These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1283 fasta sequence [TCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATCCGGGAAGGAAGGATCGGAGTTAGTGAGTGAGTGAGGAATTGTAGCCATGGGACGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTGCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCAGCAGCCTCCAACCGCCACCCCATCTTCGCCGACGCCACCTTCCCCTCCGCCGCCGGCAGCCACACGGTGAGCAGCAACTCCGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCAGCACTATGACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGTCGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTGCTTCGACGTTCATCAGCAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTACGGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCTCCGCCGCTGTCATCGATCGAGAAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGACGGTTGCTGCTCCGTCCCAATGATGTTTTAATTAGCTCAAGTAATGAAAGAAAACACTGTCACATTCGATACGTATACTGTGCACATCAATAATTAATTTTACATTAATTAGCTAGATGCATGTTTAGGTTAAACTATTGTTGTTACTATACTTGAAGCTAGAAGATTTGTTTTATTTGTAGTTTTGGATGTGTGACCGGTTGTACGTGTGTCACTGGCATCAAACGTCAGCACAAGAATAAGAGATATCAACAGGAATTAAAAAAAAAAAAAAAAAAA] [+] EMBL CB658779 [TCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATCCGGGAAGGAAGGATCGGAGTTAGTGAGTGAGTGAGGAATTGTAGCCATGGGACGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTGCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCAGCAGCCTCCAACCGCCACCCCATCTTCGCCGACGCCACCTTCCCCTCCGCCGCCGGCAGCCACACGGTGAGCAGCAACTCCGATGTCAACCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCCTACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCGCCGTCGCCGCCGCCGCCGCCGCTGCAGCACTATGACGGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGTCCGCAACCCCTTGCTGTCGTCCTTCGACTG ] [+] EMBL OSMYB1308 [ GTGAGCAGCAACTCCGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCAGCACTATGACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGTCGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTGCTTCGACGTTCATCAGCAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTACGGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCTCCGCCGCTGTCATCGATCGAGAAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGACGGTTGCTGCTCCGTCCCAATGATGTTTTAATTAGCTCAAGTAATGAAAGAAAACACTGTCACATTCGATACGTATACTGTGCACATCAATAATTAATTTTACATTAATTAGCTAGATGCATGTTTAGGTTAAACTATTGTTGTTACTATACTTGAAGCTAGAAGATTTGTTTTATTTGTAGTTTTGGATGTGTGACCGGTTGTACGTGTGTCACTGGCATCAAACGTCAGCACAAGAATAAGAGATATCAACAGGAATTAAAAAAAAAAAAAAAAAAA] [+] EMBL AK061437 [ GTGAGCAGCAACTCCGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCCTTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTCGACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCAGCACTATGACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGTCGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTGCTTCGACGTTCATCAGCAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTACGGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCGCCGCCGCTGTCATCGATCGAGAAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGACGGTTGCTGCTCCGTCCCAATGATGTTTTAATTAGCTCAAGTAATGAAAGAAAACACTGTCACA ] consensusID : consensus_7286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence [GAAAGCATCCTACATACAGACAGATCGATCGATCGATCGATAACCAGATCAACTGACTTGCTAGAAAGTGAAAGTAAATCATCACATCGATCGATCAGAAAGTGGCTTACATCAGAGATAGCAAGTGAAAAGGAGCTCACTCACTCCCAAAGTCCCCAGTCTCCTAGCTATATATATCTCTACACTCAAGCACACTGTCGGAAGCTCAGGTAGCACAGAGAGAGACGACCGATCGATCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATCCGGGAAGGATCAGAGTTAATTAGTGAGTGAGGAATTGTAGCCATGGGCCGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACTGGTACGTCCTAATTCCCCAATTCTGTGTAGTTTCTTACTTTCTTTTGTAGATGAACTATAGCTAGCCAAGTAGCCATGGTGATCGATGATGAACTGAGAAGAAGCTGAAGCTGTGGGTGGATGGATGGATGCAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTTCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCATCCTCCAACCGCCACCCCATCTTCGCCGAC] [-] EMBL AK106719 [GAAAGCATCCTACATACAGACAGATCGATCGATCGATCGATAACCAGATCAACTGACTTGCTAGAAAGTGAAAGTAAATCATCACATCGATCGATCAGAAAGTGGCTTACATCAGAGATAGCAAGTGAAAAGGAGCTCACTCACTCCCAAAGTCCCCAGTCTCCTAGCTATATATATCTCTACACTCAAGCACACTGTCGGAAGCTCAGGTAGCACAGAGAGAGACGACCGATCGATCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATCCGGGAAGGATCAGAGTTAATTAGTGAGTGAGGAATTGTAGCCATGGGCCGGCCGCCGTGCTGCGACAAGGAGGGGATCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACTGGTACGTCCTAATTCCCCAATTCTGTGTAGTTTCTTACTTTCTTTTGTAGATGAACTATAGCTAGCCAAGTAGCCATGGTGATCGATGATGAACTGAGAAGAAGCTGAAGCTGTGGGTGGATGGATGGATGCAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAGCGCGGCAACTTCACGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTTCTCGGCAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAGAAGCTCGCCGCCGCCGCCAACTCCACTTCATCCTCCAACCGCCACCCCATCTTCGCCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7286#0 TCGATCAGCTAGCTGCAGCTTCCAGAAAGAGTAGTTAGCTCGATCGATCGATC-CGGGAA 59 consensus_7286#1 ----------GAAAGCATCCTACATACAGA-CAGATCGATCGATCGATCGATAACCAGAT 49 *** * * ** * *** ** * * ************* * ** consensus_7286#0 GGAAGGATCGGAGTTAGTGAGTGAGTGAGGAATTGTAGCCATGGGACGGCCGCCGTGCTG 119 consensus_7286#1 CAACTGACTTGCTAGAAAGTGAAAGTAAATCATCACATCGATCGATCAGAAAGTGGCTTA 109 * ** * * * * *** * ** * * ** * * * * * consensus_7286#0 CGACAAGGAGGGGA--TCAAGAAGGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTC 177 consensus_7286#1 CATCAGAGATAGCAAGTGAAAAGGAGCTCACTCACTCCCAAAGTCCCCAGTCTCCTAGCT 169 * ** ** * * * ** * * * ** ** *** * * ** **** * consensus_7286#0 TCCTACATCCAAGAACACGGCCCCGGCAACTGGAGATCGGTTCCCATCAACACAGGGCTG 237 consensus_7286#1 ATATATATCTCTACACTCAAGCACACTGTCGGAAGCTCAGGT------AGCACAGAG--- 220 ** *** ** * * * * * ** ** * * * ***** * consensus_7286#0 ATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCTGCGGCCGGGGATAAAG 297 consensus_7286#1 -------------AGAGACGACCGAT-CGATCGATCAGCTAGCTGCAGCTTCCAGAAAGA 266 **** * * * ** * ** * *** **** ** ** consensus_7286#0 CGCGGCAACTTCA-CGGCGCACGAGGAGGGGATCATCGTCCACCTCCAGTCGCTGCTCGG 356 consensus_7286#1 GTAGTTAGCTCGATCGATCGATCCGGGAAGGATCAGAGTTAATTAGTGAGTGAGGAATTG 326 * * ** * ** * ** ****** ** * * * * consensus_7286#0 CAACCGCTGGGCCGCCATCGCCTCCTACCTCCCCCAGCGCACCGACAACGACATCAAGAA 416 consensus_7286#1 