These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence [GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAGTCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACCGACACCGTCGTCAAGCTCAACCTCCAGATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCTGCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGCGGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAGTTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAACTGTTGTGGCATAAGGAAGCCTGTTTTG] [+] EMBL AK107448 [GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAGTCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACCGACACCGTCGTCAAGCTCAACCTCCAGATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCTGCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGCGGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAGTTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAACTGTTGTGGCATAAGGAAGCCTGTTTTG] [+] EMBL AU069533 [GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTTCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGNCACATCATCAGCTt ] consensusID : consensus_7300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [GCAACGTGCACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGGTCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGACAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGATGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCATACTTGGAGGCAGGCAGAGGGCGGGCCGAGTGCGTGCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTACTCGGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGTGGGGTACTTGTAACAT] [+] EMBL BE040660 [GCAACGTGCACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGGTCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGACAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGATGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCATACTTGGAGGCAGGCAGAGGGCGGGCCGAGTGCGTGCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTACTCGGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGTGGGGTACTTGTAACAT] consensusID : consensus_7300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTAGGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCCGGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATGTTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGATCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTCAGCCTCCCGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATCTTCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACCGAGTTCCAGTCGCCCGGCGCTGCCCCGGCGTACTGCGTCGTGGAAGAGAGAAAGGAGGGAGAAAGAGGGAAGATAGAT] [-] EMBL AU065165 [ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTAGGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCCGGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATGTTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGATCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTCAGCCTCCCGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATCTTCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACCGAGTTCCAGTCGCCCGGCGCTGCCCCGGCGTACTGCGTCGTGGAAGAGAGAAAGGAGGGAGAAAGAGGGAAGATAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7300#0 ------------------------------------------------------------ consensus_7300#1 ------------------------------------------------------------ consensus_7300#2 ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTA 60 consensus_7300#0 ---------------------------------------------------GCAACGTGC 9 consensus_7300#1 ---------------------------------------------------GCAACGTGC 9 consensus_7300#2 GGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCC 120 * * * consensus_7300#0 ACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTG-TGGCCCATCGTGCG 68 consensus_7300#1 ACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTG-TGGCCCATCGTGCG 68 consensus_7300#2 GGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATG 180 * *** ** ***** ** ** ** ****** **** ** * * consensus_7300#0 CAGCT--TCGGCAAC-CCGCAGCGGTACAAGCACTTCGTCCGCA-CCTGCGCC--CTCG- 121 consensus_7300#1 CAGCT--TCGGCAAC-CCGCAGCGGTACAAGCACTTCGTCCGCA-CCTGCGCC--CTCG- 121 consensus_7300#2 TTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGA 240 * ***** * ** * * * * * *********** * ** ** **** consensus_7300#0 -CCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTC 180 consensus_7300#1 -CCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTC 180 consensus_7300#2 TCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTC-AGCCTC 299 ** ************************ *************** ******* ***** consensus_7300#0 CCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGC 240 consensus_7300#1 CCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGC 240 consensus_7300#2 CCGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATC 359 ***** ***************************** ****** ************* * * consensus_7300#0 TCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACC 300 consensus_7300#1 TTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACC 300 consensus_7300#2 TTCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACC--------- 410 * * ** *** ********* ** *************************** consensus_7300#0 GAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAG 360 consensus_7300#1 GAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGG 360 consensus_7300#2 GAGTTCCAGTCGCCCGGCG------------CTGCCCCGGCGTACTGCGTCGTGGAAGAG 458 ********* ****** ** * ****** * ********* * * * consensus_7300#0 TCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACC-GA 419 consensus_7300#1 TCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGA 420 consensus_7300#2 AGAAAGGAGGGAGAAA-----GAGGGAAGATAGAT------------------------- 488 * * * ** ** ** * * consensus_7300#0 CACCGTCGTCAAGCTCAAC-CTCCA-GATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCT 477 consensus_7300#1 CAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGA 480 consensus_7300#2 ------------------------------------------------------------ consensus_7300#0 GCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGC 537 consensus_7300#1 TGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCA-TACTTGGAGGCAGGCAGAGGGCGG 539 consensus_7300#2 ------------------------------------------------------------ consensus_7300#0 GGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAG 597 consensus_7300#1 GCCGAGTGCGT-GCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTAC 598 consensus_7300#2 ------------------------------------------------------------ consensus_7300#0 TTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAA 657 consensus_7300#1 TCGGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGT------GGGGTACTTGTAACAT--- 649 consensus_7300#2 ------------------------------------------------------------ consensus_7300#0 CTGTTGTGGCATAAGGAAGCCTGTTTTG 685 consensus_7300#1 ---------------------------- consensus_7300#2 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||