cluster # 7298

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Oryza sativa
cluster # 7298 cluster # 7298 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7298#0 length = 736 sequences # 2

consensus_7298#1 length = 440 sequences # 1
consensus_7298#2 length = 271 sequences # 1

consensusID : consensus_7298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 736
fasta sequence

                              [AACCAGAAGAGATTGATCCCAATACCATATCCCCGTCAATGACAAACCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGGATTATCTTTCTGCAGCAGGATTCTACAGTGAGG-CATGGA-CTTGACCTGGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGCTGGCTTTATCTGGGTGAAGGAGGCAAGGCTTTGGTGGATGCTCATAAATGCAGAAAAATGCGGCCTGACTGGCCAAAGGCCTGCTACCGTCAGGGTGCAGCTTTAATGTTACTGAAGGACTATGTGAGCGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATCCTGAGGACGTTGAGATTGAAAATGCATTACGGGAAGCTCTAGAGTTCTTGAAGGTGTCTCAAAGCACTTCGGCTAACTGAACTGTATGGGTTTTGCAGCGGATGTTCTGGTTCATGTTTTACCTTTCCACAAGGCTCTTTTGGCATTGAATCCCTGAACTGGTTCCCTTTCGTAAGTTGAATGGCGAGTCGGTGACTATCGCAGAAGTTTCATTGTGCTAACTCGAACTGACAGTGAGACATCTGAGAGTACTTTTTGCTGCATCTGTGTGATGCCCCATTATAATGTCTATGTAAACATACCGAACTACTGTTACGTCATTTTGTTGATCACTGATTATGTGCATCGGTGCTTCCTAGATAAAAAAAAAAAAAAA]

[+] EMBL D42189               [AACCAGAAGAGATTGATCCCAATACCATATCCCCGTCAATGACAAACCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGGATTATCTTTCTGCAGCAGGATTCTACAGTGAGG CATGGA CTTGACCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BP184447             [                     tcACCATATTCCCGTCAATGACAAACCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGGATTATCTTTCTGCAGCAGGATTCTACAGTGAGGCCATGGACCTTGACCCTGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGCTGGCTTTATCTGGGTGAAGGAGGCAAGGCTTTGGTGGATGCTCATAAATGCAGAAAAATGCGGCCTGACTGGCCAAAGGCCTGCTACCGTCAGGGTGCAGCTTTAATGTTACTGAAGGACTATGTGAGCGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATCCTGAGGACGTTGAGATTGAAAATGCATTACGGGAAGCTCTAGAGTTCTTGAAGGTGTCTCAAAGCACTTCGGCTAACTGAACTGTATGGGTTTTGCAGCGGATGTTCTGGTTCATGTTTTACCTTTCCACAAGGCTCTTTTGGCATTGAATCCCTGAACTGGTTCCCTTTCGTAAGTTGAATGGCGAGTCGGTGACTATCGCAGAAGTTTCATTGTGCTAACTCGAACTGACAGTGAGACATCTGAGAGTACTTTTTGCTGCATCTGTGTGATGCCCCATTATAATGTCTATGTAAACATACCGAACTACTGTTACGTCATTTTGTTGATCACTGATTATGTGCATCGGTGCTTCCTAGATAAAAAAAAAAAAAAA]




>consensus_7298#0
AACCAGAAGAGATTGATCCCAATACCATATCCCCGTCAATGACAAACCTGTGAATCGAAG
GAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGGATTATCTTTC
TGCAGCAGGATTCTACAGTGAGGCATGGACTTGACCTGGATGATGCAACCCTGCTGTCCA
ATAGGAGCCTTTGCTGGCTTTATCTGGGTGAAGGAGGCAAGGCTTTGGTGGATGCTCATA
AATGCAGAAAAATGCGGCCTGACTGGCCAAAGGCCTGCTACCGTCAGGGTGCAGCTTTAA
TGTTACTGAAGGACTATGTGAGCGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATC
CTGAGGACGTTGAGATTGAAAATGCATTACGGGAAGCTCTAGAGTTCTTGAAGGTGTCTC
AAAGCACTTCGGCTAACTGAACTGTATGGGTTTTGCAGCGGATGTTCTGGTTCATGTTTT
ACCTTTCCACAAGGCTCTTTTGGCATTGAATCCCTGAACTGGTTCCCTTTCGTAAGTTGA
ATGGCGAGTCGGTGACTATCGCAGAAGTTTCATTGTGCTAACTCGAACTGACAGTGAGAC
ATCTGAGAGTACTTTTTGCTGCATCTGTGTGATGCCCCATTATAATGTCTATGTAAACAT
ACCGAACTACTGTTACGTCATTTTGTTGATCACTGATTATGTGCATCGGTGCTTCCTAGA
TAAAAAAAAAAAAAAA

