBL AK108378             [AGCCACCGAACAGAGCAAGGTCACTTCACGCCATTACCTTCTTCTCTCCAAGAACTCGAGTAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAATTCGACGCTCTGGTTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTCGGGTATGCTATGCCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACGGACCATCTCCGGTTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGATGATATCGCTGGTGTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTTCCTCGTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCTGCGGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAATGCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTCCTCCGGGGGATGGAGTACATCCGGTCCCAGACGTCACGAGGCTCAAGAACGAGGCGGTGGTTCTCGTTCGGAGGCGACCGGGCAGAGAGGTCGAGCTACGTTGATGATTATGTCGCCGGCGGTGGCGATCGGAGGAGCACGGCGAGGCACCGGCGACCCCGCGACGATTACTAACGGGCTGGACCGGCGCCATAGGGATTCAGTAGAGAGAGGTGCACAGGATTGGAAACTAGTTGATTAGGAGTGACAAAATTTAAAAGGCCCAAAGCAAAACTTCTCAAAAACATGATGTGTATATATATATAGACAGGTGATCACTGATCCATACTCTGGTATATATAGCTCCTCACAATT]
[+] EMBL CF297757             [                                   ACCTTCTTCTCTCCAAGAACTCGAGTAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAATTCGACGCTCTGGTTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTCGGGTATGCTATGCCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACGGACCATCTCCGGCTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGATGATATCGCTGGTGTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTTCCTCGTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCTGCGGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAATGCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTCCTCCGGGGGATGG                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CF281441             [                                                                                                                                                                                                                                                                                                                                                                                             ACTGACATCGTGTACGACACCTTCCTGCGGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAATGCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTCCTCCGGGGGATGGAGTACATCCGGTCCCAGACGTCACGAGGCTCAAGAACGAGGCGGTGGTTCTCGTTCGGAGGCGACCGGGCAGAGAGGTCGAGCTACGTTGATGATTATGTCGCCGGCGGTGGCGATCGGAGGAGCACGGCGAGGCACCGGCGACCCCGCGACGATTACTAACGGGCTGGAACGGAGCCATAGGGATTCAGTAGAGAGAGGTGCACAGGATTGGAAAAAAAAAAATTAGGAGTGACAAAATTTAAAAGGCCCAAAGCAAAACTTCTCAAAAACATGATGTGTATATATATATAGACAGGTGATCACTGATCCATACTCTGGTATATATAGCTCCTCA     ]




>consensus_7285#0
AGCCACCGAACAGAGCAAGGTCACTTCACGCCATTACCTTCTTCTCTCCAAGAACTCGAG
TAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAATTCGACGCTCTGG
TTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTCGGGTATGCTATG
CCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACGGACCATCTCCGG
TTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGATGATATCGCTGGT
GTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTTCCTCGTCTACCTG
TGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCTGCGGCCGCTGGTG
ATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAATGCCGGCGAC
ATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTCCTCCGGGGG
ATGGAGTACATCCGGTCCCAGACGTCACGAGGCTCAAGAACGAGGCGGTGGTTCTCGTTC
GGAGGCGACCGGGCAGAGAGGTCGAGCTACGTTGATGATTATGTCGCCGGCGGTGGCGAT
CGGAGGAGCACGGCGAGGCACCGGCGACCCCGCGACGATTACTAACGGGCTGGACCGGCG
CCATAGGGATTCAGTAGAGAGAGGTGCACAGGATTGGAAACTAGTTGATTAGGAGTGACA
AAATTTAAAAGGCCCAAAGCAAAACTTCTCAAAAACATGATGTGTATATATATATAGACA
GGTGATCACTGATCCATACTCTGGTATATATAGCTCCTCACAATT

consensusID : consensus_7285#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAACGCCATTACCTTCTTCTCTCCAAGAACTCGAGTAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAATTCGACGCTCTGGTTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTCGGGTATGCTATGCCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACGGACCATCTCCGGTTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGATNGATATCGCTGGTGTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTTCCTCGTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCTGCGGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAATGCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTCCTCCGGGGGAATGGAGTACATCCGGTCCCAGACGTCACG]

