These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 828 fasta sequence [AAATTCCAAAGAGCCAAAAACCCTAGCGCGCCGCATCCCCCGCCGCCGCCTCCGCCTCCGCCGCGGGTAAATCCCTCCTCGTCGTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGGCCTTTTGGGCAAGGAAGAGGCTCATGATAATGCTAAAAGGATCGAAGAGGTATGCTTTGCCTCTGCAGACGAGCATTTCAAGGAGGAGCCTGATGGGGATGGGAGTTCTGCTGTCCAGCTGTACGCAAAGGAAACTAGCAAGTTGATGCTGGAAGTTCTGAAAAGAGGGCCAAGGACCACTGTGGAACCAGAAGTACCTGTTGCTGATACACCTCTTGAGCCTGCTGATTCTGTATTTGATATATCTGGTGGCAAGCGTGCGTTTATTGAGGCAGATGAAGCGAAGGAACTTTTGAGCCCGCTTATCAAACCAGGAAATGCATATAAACGGATTTGCTTCAGCAACAGGAGCTTTGGTATTGGTGCTGCCAATGTTGCTGGACCTATTCTGGAATCAATCAAAAAGCAACTCACAGAGGTGGATATATCAGATTTTGTTGCTGGCAGACCTGAGGATGAAGCCCTTGATGTGATGCGCATCTTCTCAAAAGCTTTAGAAGGCGCTGTACTGAGATACTTGAACATCTC] [+] EMBL CF280516 [AAATTCCAAAGAGCCAAAAACCCTAGCGCGCCGCATCCCCCGCCGCCGCCTCCGCCTCCGCCGCGGGTAAATCCCTCCTCGTCGTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGGCCTTTTGGGCAAGGAAGAGGCTCATGATAATGCTAAAAGGATCGAAGAGGTATGCTTTGCCTCTGCAGACGAGCATTTCAA ] [+] EMBL CB668738 [ CCCTCCTCGTCGTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGGCCTTTTGGGCAAGGAAGAGGCTCATGATAATGCTAAAAGGATCGAAGAGGTATGCTTTGCCTCTGCAGACGAGCATTTCAAGGAGGAGCCTGATGGGGATGGGAGTTCTGCTGTCCAGCTGTACGCAAAGGAAACTAGCAAGTTGATGCTGGAAGTTCTGAAAAGAGGGCCAAGGACCACTGTGGAACCAGAAGTACCTGTTGCTGATACACCTCTTGAGCCTGCTGATTCTGTATTTGATATATCTGGTGGCAAGCGTGCGTTTATTGAGGCAGATGAAGCGAAGGAACTTTTGAGCCCGCTTATCAAACCAGGAAATGCATATAAACGGATTTGCTTCAGCAACAGGAGCTTTGGTATTGGTGCTGCCAATGTTGCTGGACCTATTCTGGAATCAATCAAAAAGCAACTCACAGAGGTGGATATATCAGATTTTGTTGCTGGCAGACCTGAGGATGAAGCCCTTGATGTGATGCGCATCTTCTCAAAAGCTTTAGAAGGCGCTGTACTGAGATACTTGAACATCTC] [+] EMBL CF305739 [ TGGTTGCTG TACTGCC TATTTT ACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGGCCTTTTGGGCAAGGAAGAGGCTCATGATAATGCTAAAAGGATCGAAGAGGTATGCTTTGCCTCTGCAGACGAGCATTTCAAGGAGGAGCCTGATGGGGATGGGAGTTCTGCTGTCCAGCTGTACGCAAAGGAAACTAGCAAGTTGATGCTGGAAGTTCTGAAAAGAGGGCCAAGGACCACTGTGGAACCAGAAGTACCTGTTGCTGATACACCTCTTGAGCCTGCTGATTCTGTATTTGATATATCTGGTGGCAAGCGTGCGTTTATTGAGGC ] consensusID : consensus_7297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [ATCTGATNGTCGGNGCCCGCGTCCGNAAAATCCNCCTTCGCCGCCTCCGCCTCCGCCGNGGGTAAATCCCTCCTCGTCCTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACANAGTCCATATTTTCNCGCAAGTACCGCCTTTTGGGCNAGGAAGANGCNCACGATATATTGTCTTATAATAGTGATCGAAGAGGTATGCCTCGCCNCNGCAGACNANCATTTCNANGANGACCTGAT] [+] EMBL AA754522 [ATCTGATNGTCGGNGCCCGCGTCCGNAAAATCCNCCTTCGCCGCCTCCGCCTCCGCCGNGGGTAAATCCCTCCTCGTCCTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACANAGTCCATATTTTCNCGCAAGTACCGCCTTTTGGGCNAGGAAGANGCNCACGATATATTGTCTTATAATAGTGATCGAAGAGGTATGCCTCGCCNCNGCAGACNANCATTTCNANGANGACCTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7297#0 