These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1485 fasta sequence [CGCCGCCGCCGCCGCCGCCGCTGCCGCCATGGCCACCGCGTCCTCGCACCACCGCGCGCGCCGCCGCCGGAGTCGGCGGCGGCGGCAACAACCACACCATCGCGCAGCGCAAGATCCTGCTCGACCCGGACTTCACCCCGCGGCTCCCGCGCCAGAGCGCGCTCTCCCTCTCCCTCTCCCAGCGGAACGCGCTCCCGCCCCGCAACGCCGACCGCTTCCCCCGCCTCCCCGACGGCCACCTCAACATCGTCCTCTACGTCCACAACCGCCCCCGCTACCTCCGCCTCGTCGTCGACAGCCTCTCCCGCGCCCACGGCATCGGGGAGGCGCTGCTCATCGTCAGCCACGACGGCTACTTCCCGGAGATGGACAAGATCGTGCAGACCATCACCTTCTGCCAGGTCAAGCAGATCTTCGCGCCCTACTCGCCGCACCTCTTCCCGGAGGCCTTCCCCGGCGTCTCCTCCGGTGACTGCCAGGGCAAGGACAAGGCGGCCGAGAAGCACTGCCAGGGCGACCCGGACCAGTACGGCAACCATCGCTCCCCGAGAATCGTCTCGCTCAAGCACCACTGGTGGTGGATGATGAACACCGTGTGGGATGGGCTGGATGAGACCAGGGACTTCGATGGCCACATCCTCTTCATCGAGGAGGATCATTACATCTTCCCCAATGCGTACCGCAATGCGCAGCTGCTTGTCGACTTGAAGCCTAGCAAGTGTCCCCAGTGCTATGCTATNAACTTGGCGCCATCGGATGTCAAGGCGAAAGGGGAAGGTTGGGAGAGCTTGGTTGCCGAGAAGATGGGTAACATTGGCTATGCCTTTCACAGGACAGTTTGGAGGAAGATTCATGCCAAAGCTAAGCAGTTCTGCACATTCGACGAGTACAATTGGGATANTACGATGTGGGGCACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGACCTAGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCAATGTCTGTGTGGATAATGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTAACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCTTCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCATACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTTGGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCGATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAAAGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTCACAGATGTGGATAAAGTTTACTCTTTTAAGCCCAAAAAAAAAGGA] [+] EMBL CB667686 [CGCCGCCGCCGCCGCCGCCGCTGCCGCCATGGCCACCGCGTCCTCGCACCACCGCGCGCGCCGCCGCCGGAGTCGGCGGCGGCGGCAACAACCACACCATCGCGCAGCGCAAGATCCTGCTCGACCCGGACTTCACCCCGCGGCTCCCGCGCCAGAGCGCGCTCTCCCTCTCCCTCTCCCAGCGGAACGCGCTCCCGCCCCGCAACGCCGACCGCTTCCCCCGCCTCCCCGACGGCCACCTCAACATCGTCCTCTACGTCCACAACCGCCCCCGCTACCTCCGCCTCGTCGTCGACAGCCTCTCCCGCGCCCACGGCATCGGGGAGGCGCTGCTCATCGTCAGCCACGACGGCTACTTCCCGGAGATGGACAAGATCGTGCAGACCATCACCTTCTGCCAGGTCAAGCAGATCTTCGCGCCCTACTCGCCGCACCTCTTCCCGGAGGCCTTCCCCGGCGTCTCCTCCGGTGACTGCCAGGGCAAGGACAAGGCGGCCGAGAAGCACTGCCAGGGCGACCCGGACCAGTACGGCAACCATCGCTCCCCGAGAATCGTCTCGCTCAAGCACCACTGGTGGTGGATGATGAACACCGTGTGGGATGGGCTGGATGAGACCAGGGACTTCGATGGCCACATCCTCTTCATCGAGGAGGATCATTACATCTTCCCCAATGCGTACCGCAATGCGCAGCTGCTTGTCGACTTGAAGCCTAGCAAGTGTCCCCAGTGCTATGCTATNAACTTGGCGC ] [+] EMBL CB619354 [ CTCGACCCGGACTTCACCCCGCGGCTCCCGCGCCAGAGCGCGCTCTCCCTCTCCCTCTCCCAGCGGAACGCGCTCCCGCCCCGCAACGCCGACCGCTTCCCCCGCCTCCCCGACGGCCACCTCAACATCGTCCTCTACGTCCACAACCGCCCCCGCTACCTCCGCCTCGTCGTCGACAGCCTCTCCCGCGCCCACGGCATCGGGGAGGCGCTGCTCATCGTTAGCCACGACGGCTACTTCCCGGAGATGGACAAGATCGTGCAGGCCATCACCTTCTGCCAGGTCAAGCAGATCTTCGCGCCCTACTCGCCGCACCTCTTCCCGGAGGCCTTCCCCGGCGTCTCCTCCGGTGACTGCCAGGGCAAGGACAAGGCGGCCGAGAAGCACTGCCAGGGCGACCCGGACCAGTACGGCAACCATCGCTCCCCGAGAATCGTCTCGCTCAAGCACCACTGGTGGTGGATGATGAACACCGTGTGGGATGGGCTGGATGAGACCAGGGACTTCGATGGCCACATCCTCTTCATCGAGGAGGATCATTACATCTTCCCCAATGCGTACCGCAATGCGCAGCTGCTTGTCGACTTGAAGCCTAGCAAGTGTCCCCAGTGCTATGCTATAAACTTGGCGCCATCGGATGTCAAGGCGAAAGGGGAAGGTTGGGAGAGCTTGGTTGCCGAGAAGATGGGTAACATTGGCTATGCCTTTCACAGGACAGTTTGGAGGAAGATTCATGCCAAAGCTAAGCAGTTCTGCACATTCGACGAGTACAATTGGGATANTACGATGTGGGGCACCGTGTATCCGTC ] [-] EMBL CB619355 [ GTTGGGAGAGCTTGGTTGCCGAGAAGATGGGTAACATTGGCTATGCCTTCAACAGGACAGTTTGGAGGAAGATTCATGCCAAAGCTAAGCAGTTCTGCACATTCGACGAGTACAATTGGGATATAACGATGTGGGCAACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGACCTAGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCAATGTCTGTGTGGATAATGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTAACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCTTCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCATACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTTGGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCGATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAAAGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTCACAGATGTGGATAAAGTTTACTCTTTTAAGCCCAAAAAAAAAGGA] consensusID : consensus_7288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [AGAGGACAAGACAAGGGGGATATAACGATGTGGGCAACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGACCTGGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCAAAGTCTGTGTGGATAAAGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTAACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCTTCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCATACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTTGGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCGATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAAAGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTCACAGATGTGGATAAAGTTTACTCTTTTAAGCACATGAGTTAGCATTTATTTGCTACTTGAGATCTTGCCATGTTTCCTTCTGTCTAAAAAAAAAAAAA] [-] EMBL CA759682 [AGAGGACAAGACAAGGGGGATATAACGATGTGGGCAACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGACCTGGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCAAAGTCTGTGTGGATAAAGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTAACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCTTCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCATACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTTGGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCGATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAAAGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTCACAGATGTGGATAAAGTTTACTCTTTTAAGCACATGAGTTAGCATTTATTTGCTACTTGAGATCTTGCCATGTTTCCTTCTGTCTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7288#0 CGCCGCCGCCGCCGCCGCCGCTGCCGCCATGGCCACCGCGTCCTCGCACCACCGCGCGCG 60 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 CCGCCGCCGGAGTCGGCGGCGGCGGCAACAACCACACCATCGCGCAGCGCAAGATCCTGC 120 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 TCGACCCGGACTTCACCCCGCGGCTCCCGCGCCAGAGCGCGCTCTCCCTCTCCCTCTCCC 180 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 AGCGGAACGCGCTCCCGCCCCGCAACGCCGACCGCTTCCCCCGCCTCCCCGACGGCCACC 240 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 TCAACATCGTCCTCTACGTCCACAACCGCCCCCGCTACCTCCGCCTCGTCGTCGACAGCC 300 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 TCTCCCGCGCCCACGGCATCGGGGAGGCGCTGCTCATCGTCAGCCACGACGGCTACTTCC 360 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 CGGAGATGGACAAGATCGTGCAGACCATCACCTTCTGCCAGGTCAAGCAGATCTTCGCGC 420 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 CCTACTCGCCGCACCTCTTCCCGGAGGCCTTCCCCGGCGTCTCCTCCGGTGACTGCCAGG 480 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 GCAAGGACAAGGCGGCCGAGAAGCACTGCCAGGGCGACCCGGACCAGTACGGCAACCATC 540 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 GCTCCCCGAGAATCGTCTCGCTCAAGCACCACTGGTGGTGGATGATGAACACCGTGTGGG 600 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 ATGGGCTGGATGAGACCAGGGACTTCGATGGCCACATCCTCTTCATCGAGGAGGATCATT 660 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 ACATCTTCCCCAATGCGTACCGCAATGCGCAGCTGCTTGTCGACTTGAAGCCTAGCAAGT 720 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 GTCCCCAGTGCTATGCTATNAACTTGGCGCCATCGGATGTCAAGGCGAAAGGGGAAGGTT 780 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 GGGAGAGCTTGGTTGCCGAGAAGATGGGTAACATTGGCTATGCCTTTCACAGGACAGTTT 840 consensus_7288#1 ------------------------------------------------------------ consensus_7288#0 GGAGGAAGATTCATGCCAAAGCTAAGCAGTTCTGCACATTCGACGAGTACAATTGGGATA 900 consensus_7288#1 -------------------------------------AGAGGACAAG-ACAAGGGGGATA 22 * *** ** **** ****** consensus_7288#0 NTACGATGTGGGGCACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGAC 960 consensus_7288#1 TAACGATGTGGGCAACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGAC 82 ********** ********************************************** consensus_7288#0 CTAGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCA 1020 consensus_7288#1 CTGGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCA 142 ** ********************************************************* consensus_7288#0 ATGTCTGTGTGGATAATGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTA 1080 consensus_7288#1 AAGTCTGTGTGGATAAAGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTA 202 * ************** ******************************************* consensus_7288#0 ACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCT 1140 consensus_7288#1 ACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCT 262 ************************************************************ consensus_7288#0 TCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCAT 1200 consensus_7288#1 TCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCAT 322 ************************************************************ consensus_7288#0 ACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTT 1260 consensus_7288#1 ACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTT 382 ************************************************************ consensus_7288#0 GGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCG 1320 consensus_7288#1 GGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCG 442 ************************************************************ consensus_7288#0 ATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAA 1380 consensus_7288#1 ATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAA 502 ************************************************************ consensus_7288#0 AGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTC 1440 consensus_7288#1 AGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTC 562 ************************************************************ consensus_7288#0 ACAGATGTGGATAAAGTTTACTCTTTTAAGCCCAAAAAAAAAGGA--------------- 1485 consensus_7288#1 ACAGATGTGGATAAAGTTTACTCTTTTAAGCACATGAGTTAGCATTTATTTGCTACTTGA 622 ******************************* ** * * consensus_7288#0 -------------------------------------- consensus_7288#1 GATCTTGCCATGTTTCCTTCTGTCTAAAAAAAAAAAAA 660 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||