[+] EMBL CF281440             [AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAACGCCATTACCTTCTTCTCTCCAAGAACTCGAGTAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAATTCGACGCTCTGGTTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTCGGGTATGCTATGCCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACGGACCATCTCCGGTTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGATNGATATCGCTGGTGTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTTCCTCGTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCTGCGGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAATGCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTCCTCCGGGGGAATGGAGTACATCCGGTCCCAGACGTCACG]




>consensus_7285#1
AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAACGCCATTACCTTCTTCTCTCCA
AGAACTCGAGTAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAATTC
GACGCTCTGGTTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTCGG
GTATGCTATGCCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACGGA
CCATCTCCGGTTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGATNG
ATATCGCTGGTGTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTTCC
TCGTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCTGC
GGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCA
ATGCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCT
TCCTCCGGGGGAATGGAGTACATCCGGTCCCAGACGTCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7285#0      ----------AGCC--ACCGAACAGAGCAAGGTCACTTCACGCCATTACCTTCTTCTCTC 48
consensus_7285#1      AATTCCCTTGGACCTGACTGGACTGA--AGGAGTAGAAAACGCCATTACCTTCTTCTCTC 58
                                  **  ** * ** **  * *   *    *********************

consensus_7285#0      CAAGAACTCGAGTAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAAT 108
consensus_7285#1      CAAGAACTCGAGTAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAAT 118
                      ************************************************************

consensus_7285#0      TCGACGCTCTGGTTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTC 168
consensus_7285#1      TCGACGCTCTGGTTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTC 178
                      ************************************************************

consensus_7285#0      GGGTATGCTATGCCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACG 228
consensus_7285#1      GGGTATGCTATGCCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACG 238
                      ************************************************************

consensus_7285#0      GACCATCTCCGGTTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGAT 288
consensus_7285#1      GACCATCTCCGGTTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGAT 298
                      ************************************************************

consensus_7285#0      G-ATATCGCTGGTGTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTT 347
consensus_7285#1      NGATATCGCTGGTGTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTT 358
                        **********************************************************

consensus_7285#0      CCTCGTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCT 407
consensus_7285#1      CCTCGTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCT 418
                      ************************************************************

consensus_7285#0      GCGGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGC 467
consensus_7285#1      GCGGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGC 478
                      ************************************************************

consensus_7285#0      CAATGCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCT 527
consensus_7285#1      CAATGCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCT 538
                      ************************************************************

consensus_7285#0      CTTCCTCCGGGGGA-TGGAGTACATCCGGTCCCAGACGTCACGAGGCTCAAGAACGAGGC 586
consensus_7285#1      CTTCCTCCGGGGGAATGGAGTACATCCGGTCCCAGACGTCACG----------------- 581
                      ************** ****************************                 

consensus_7285#0      GGTGGTTCTCGTTCGGAGGCGACCGGGCAGAGAGGTCGAGCTACGTTGATGATTATGTCG 646
consensus_7285#1      ------------------------------------------------------------
                                                                                  

consensus_7285#0      CCGGCGGTGGCGATCGGAGGAGCACGGCGAGGCACCGGCGACCCCGCGACGATTACTAAC 706
consensus_7285#1      ------------------------------------------------------------
                                                                                  

consensus_7285#0      GGGCTGGACCGGCGCCATAGGGATTCAGTAGAGAGAGGTGCACAGGATTGGAAACTAGTT 766
consensus_7285#1      ------------------------------------------------------------
                                                                                  

consensus_7285#0      GATTAGGAGTGACAAAATTTAAAAGGCCCAAAGCAAAACTTCTCAAAAACATGATGTGTA 826
consensus_7285#1      ------------------------------------------------------------
                                                                                  

consensus_7285#0      TATATATATAGACAGGTGATCACTGATCCATACTCTGGTATATATAGCTCCTCACAATT 885
consensus_7285#1      -----------------------------------------------------------