AAATTCCAAAGAGCCAAAAACCCTAGCGCGCCGCATCCCCCGCCGCCGCCTCCGCCTCCG 60 consensus_7297#1 ----ATCTGATNGTCGGNG-CCCGCGTCCGNAAAATCCNCCTTCGCCGCCTCCGCCTCCG 55 * * * * *** * ** **** ** ***************** consensus_7297#0 CCGCGGGTAAATCCCTCCTCGTCGTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACA 120 consensus_7297#1 CCGNGGGTAAATCCCTCCTCGTCCTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACA 115 *** ******************* ************************************ consensus_7297#0 GGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGA 180 consensus_7297#1 GGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGA 175 ************************************************************ consensus_7297#0 TTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCAT 240 consensus_7297#1 TTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCAT 235 ************************************************************ consensus_7297#0 GCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGG 300 consensus_7297#1 GCTTGTGGAGAGGATGACCAAGAACCTTTCCACANAGTCCATATTTTCNCGCAAGTACCG 295 ********************************** ************* ********* * consensus_7297#0 CCTTTTGGGCAAGGAAGAGGCTCATGATAA-------TGCTAAAAGGATCGAAGAGGTAT 353 consensus_7297#1 CCTTTTGGGCNAGGAAGANGCNCACGATATATTGTCTTATAATAGTGATCGAAGAGGTAT 355 ********** ******* ** ** **** * * * ************** consensus_7297#0 GCTTTGCCTCTGCAGACGAGCATTTCAAGGAGGAGCCTGATGGGGATGGGAGTTCTGCTG 413 consensus_7297#1 GCCTCGCCNCNGCAGACNANCATTTCNANGANGA-CCTGAT------------------- 395 ** * *** * ****** * ****** * ** ** ****** consensus_7297#0 TCCAGCTGTACGCAAAGGAAACTAGCAAGTTGATGCTGGAAGTTCTGAAAAGAGGGCCAA 473 consensus_7297#1 ------------------------------------------------------------ consensus_7297#0 GGACCACTGTGGAACCAGAAGTACCTGTTGCTGATACACCTCTTGAGCCTGCTGATTCTG 533 consensus_7297#1 ------------------------------------------------------------ consensus_7297#0 TATTTGATATATCTGGTGGCAAGCGTGCGTTTATTGAGGCAGATGAAGCGAAGGAACTTT 593 consensus_7297#1 ------------------------------------------------------------ consensus_7297#0 TGAGCCCGCTTATCAAACCAGGAAATGCATATAAACGGATTTGCTTCAGCAACAGGAGCT 653 consensus_7297#1 ------------------------------------------------------------ consensus_7297#0 TTGGTATTGGTGCTGCCAATGTTGCTGGACCTATTCTGGAATCAATCAAAAAGCAACTCA 713 consensus_7297#1 ------------------------------------------------------------ consensus_7297#0 CAGAGGTGGATATATCAGATTTTGTTGCTGGCAGACCTGAGGATGAAGCCCTTGATGTGA 773 consensus_7297#1 ------------------------------------------------------------ consensus_7297#0 TGCGCATCTTCTCAAAAGCTTTAGAAGGCGCTGTACTGAGATACTTGAACATCTC 828 consensus_7297#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||