consensusID : consensus_7298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [TNCNANCNCNGNANTNTNGCNGGGGAGNANTGNGCAAGGNTCGAGGACAATAGCCTGGACATCAAGAAGCAGGACAAAGCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGAATTATCTTTCTGCAGCAGGATTTACAGTGAGATTCCGGTTCTTTCGACGCTCCGGTGTACTTCGAAATAGTCGCCGAGGTACCTCCAGCAGCAGANAAGAGCTCGAGTATGTGTCCGATGGCGGGTTCTCCGAGGAGTAGGCTTCGTCCGTGCCGTCGAGGATGCCTGTNGAGTNGTGTTCCCGCTGCCGTTCAAGTCAAGGCTTAGCTCCAGTTATCTTTTGTTTTCCGCTGCATTTCTGTAAGNTTTTACAATGTTTGTAAGACGTGGANCTGTATGTCAACATTGTCGTTTGTGT]

[+] EMBL OSC192               [TNCNANCNCNGNANTNTNGCNGGGGAGNANTGNGCAAGGNTCGAGGACAATAGCCTGGACATCAAGAAGCAGGACAAAGCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGGCTTGAGGCAGTTGAGAAGAAGAATTATCTTTCTGCAGCAGGATTTACAGTGAGATTCCGGTTCTTTCGACGCTCCGGTGTACTTCGAAATAGTCGCCGAGGTACCTCCAGCAGCAGANAAGAGCTCGAGTATGTGTCCGATGGCGGGTTCTCCGAGGAGTAGGCTTCGTCCGTGCCGTCGAGGATGCCTGTNGAGTNGTGTTCCCGCTGCCGTTCAAGTCAAGGCTTAGCTCCAGTTATCTTTTGTTTTCCGCTGCATTTCTGTAAGNTTTTACAATGTTTGTAAGACGTGGANCTGTATGTCAACATTGTCGTTTGTGT]




>consensus_7298#1
TNCNANCNCNGNANTNTNGCNGGGGAGNANTGNGCAAGGNTCGAGGACAATAGCCTGGAC
ATCAAGAAGCAGGACAAAGCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGG
CTTGAGGCAGTTGAGAAGAAGAATTATCTTTCTGCAGCAGGATTTACAGTGAGATTCCGG
TTCTTTCGACGCTCCGGTGTACTTCGAAATAGTCGCCGAGGTACCTCCAGCAGCAGANAA
GAGCTCGAGTATGTGTCCGATGGCGGGTTCTCCGAGGAGTAGGCTTCGTCCGTGCCGTCG
AGGATGCCTGTNGAGTNGTGTTCCCGCTGCCGTTCAAGTCAAGGCTTAGCTCCAGTTATC
TTTTGTTTTCCGCTGCATTTCTGTAAGNTTTTACAATGTTTGTAAGACGTGGANCTGTAT
GTCAACATTGTCGTTTGTGT

consensusID : consensus_7298#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [GGATTCTTCAGTGAGGCCATGGACCTTGACCGTGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGTTGGGTTTATGTGGGTGAAGGAGGCAAGGCTTTGGTGGATGATCATAAACGCAGAAAAATGAGGCTTGACTGGCCAAAGGCGTGTTACCGTCAGGGTGCAGATTTAATGTTACTGAAGGATTATGTGAGTGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATCTGGAGGTTGTTGAGATGGAAAACGCATTACGGGAAG]

[-] EMBL CB643233             [GGATTCTTCAGTGAGGCCATGGACCTTGACCGTGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGTTGGGTTTATGTGGGTGAAGGAGGCAAGGCTTTGGTGGATGATCATAAACGCAGAAAAATGAGGCTTGACTGGCCAAAGGCGTGTTACCGTCAGGGTGCAGATTTAATGTTACTGAAGGATTATGTGAGTGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATCTGGAGGTTGTTGAGATGGAAAACGCATTACGGGAAG]




>consensus_7298#2
GGATTCTTCAGTGAGGCCATGGACCTTGACCGTGATGATGCAACCCTGCTGTCCAATAGG
AGCCTTTGTTGGGTTTATGTGGGTGAAGGAGGCAAGGCTTTGGTGGATGATCATAAACGC
AGAAAAATGAGGCTTGACTGGCCAAAGGCGTGTTACCGTCAGGGTGCAGATTTAATGTTA
CTGAAGGATTATGTGAGTGCGTGTGAAGCACTTTTTGATGGATTCAAGTTGGATCTGGAG
GTTGTTGAGATGGAAAACGCATTACGGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7298#0      ----------------------------AACCAGAAGAGATTGATCCCAATACC----AT 28
consensus_7298#2      ------------------------------------------------------------
consensus_7298#1      TNCNANCNCNGNANTNTNGCNGGGGAGNANTGNGCAAGGNTCGAGGACAATAGCCTGGAC 60
                                                                                  

