These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1072 fasta sequence [CTCGCCACGTCACCATCGCTACCCCTCTCCCTCCCGAATCTCCGGCCGCC-----CCTCGCCTCGCCTCGCCTCGCCGCCGCATCCGCTGCCCGCCGGCCACCGTAGCCGCATCGACGCCGCGGCCGCGTCGCCGCCCCTCTCCCTACCTTCCTCCGCCCCTCGCGACATCGCCCCTCCTCCCGCTAGGTCCGGCCGCTTCACCGGCTGGCCGTCCATGGCTGCAGCGATGGGCGCGGCGGTGGTCCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCTTCGCGCGCCCAAATTCGTAGAAGTTGAATTTGAGGATGGCAGCTCATTCCATCTGCCTGCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAGA] [+] EMBL AK061372 [CTCGCCACGTCACCATCGCTACCCCTCTCCCTCCCGAATCTCCGGCCGCC CCTCGCCTCGCCTCGCCTCGCCGCCGCATCCGCTGCCCGCCGGCCACCGTAGCCGCATCGACGCCGCGGCCGCGTCGCCGCCCCTCTCCCTACCTTCCTCCGCCCCTCGCGACATCGCCCCTCCTCCCGCTAGGTCCGGCCGCTTCACCGGCTGGCCGTCCATGGCTGCAGCGATGGGCGCGGCGGTGGTCCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCTTCGCGCGCCCAAATTCGTAGAAGTTGAATTTGAGGATGGCAGCTCATTCCATCTGCCTGCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCT ] [+] EMBL CB662024 [ CCCTCTCCCTCCCGAATCTCCGGCCGCCCCTCGCCTCGCCTCGCCTCGCCTCGCCGCCGCATCCGCTGCCCGCCGGCCACCGTAGCCGCATCGACGCCGCGGCCGCGTCGCCGCCCCTCTCCCTACCTTCCTCCGCCCCTCGCGACATCGCCCCTCGTCCCGCTAGGTCCGGCCGCTTCACCGGCTGGCCGCCCATGGCTGCAGCGAGGGGCGCGGCGGTGGTCCGGCGGCTCCACGCGGCGCATGCGCAGGGGCGGCCCCCGCGGCTGACGAAGCGCGCGCTTCACGCGCCCAGATTCGTATAAGGTGAATTTGAGGATGGCAGCTCATTCCATCTGCCTGCTGAGTTTCTTAGAGTGTACAGCCCGACGGCTGATGGCAAAATCAGATCAGca ] [-] EMBL CB662025 [ GGTGTTCCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCTTCGCGCGCCCAAATTCGTAGAAGTTGAATTTGAGGATGGCAGCTCATTCCATCTGCCTGCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAGA] consensusID : consensus_7292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence [GCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGTGAGGGTCATGTTTCTTGCATTATCAAATTCGTGGAGGTTTTCCCCCACATAATGTCAATTGATCCTGTTTCGTAAAAAAAAATAGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAAAAAAAAGA] [-] EMBL CB656210 [GCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGTGAGGGTCATGTTTCTTGCATTATCAAATTCGTGGAGGTTTTCCCCCACATAATGTCAATTGATCCTGTTTCGTAAAAAAAAATAGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7292#0 CTCGCCACGTCACCATCGCTACCCCTCTCCCTCCCGAATCTCCGGCCGCCCCTCGCCTCG 60 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 CCTCGCCTCGCCGCCGCATCCGCTGCCCGCCGGCCACCGTAGCCGCATCGACGCCGCGGC 120 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 CGCGTCGCCGCCCCTCTCCCTACCTTCCTCCGCCCCTCGCGACATCGCCCCTCCTCCCGC 180 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TAGGTCCGGCCGCTTCACCGGCTGGCCGTCCATGGCTGCAGCGATGGGCGCGGCGGTGGT 240 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 CCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCA-GCCCCCGCGGCTGACGAAGCTCGCGC 299 consensus_7292#1 -------------GCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAG 47 ** * * * * * *** ** ***** * consensus_7292#0 TTCGCGCGCCCAAATTCGTAGAAGTTGAATTTGAGGATGGCAGCTCATTCCATC--TGCC 357 consensus_7292#1 ATCAGTAGCTGG----TGAGAAGGTTATATTTG--GGCGGCGACATGTTGGAATAATGTC 101 ** ** * * *** ***** * *** * ** * ** * consensus_7292#0 TGCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGG 417 consensus_7292#1 AGCTGAATCAGTAGGAAATTACGG---AGTA--CGGTG--AGGGTCATGTTTCTTGC--- 151 ***** * * ** *** * ** * * * * *** * * ** consensus_7292#0 TGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAA 477 consensus_7292#1 ----ATTATCAAATTCGTGGAGGTTTTCCCCCACATAATGTCAATTGATCCTGTTTCGTA 207 * * * *** * * * ********* *** * ** * consensus_7292#0 TTACGGAGTACGGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTA 537 consensus_7292#1 --AAAAAAAATAGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTA 265 * * * ************************************************ consensus_7292#0 CTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAA 597 consensus_7292#1 CTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAA 325 ************************************************************ consensus_7292#0 AAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTAT 657 consensus_7292#1 AAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTAT 385 ************************************************************ consensus_7292#0 GTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGG 717 consensus_7292#1 GTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGG 445 ************************************************************ consensus_7292#0 ATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATA 777 consensus_7292#1 ATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATA 505 ************************************************************ consensus_7292#0 CAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTG 837 consensus_7292#1 CAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTG 565 ************************************************************ consensus_7292#0 AAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGA 897 consensus_7292#1 AAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGA 625 ************************************************************ consensus_7292#0 CATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAA 957 consensus_7292#1 CATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAA 685 ************************************************************ consensus_7292#0 TTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGA 1017 consensus_7292#1 TTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGA 745 ************************************************************ consensus_7292#0 ACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAGA----- 1072 consensus_7292#1 ACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAAAAAAAA 805 ***************************************************** * consensus_7292#0 -- consensus_7292#1 GA 807 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||