cluster # 7292

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Oryza sativa
cluster # 7292 cluster # 7292 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7292#0 length = 1072 sequences # 3

consensus_7292#1 length = 807 sequences # 1

consensusID : consensus_7292#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1072
fasta sequence

                              [CTCGCCACGTCACCATCGCTACCCCTCTCCCTCCCGAATCTCCGGCCGCC-----CCTCGCCTCGCCTCGCCTCGCCGCCGCATCCGCTGCCCGCCGGCCACCGTAGCCGCATCGACGCCGCGGCCGCGTCGCCGCCCCTCTCCCTACCTTCCTCCGCCCCTCGCGACATCGCCCCTCCTCCCGCTAGGTCCGGCCGCTTCACCGGCTGGCCGTCCATGGCTGCAGCGATGGGCGCGGCGGTGGTCCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCTTCGCGCGCCCAAATTCGTAGAAGTTGAATTTGAGGATGGCAGCTCATTCCATCTGCCTGCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAGA]

[+] EMBL AK061372             [CTCGCCACGTCACCATCGCTACCCCTCTCCCTCCCGAATCTCCGGCCGCC     CCTCGCCTCGCCTCGCCTCGCCGCCGCATCCGCTGCCCGCCGGCCACCGTAGCCGCATCGACGCCGCGGCCGCGTCGCCGCCCCTCTCCCTACCTTCCTCCGCCCCTCGCGACATCGCCCCTCCTCCCGCTAGGTCCGGCCGCTTCACCGGCTGGCCGTCCATGGCTGCAGCGATGGGCGCGGCGGTGGTCCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCTTCGCGCGCCCAAATTCGTAGAAGTTGAATTTGAGGATGGCAGCTCATTCCATCTGCCTGCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCT                ]
[+] EMBL CB662024             [                      CCCTCTCCCTCCCGAATCTCCGGCCGCCCCTCGCCTCGCCTCGCCTCGCCTCGCCGCCGCATCCGCTGCCCGCCGGCCACCGTAGCCGCATCGACGCCGCGGCCGCGTCGCCGCCCCTCTCCCTACCTTCCTCCGCCCCTCGCGACATCGCCCCTCGTCCCGCTAGGTCCGGCCGCTTCACCGGCTGGCCGCCCATGGCTGCAGCGAGGGGCGCGGCGGTGGTCCGGCGGCTCCACGCGGCGCATGCGCAGGGGCGGCCCCCGCGGCTGACGAAGCGCGCGCTTCACGCGCCCAGATTCGTATAAGGTGAATTTGAGGATGGCAGCTCATTCCATCTGCCTGCTGAGTTTCTTAGAGTGTACAGCCCGACGGCTGATGGCAAAATCAGATCAGca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB662025             [                                                                                                                                                                                                                                               GGTGTTCCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCTTCGCGCGCCCAAATTCGTAGAAGTTGAATTTGAGGATGGCAGCTCATTCCATCTGCCTGCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAGA]




>consensus_7292#0
CTCGCCACGTCACCATCGCTACCCCTCTCCCTCCCGAATCTCCGGCCGCCCCTCGCCTCG
CCTCGCCTCGCCGCCGCATCCGCTGCCCGCCGGCCACCGTAGCCGCATCGACGCCGCGGC
CGCGTCGCCGCCCCTCTCCCTACCTTCCTCCGCCCCTCGCGACATCGCCCCTCCTCCCGC
TAGGTCCGGCCGCTTCACCGGCTGGCCGTCCATGGCTGCAGCGATGGGCGCGGCGGTGGT
CCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCAGCCCCCGCGGCTGACGAAGCTCGCGCT
TCGCGCGCCCAAATTCGTAGAAGTTGAATTTGAGGATGGCAGCTCATTCCATCTGCCTGC
TGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGA
GAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTA
CGGAGTACGGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTT
GCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAA
GCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTG
AGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATT
GAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAG
TCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAA
TGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACAT
TTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTT
GTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACT
TTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAGA

consensusID : consensus_7292#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 807
fasta sequence

                              [GCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGTGAGGGTCATGTTTCTTGCATTATCAAATTCGTGGAGGTTTTCCCCCACATAATGTCAATTGATCCTGTTTCGTAAAAAAAAATAGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAAAAAAAAGA]

[-] EMBL CB656210             [GCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGTGAGGGTCATGTTTCTTGCATTATCAAATTCGTGGAGGTTTTCCCCCACATAATGTCAATTGATCCTGTTTCGTAAAAAAAAATAGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAAAAAAAAGA]