TAGCCATGGGCCGGCCGCCGTGCT--------------GCGACAAGGAGGGGATCAAGAA 372 * ** ** * *** ** ** * * * * ******** consensus_7286#0 CTACTGGAACACCCAC-CTCAAGAAGAAGCTCGCCGCCGCCGCCAAC-TCCACTTCAGCA 474 consensus_7286#1 ----GGGGCCATGGACGCCCGAGGAGGACATCATCCTCGTCTCCTACATCCAAGAACACG 428 ** ** ** * * ** ** * ** * ** * ** ** **** * consensus_7286#0 GCCTC--CAACCGCCACCCCATCTTCGCCGACGCCACCTTCCCCTCCGCCGCCGGCAGCC 532 consensus_7286#1 GCCCCGGCAACTGGAGATCGGTTCCCATCAACACTGGTACGTCCTAATTCCCCA------ 482 *** * **** * * * * * ** * *** * ** consensus_7286#0 ACACGGTGAGCAGCAACTC-CGATGTCACCCAGATGGCAGCCATTGCTAGGCGCTCCCCC 591 consensus_7286#1 --ATTCTGTGTAGTTTCTTACTTTCTTTTGTAGATG--AACTATAGCTAGCCAAGTAGCC 538 * ** * ** ** * * * ***** * * ** ***** * ** consensus_7286#0 TTCGCCGACTGCCCATCCTCCTCATACGCCTCCAGCATGGACAACATCTCCAAGCTGCTC 651 consensus_7286#1 ATGGT-GATCGATGAT-----------GAACTGAGAAGAAGCTGAAGCTGTGGGTGGATG 586 * * ** * ** * ** * * * ** * * * consensus_7286#0 GACGGCTTCATGAAGACCAACTCCCCGTCGCCGCCGCCGCCACCGCTGCA-GCACTATG- 709 consensus_7286#1 GATGGATGCAGGGCTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACCT 646 ** ** * ** * * * * ** ** * * ** ** * * **** consensus_7286#0 ACAGCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGGCGGCAACCCCTTGCTGT 769 consensus_7286#1 GCGGCCGGGGATAAAGCG-CGGCAACTTCACGGCGCACGAGGAGGGGA-----TCATCGT 700 * ** * ** ** ** *** * * * * * * ** * * ** consensus_7286#0 CGTCCTTCGACTGCATGTCCGGCGCCGACCTGGACTGCTG----CTTCGACGTTCATCAG 825 consensus_7286#1 CCACCTCCAGTCGCTTCTCGGCAACCG--CTGGGCCGCCATCGCCTCCTACCTCCCCCAG 758 * *** * ** * ** * *** **** * ** ** * ** * * *** consensus_7286#0 CAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTATGGCGGCGGCTAC 885 consensus_7286#1 C-GCACCGACAACGACATCAAGAACTAC---TGGAACACC-CACCTCAAGAAGAAGCT-C 812 * ***** ** * ** * * **** ** * ** * * *** * consensus_7286#0 GGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCTCCGCCGCTGTCATCGATCGAG 945 consensus_7286#1 GCCGCCGCC-GCCAACTCCACTTCATCCTCCAA-CCGCCACCCCATCTTCGCCGAC---- 866 * ** ** ** * * ** * ** *** * ** * ** ** *** consensus_7286#0 AAGTGGCTGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGAC 1005 consensus_7286#1 ------------------------------------------------------------ consensus_7286#0 GGTTGCTGCTCCGTCCCAATGATGTTTTAATTAGCTCAAGTAATGAAAGAAAACACTGTC 1065 consensus_7286#1 ------------------------------------------------------------ consensus_7286#0 ACATTCGATACGTATACTGTGCACATCAATAATTAATTTTACATTAATTAGCTAGATGCA 1125 consensus_7286#1 ------------------------------------------------------------ consensus_7286#0 TGTTTAGGTTAAACTATTGTTGTTACTATACTTGAAGCTAGAAGATTTGTTTTATTTGTA 1185 consensus_7286#1 ------------------------------------------------------------ consensus_7286#0 GTTTTGGATGTGTGACCGGTTGTACGTGTGTCACTGGCATCAAACGTCAGCACAAGAATA 1245 consensus_7286#1 ------------------------------------------------------------ consensus_7286#0 AGAGATATCAACAGGAATTAAAAAAAAAAAAAAAAAAA 1283 consensus_7286#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||