consensus_7298#0      ATCCCCGTCAATGACAAACCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGG 88
consensus_7298#2      ------------------------------------------------------------
consensus_7298#1      ATCAAGAAGCAGGACAAAGCTGTGAATCGAAGGAAAATTGCAGAGTTTAAGTCGTTAGGG 120
                                                                                  

consensus_7298#0      CTTGAGGCAGTTGAGAAGAAGGATTATCTTTCTGCAGCAGGATTCTACAGTGAGGC-ATG 147
consensus_7298#2      ---------------------------------------GGATTCTTCAGTGAGGCCATG 21
consensus_7298#1      CTTGAGGCAGTTGAGAAGAAGAATTATCTTTCTGCAGCAGGATT-TACAGTGAGATTCCG 179
                                                             ***** * *******     *

consensus_7298#0      GAC-TTGACCTGGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGCTGGCTTTATCTG 206
consensus_7298#2      GACCTTGACCGTGATGATGCAACCCTGCTGTCCAATAGGAGCCTTTGTTGGGTTTATGTG 81
consensus_7298#1      GTTCTT----TCGACGCTCCGGTG-TACTTCGAAATAGTCGCCGAGGTACCTCCAGCAGC 234
                      *   **      ** * * *     * **    *****  ***   *             

consensus_7298#0      GGTGAAGGAGGCAAGGCTTTGGTGGATGCTCATAAATGCAGAAAAATGCGGCCTGACTGG 266
consensus_7298#2      GGTGAAGGAGGCAAGGCTTTGGTGGATGATCATAAACGCAGAAAAATGAGGCTTGACTGG 141
consensus_7298#1      AGANAAGAGCTCGAGTATGTGTCCGATGG-CGGGTTCTCCGAGGAGTAGGCTTCGTCCGT 293
                       *  ***    * **  * **   ****  *       * **  * *  *    * * * 

consensus_7298#0      CCAAAGGCCTGCTACCGTCAGGGTGCAGCTTTAATGTTACTGAAGGACTATGTGAGCGCG 326
consensus_7298#2      CCAAAGGCGTGTTACCGTCAGGGTGCAGATTTAATGTTACTGAAGGATTATGTGAGTGCG 201
consensus_7298#1      GCCGTCGAGGATGCCTGTNGAGTNGTGTTCCCGCTGCCGTTCAAGTCAAGGCTTAGCTCC 353
                       *    *       * **   *  *         **    * ***       * **  * 

consensus_7298#0      TGTGAAGC---ACTTTTTGATGGATTCAAGTTGGATCCTGAGGACGTTGAGATTGAAAAT 383
consensus_7298#2      TGTGAAGC---ACTTTTTGATGGATTCAAGTTGGATCTGGAGGTTGTTGAGATGGAAAAC 258
consensus_7298#1      AGTTATCTTTTGTTTTCCGCTGCATTTCTGTAAGNTTTTACAATGTTTGTAAGACGTGGA 413
                       ** *        ***  * ** ***   **  * *          ***  *        

consensus_7298#0      GCATTACGGGAAGCTCTAGAGTTCTTGAAGGTGTCTCAAAGCACTTCGGCTAACTGAACT 443
consensus_7298#2      GCATTACGGGAAG----------------------------------------------- 271
consensus_7298#1      NCTGTATGTCAA-CATTGTCGTTTGTGT-------------------------------- 440
                       *  ** *  **                                                

consensus_7298#0      GTATGGGTTTTGCAGCGGATGTTCTGGTTCATGTTTTACCTTTCCACAAGGCTCTTTTGG 503
consensus_7298#2      ------------------------------------------------------------
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      CATTGAATCCCTGAACTGGTTCCCTTTCGTAAGTTGAATGGCGAGTCGGTGACTATCGCA 563
consensus_7298#2      ------------------------------------------------------------
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      GAAGTTTCATTGTGCTAACTCGAACTGACAGTGAGACATCTGAGAGTACTTTTTGCTGCA 623
consensus_7298#2      ------------------------------------------------------------
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      TCTGTGTGATGCCCCATTATAATGTCTATGTAAACATACCGAACTACTGTTACGTCATTT 683
consensus_7298#2      ------------------------------------------------------------
consensus_7298#1      ------------------------------------------------------------
                                                                                  

consensus_7298#0      TGTTGATCACTGATTATGTGCATCGGTGCTTCCTAGATAAAAAAAAAAAAAAA 736
consensus_7298#2      -----------------------------------------------------
consensus_7298#1      -----------------------------------------------------