cluster # 7303

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Oryza sativa
cluster # 7303 cluster # 7303 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7303#0 length = 795 sequences # 3

consensus_7303#1 length = 666 sequences # 1

consensusID : consensus_7303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 795
fasta sequence

                              [GATGCTAACAGAAAAAACACGCTTGACTGGCCGACAAGGTTCAAGATAATTAAAGGAGTAGCAAGAGGTCTTCTTTATCTTCACCAGGATTCAAGATTAACAATAATCCATAGAGATCTAAAGACAAGCAACATTTTGTTGGACACAGAAATGAGTCCTAAAATATCAGATTTCGGCATGGCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATATGGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTATAGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACAATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGNGNTCATGCTGGAGAACGAAACTGGCGNGCTTNCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGGGGATCAAGGATCTCTGGACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTTAAAAAGGTTCTACTG]

[+] EMBL CA764224             [GATGCTAACAGAAAAAACACGCTTGACTGGCCGACAAGGTTCAAGATAATTAAAGGAGTAGCAAGAGGTCTTCTTTATCTTCACCAGGATTCAAGATTAACAATAATCCATAGAGATCTAAAGACAAGCAACATTTTGTTGGACACAGAAATGAGTCCTAAAATATCAAATTTCGGCATGGCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATATGGTTACATGTCTCCTGAATACGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTATAGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACAATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGNGNTCATGCTGGAGAACGAAACTGGCGNGCTTNCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGGGGATCAAGGATCTCTGGACCACATGAGTAAAACAGCAGAAG                                                                                                         ]
[+] EMBL CB000018             [                                                                                                              TAGAGATCTAAAGACAAGCAACATTTTGTTGGACCCTGAAATGAGTCCTAAAATATCAGATTTCGGCATGGCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATATGGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTATAGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACGATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGTGTTCATGCTGGAGAACGAAACTGCCGTGCTTCCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCAT GAGATCAA GATCTCTGAACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTTAAAAAGGTTCTACTG]
[+] EMBL CA999502             [                                                                                                               AGAGATCTAAAGACAAGCAACATTTTGTTGGACACAGAAATGAGTCCTAAAATATCAGATTTCGGCATGGCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATATGGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTATAGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAA                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_7303#0
GATGCTAACAGAAAAAACACGCTTGACTGGCCGACAAGGTTCAAGATAATTAAAGGAGTA
GCAAGAGGTCTTCTTTATCTTCACCAGGATTCAAGATTAACAATAATCCATAGAGATCTA
AAGACAAGCAACATTTTGTTGGACACAGAAATGAGTCCTAAAATATCAGATTTCGGCATG
GCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATAT
GGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTAT
AGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTC
AAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCA
AGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACAATGT
ATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCC
ATTGNGNTCATGCTGGAGAACGAAACTGGCGNGCTTNCTGCTCCAAAGGAGCCTATATAT
TTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGGGGATCAAGGAT
CTCTGGACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTAC
AGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTT
AAAAAGGTTCTACTG

consensusID : consensus_7303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [ACGAGTCCTCAAATATCACATTTGCGCCGGCCAAGCGTTTTTGGTCGTAATGACGGCCAAGGTCATTGCCTCAGGGTTCTCGGCGCATATGGTTCCATGTTCCCTAAATCGCCTTTGAAGGCTATTTTTCGGTCAAGTCTGACACCTATAGGTTTGGTGTCATACGGTGGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTACAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACGATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGTGTACATGCTGGAGAACGAAACTGCCGTGCTTCCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGAGATCAAGATCTTTGAACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTTAAAAAGGTTCTACTGGATACTCCATTAAAAAAAAAAAAA]

[-] EMBL CA759479             [ACGAGTCCTCAAATATCACATTTGCGCCGGCCAAGCGTTTTTGGTCGTAATGACGGCCAAGGTCATTGCCTCAGGGTTCTCGGCGCATATGGTTCCATGTTCCCTAAATCGCCTTTGAAGGCTATTTTTCGGTCAAGTCTGACACCTATAGGTTTGGTGTCATACGGTGGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTACAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACGATGTATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCCATTGTGTACATGCTGGAGAACGAAACTGCCGTGCTTCCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGAGATCAAGATCTTTGAACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTTAAAAAGGTTCTACTGGATACTCCATTAAAAAAAAAAAAA]




