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Oryza sativa
cluster # 7300 cluster # 7300       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7300#0 length = 685 sequences # 2  
consensus_7300#1 length = 649 sequences # 1  
consensus_7300#2 length = 488 sequences # 1  

consensusID : consensus_7300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 685
fasta sequence
                              [GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAGTCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACCGACACCGTCGTCAAGCTCAACCTCCAGATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCTGCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGCGGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAGTTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAACTGTTGTGGCATAAGGAAGCCTGTTTTG]

[+] EMBL AK107448             [GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAGTCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACCGACACCGTCGTCAAGCTCAACCTCCAGATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCTGCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGCGGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAGTTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAACTGTTGTGGCATAAGGAAGCCTGTTTTG]
[+] EMBL AU069533             [GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTTCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGNCACATCATCAGCTt                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_7300#0 GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCC ATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTC GCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTC CCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGC TCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACC GAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAG TCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACCGAC ACCGTCGTCAAGCTCAACCTCCAGATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCTGCT TCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGCGGC GGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAGTTT TGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAACTG TTGTGGCATAAGGAAGCCTGTTTTG



consensusID : consensus_7300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence
                              [GCAACGTGCACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGGTCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGACAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGATGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCATACTTGGAGGCAGGCAGAGGGCGGGCCGAGTGCGTGCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTACTCGGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGTGGGGTACTTGTAACAT]

[+] EMBL BE040660             [GCAACGTGCACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGGTCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGACAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGATGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCATACTTGGAGGCAGGCAGAGGGCGGGCCGAGTGCGTGCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTACTCGGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGTGGGGTACTTGTAACAT]


>consensus_7300#1 GCAACGTGCACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCC ATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTC GCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTC CCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGC TTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACC GAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGG TCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGA CAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGA TGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCATACTTGGAGGCAGGCAGAGGGCGGG CCGAGTGCGTGCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTACTC GGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGTGGGGTACTTGTAACAT



consensusID : consensus_7300#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence
                              [ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTAGGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCCGGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATGTTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGATCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTCAGCCTCCCGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATCTTCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACCGAGTTCCAGTCGCCCGGCGCTGCCCCGGCGTACTGCGTCGTGGAAGAGAGAAAGGAGGGAGAAAGAGGGAAGATAGAT]

[-] EMBL AU065165             [ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTAGGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCCGGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATGTTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGATCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTCAGCCTCCCGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATCTTCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACCGAGTTCCAGTCGCCCGGCGCTGCCCCGGCGTACTGCGTCGTGGAAGAGAGAAAGGAGGGAGAAAGAGGGAAGATAGAT]


>consensus_7300#2 ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTA GGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCC GGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATG TTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGA TCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTCAGCCTCC CGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATCT TCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACCGAGTTCCAGT CGCCCGGCGCTGCCCCGGCGTACTGCGTCGTGGAAGAGAGAAAGGAGGGAGAAAGAGGGA AGATAGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7300#0      ------------------------------------------------------------
consensus_7300#1      ------------------------------------------------------------
consensus_7300#2      ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTA 60
                                                                                  

consensus_7300#0      ---------------------------------------------------GCAACGTGC 9
consensus_7300#1      ---------------------------------------------------GCAACGTGC 9
consensus_7300#2      GGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCC 120
                                                                            * *  *

consensus_7300#0      ACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTG-TGGCCCATCGTGCG 68
consensus_7300#1      ACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTG-TGGCCCATCGTGCG 68
consensus_7300#2      GGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATG 180
                           *      *** **     ***** ** ** **  ****** **** ** *    *

consensus_7300#0      CAGCT--TCGGCAAC-CCGCAGCGGTACAAGCACTTCGTCCGCA-CCTGCGCC--CTCG- 121
consensus_7300#1      CAGCT--TCGGCAAC-CCGCAGCGGTACAAGCACTTCGTCCGCA-CCTGCGCC--CTCG- 121
consensus_7300#2      TTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGA 240
                         *    ***** * ** * * * *  *    ***********  * ** **  **** 

consensus_7300#0      -CCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTC 180
consensus_7300#1      -CCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTC 180
consensus_7300#2      TCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTC-AGCCTC 299
                       **  ************************ *************** *******  *****

consensus_7300#0      CCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGC 240
consensus_7300#1      CCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGC 240
consensus_7300#2      CCGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATC 359
                      ***** ***************************** ****** ************* * *

consensus_7300#0      TCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACC 300
consensus_7300#1      TTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACC 300
consensus_7300#2      TTCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACC--------- 410
                      * * ** *** ********* ** ***************************         

consensus_7300#0      GAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAG 360
consensus_7300#1      GAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGG 360
consensus_7300#2      GAGTTCCAGTCGCCCGGCG------------CTGCCCCGGCGTACTGCGTCGTGGAAGAG 458
                      ********* ****** **            * ****** *  *********  *  * *

consensus_7300#0      TCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACC-GA 419
consensus_7300#1      TCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGA 420
consensus_7300#2      AGAAAGGAGGGAGAAA-----GAGGGAAGATAGAT------------------------- 488
                          * *  *  **       ** ** *    *                           

consensus_7300#0      CACCGTCGTCAAGCTCAAC-CTCCA-GATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCT 477
consensus_7300#1      CAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGA 480
consensus_7300#2      ------------------------------------------------------------
                                                                                  

consensus_7300#0      GCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGC 537
consensus_7300#1      TGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCA-TACTTGGAGGCAGGCAGAGGGCGG 539
consensus_7300#2      ------------------------------------------------------------
                                                                                  

consensus_7300#0      GGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAG 597
consensus_7300#1      GCCGAGTGCGT-GCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTAC 598
consensus_7300#2      ------------------------------------------------------------
                                                                                  

consensus_7300#0      TTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAA 657
consensus_7300#1      TCGGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGT------GGGGTACTTGTAACAT--- 649
consensus_7300#2      ------------------------------------------------------------
                                                                                  

consensus_7300#0      CTGTTGTGGCATAAGGAAGCCTGTTTTG 685
consensus_7300#1      ----------------------------
consensus_7300#2      ----------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)