>consensus_7292#1
GCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGT
GAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAAT
TACGGAGTACGGTGAGGGTCATGTTTCTTGCATTATCAAATTCGTGGAGGTTTTCCCCCA
CATAATGTCAATTGATCCTGTTTCGTAAAAAAAAATAGATATTGTTTGATGATCTGCACA
AGACAGGGATCTTTACATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGA
TGCGAAGCTATATCACAACTTTGAAAAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGA
AATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTCATAG
AAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGA
AGCTTGACAAGTAAAGTACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAAT
CTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCCTTTGTCGAAATTTTGGCATATCTT
CAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTT
TTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATA
GTTTATGTGTGTGTTTTGACGATGAACTTTTCTACCGATATTTGGTTATGTAATAGCCAA
ATCTTGTTGGTGTTACTAAAAAAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7292#0      CTCGCCACGTCACCATCGCTACCCCTCTCCCTCCCGAATCTCCGGCCGCCCCTCGCCTCG 60
consensus_7292#1      ------------------------------------------------------------
                                                                                  

consensus_7292#0      CCTCGCCTCGCCGCCGCATCCGCTGCCCGCCGGCCACCGTAGCCGCATCGACGCCGCGGC 120
consensus_7292#1      ------------------------------------------------------------
                                                                                  

consensus_7292#0      CGCGTCGCCGCCCCTCTCCCTACCTTCCTCCGCCCCTCGCGACATCGCCCCTCCTCCCGC 180
consensus_7292#1      ------------------------------------------------------------
                                                                                  

consensus_7292#0      TAGGTCCGGCCGCTTCACCGGCTGGCCGTCCATGGCTGCAGCGATGGGCGCGGCGGTGGT 240
consensus_7292#1      ------------------------------------------------------------
                                                                                  

consensus_7292#0      CCGGCGGCTCCACGCGGCGCAGGCGCAGGCGCA-GCCCCCGCGGCTGACGAAGCTCGCGC 299
consensus_7292#1      -------------GCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAG 47
                                   ** * *         * * *   *** ** *****         *  

consensus_7292#0      TTCGCGCGCCCAAATTCGTAGAAGTTGAATTTGAGGATGGCAGCTCATTCCATC--TGCC 357
consensus_7292#1      ATCAGTAGCTGG----TGAGAAGGTTATATTTG--GGCGGCGACATGTTGGAATAATGTC 101
                       **    **        *   * ***  *****  *  ***  *   **  *    ** *

consensus_7292#0      TGCTGAGTTTCTTAGAGTGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGG 417
consensus_7292#1      AGCTGAATCAGTAGGAAATTACGG---AGTA--CGGTG--AGGGTCATGTTTCTTGC--- 151
                       ***** *   *  **   *** *   ** *   * *   *   ***  *   * **   

consensus_7292#0      TGAGAAGGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAA 477
consensus_7292#1      ----ATTATCAAATTCGTGGAGGTTTTCCCCCACATAATGTCAATTGATCCTGTTTCGTA 207
                          *   * * *** * *  *            *********  ***  * **     *

consensus_7292#0      TTACGGAGTACGGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTA 537
consensus_7292#1      --AAAAAAAATAGATATTGTTTGATGATCTGCACAAGACAGGGATCTTTACATGGGATTA 265
                        *   *  *  ************************************************

consensus_7292#0      CTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAA 597
consensus_7292#1      CTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAA 325
                      ************************************************************

consensus_7292#0      AAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTAT 657
consensus_7292#1      AAAGCACGGCCTTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTAT 385
                      ************************************************************

consensus_7292#0      GTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGG 717
consensus_7292#1      GTGAGTTCATTTTGACGTACCATGAAACCTCATAGAAGAAATGCTGCTTGGAGCCCTGGG 445
                      ************************************************************

consensus_7292#0      ATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATA 777
consensus_7292#1      ATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAGTACTAAATA 505
                      ************************************************************

consensus_7292#0      CAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTG 837
consensus_7292#1      CAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTG 565
                      ************************************************************

consensus_7292#0      AAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGA 897
consensus_7292#1      AAATGATGGCCTTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGA 625
                      ************************************************************

consensus_7292#0      CATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAA 957
consensus_7292#1      CATTTGTTGGTTTGAGGCTTAAGGGTGTGTTTGTTTTGTTCCGTAACAAAACTAAACAAA 685
                      ************************************************************

consensus_7292#0      TTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGA 1017
consensus_7292#1      TTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTTTGACGATGA 745
                      ************************************************************

consensus_7292#0      ACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAGA----- 1072
consensus_7292#1      ACTTTTCTACCGATATTTGGTTATGTAATAGCCAAATCTTGTTGGTGTTACTAAAAAAAA 805
                      ***************************************************** *     

consensus_7292#0      --
consensus_7292#1      GA 807