These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1038 fasta sequence [TCAGCGACGTACAGTACAGATCGTTCGCAATAAAGTTAGACTTCTCGTCTCTCTTTGTGCTTGTGCTTAGTTGTCCGTGCTAGAAGACGGCAATGGCGTCGACGGATCCCATGACCCGCCGCTTCGCCGTCGCGTGCGGCGTGCTCAGCCAGTACGTCAAGGCCAACTCCTCGCAGCCGTCGACGGCGGCGCCGGT-GGCTCAAGGTGTGAGTGGCCTCATGGCCGCCGCCGCCGCCGCCGCCGCGGCGCCTGTGGTCCAGGAACCCGGATGCGAGGTGGACGGCGGGGGGCAGCAGTTCACGATCTTCTACGCCGGGAAGGTGGTGGTGATCGACCGCTGCACGCCGGCCATGGCGGCCGAGCTGATGCGGTTCGCGTCGGCGGCGCAGGGCGGCGGCGGCGCGCCAGAGGCGCCGCCCGCGCTGGTGGACATGCCGATCGCGAGGAAGGCGTCGCTGAAGCGGTTCCTGGCGAAGCGCAAGGCCACCCCCGCCTCCGCGCGGTCGTCGTACGTCGTCCGTGCTGCGGCGGCGGAGGAGGAGCAGCCGCCGGCGAAGAAAGCGAAGGCGGCCGTGGAGAGGCGCGAGGATTGGCTCGCGCTGGGAAGCCTTGGACACATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCGATTTGAGAATTGAGAGCTCGATCGATTGATCGCCATGTGGTCACCCGGTAGCCGATGCTGCAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATTTCGCCGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACCCTAGTTATCGCGGCGTATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTAGATCAGGACTAGAGAGGGGTGTATGGATCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAATGATATAAAATTCCTTCGACTGTTCTGAAAAAAAAAAA] [+] EMBL AK070649 [TCAGCGACGTACAGTACAGATCGTTCGCAATAAAGTTAGACTTCTCGTCTCTCTTTGTGCTTGTGCTTAGTTGTCCGTGCTAGAAGACGGCAATGGCGTCGACGGATCCCATGACCCGCCGCTTCGCCGTCGCGTGCGGCGTGCTCAGCCAGTACGTCAAGGCCAACTCCTCGCAGCCGTCGACGGCGGCGCCGGT GGCTCAAGGTGTGAGTGGCCTCATGGCCGCCGCCGCCGCCGCCGCCGCGGCGCCTGTGGTCCAGGAACCCGGATGCGAGGTGGACGGCGGGGGGCAGCAGTTCACGATCTTCTACGCCGGGAAGGTGGTGGTGATCGACCGCTGCACGCCGGCCATGGCGGCCGAGCTGATGCGGTTCGCGTCGGCGGCGCAGGGCGGCGGCGGCGCGCCAGAGGCGCCGCCCGCGCTGGTGGACATGCCGATCGCGAGGAAGGCGTCGCTGAAGCGGTTCCTGGCGAAGCGCAAGGCCACCCCCGCCTCCGCGCGGTCGTCGTACGTCGTCCGTGCTGCGGCGGCGGAGGAGGAGCAGCCGCCGGCGAAGAAAGCGAAGGCGGCCGTGGAGAGGCGCGAGGATTGGCTCGCGCTGGGAAGCCTTGGACACATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCGATTTGAGAATTGAGAGCTCGATCGATTGATCGCCATGTGGTCACCCGGTAGCCGATGCTGCAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATTTCGCCGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACCCTAGTTATCGCGGCGTATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTAGATCAGGACTAGAGAGGGGTGTATGGATCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAATGATATAAAATTCCTTC ] [+] EMBL AU093851 [ CGTTCGCAATAAAGTNAGACTTCTCGTCTCTNTTTGTGCTTGTCCTTAGTTGTCCGTGCTAGAAGACGGCAATGGCGTCGACGGATCCCATGACCCGCCGCTTCGCCGTCGCGTGCGGCGTGCTCAGCCAGTACGTCAAGGCCAACTCCTCGCAGCCGTCNACGGCGGCGCCGGTGGGCTCAAGGTGTNANTGGCCTCATGGCCGCCGCCGCCGCCGCCGCCGCGGC NCTGTGGTCCAGGAACCCGGATGCAAGGTGGACGGCGGGGGGCAGCAGTTCACGATCTTCTACGCCGGGAAGGTGGTGG ] [+] EMBL AU093852 [ GAGCAGCNGCCGGCGAAGAAAGCGAAGGCGNCCGTGGAGAGGCGCGAGGATTGGCTCGCGCTGGGAAGCCTTGGACACATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCGATTTGAGAATTGAGAGCTCGATCGATTGATCGCCATGTGGTCACCCGGTAGCCGATGCTGCAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATTTCGCCGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACCCTAGTTATCGCGGCGTATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTAGATCAGGACTAGAGAGGGGTGTATGGATCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAATGATATAAAATTCCTTCGACTGTTCTGAAAAAAAAAAA] consensusID : consensus_7296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 110 fasta sequence [TCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB096880 [TCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7296#0 TCAGCGACGTACAGTACAGATCGTTCGCAATAAAGTTAGACTTCTCGTCTCTCTTTGTGC 60 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 TTGTGCTTAGTTGTCCGTGCTAGAAGACGGCAATGGCGTCGACGGATCCCATGACCCGCC 120 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 GCTTCGCCGTCGCGTGCGGCGTGCTCAGCCAGTACGTCAAGGCCAACTCCTCGCAGCCGT 180 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 CGACGGCGGCGCCGGTGGCTCAAGGTGTGAGTGGCCTCATGGCCGCCGCCGCCGCCGCCG 240 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 CCGCGGCGCCTGTGGTCCAGGAACCCGGATGCGAGGTGGACGGCGGGGGGCAGCAGTTCA 300 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 CGATCTTCTACGCCGGGAAGGTGGTGGTGATCGACCGCTGCACGCCGGCCATGGCGGCCG 360 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 AGCTGATGCGGTTCGCGTCGGCGGCGCAGGGCGGCGGCGGCGCGCCAGAGGCGCCGCCCG 420 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 CGCTGGTGGACATGCCGATCGCGAGGAAGGCGTCGCTGAAGCGGTTCCTGGCGAAGCGCA 480 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 AGGCCACCCCCGCCTCCGCGCGGTCGTCGTACGTCGTCCGTGCTGCGGCGGCGGAGGAGG 540 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 AGCAGCCGCCGGCGAAGAAAGCGAAGGCGGCCGTGGAGAGGCGCGAGGATTGGCTCGCGC 600 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 TGGGAAGCCTTGGACACATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCG 660 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 ATTTGAGAATTGAGAGCTCGATCGATTGATCGCCATGTGGTCACCCGGTAGCCGATGCTG 720 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 CAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATTTCGC 780 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 CGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACC 840 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 CTAGTTATCGCGGCGTATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTA 900 consensus_7296#1 ------------------------------------------------------------ consensus_7296#0 GATCAGGACTAGAGAGGGGTGTATGGATCTGACAAGTACTGTAGTATATTGTATCCCGTT 960 consensus_7296#1 ---------------------------TCTGACAAGTACTGTAGTATATTGTATCCCGTT 33 ********************************* consensus_7296#0 TGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAATGATATAAAATTCCTTCGAC 1020 consensus_7296#1 TGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAAAAAAAAAAAAAAAAAAAAAA 93 **************************************** * * **** * consensus_7296#0 TGTTCTGAAAAAAAAAAA 1038 consensus_7296#1 AAAAAAAAAAAAAAAAA- 110 ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||