>consensus_7303#1
ACGAGTCCTCAAATATCACATTTGCGCCGGCCAAGCGTTTTTGGTCGTAATGACGGCCAA
GGTCATTGCCTCAGGGTTCTCGGCGCATATGGTTCCATGTTCCCTAAATCGCCTTTGAAG
GCTATTTTTCGGTCAAGTCTGACACCTATAGGTTTGGTGTCATACGGTGGGAAGTTGTGA
GTGGCTTAAAGATCAGTTCAGCCCATCTCAAAGTGGACTGTTCAAACCTTACAGCCTATG
CATGGAGTTTATGGAAAGATGGAAATGCAAGGGATTTCGTAGACTCATCCATTGTGGAGA
GCTGTCCACTTCATGAAGTTCTACGATGTATACATTTAGGACTCCTTTGCATTCAAGATC
AACCAAGTGCTAGGCCACTGATGTCATCCATTGTGTACATGCTGGAGAACGAAACTGCCG
TGCTTCCTGCTCCAAAGGAGCCTATATATTTCACAAGGAGGGAGTACGGGACAGACGAAG
ACACGAGAGATAGCATGAGATCAAGATCTTTGAACCACATGAGTAAAACAGCAGAAGATG
GGCGTTAAATGGTTAATTCCGCTGTACAGATCCCAATTTTTTAAAACTGTTATTCCAATT
GAACAATACCATTACATTGTTTGATTTAAAAAGGTTCTACTGGATACTCCATTAAAAAAA
AAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7303#0      GATGCTAACAGAAAAAACACGCTTGACTGGCCGACAAGGTTCAAGATAATTAAAGGAGTA 60
consensus_7303#1      ------------------------------------------------------------
                                                                                  

consensus_7303#0      GCAAGAGGTCTTCTTTATCTTCACCAGGATTCAAGATTAACAATAATCCATAGAGATCTA 120
consensus_7303#1      ------------------------------------------------------------
                                                                                  

consensus_7303#0      AAGACAAGCAACATTTTGTTGGACACAGAAATGAGTCCTAAAATATCAGATTTCGGCATG 180
consensus_7303#1      ------------------------------ACGAGTCCTCAAATATCACATTTGCGCCGG 30
                                                    * ******* ******** ****  **  *

consensus_7303#0      GCAAGGATCTTTGGTGGAAATGAGCAACAAGCTAATACCACCAGGGTTGTCGGCACATAT 240
consensus_7303#1      CCAAGCGTTTTTGGTCGTAATGACGGCCAAGGTCATTGCCTCAGGGTTCTCGGCGCATAT 90
                       ****  * ****** * *****    **** * **  *  ******* ***** *****

consensus_7303#0      GGTTACATGTCTCCTGAATATGCTTTGGATGGCTATTTTTCCGTCAAGTCTGACACCTAT 300
consensus_7303#1      GGTTCCATGTTCCCTAAAT-CGCCTTTGAAGGCTATTTTTCGGTCAAGTCTGACACCTAT 149
                      **** *****  *** ***  ** ** ** *********** ******************

consensus_7303#0      AGTTTTGGTGTCATACTGTTGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTC 360
consensus_7303#1      AGGTTTGGTGTCATACGGTGGGAAGTTGTGAGTGGCTTAAAGATCAGTTCAGCCCATCTC 209
                      ** ************* ** ****************************************

consensus_7303#0      AAAGTGGACTGTTCAAACCTTATAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCA 420
consensus_7303#1      AAAGTGGACTGTTCAAACCTTACAGCCTATGCATGGAGTTTATGGAAAGATGGAAATGCA 269
                      ********************** *************************************

consensus_7303#0      AGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACAATGT 480
consensus_7303#1      AGGGATTTCGTAGACTCATCCATTGTGGAGAGCTGTCCACTTCATGAAGTTCTACGATGT 329
                      ******************************************************* ****

consensus_7303#0      ATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCC 540
consensus_7303#1      ATACATTTAGGACTCCTTTGCATTCAAGATCAACCAAGTGCTAGGCCACTGATGTCATCC 389
                      ************************************************************

consensus_7303#0      ATTGNGNTCATGCTGGAGAACGAAACTGGCGNGCTTNCTGCTCCAAAGGAGCCTATATAT 600
consensus_7303#1      ATTGTGTACATGCTGGAGAACGAAACTGCCGTGCTTCCTGCTCCAAAGGAGCCTATATAT 449
                      **** *  ******************** ** **** ***********************

consensus_7303#0      TTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGGGGATCAAGGAT 660
consensus_7303#1      TTCACAAGGAGGGAGTACGGGACAGACGAAGACACGAGAGATAGCATGAG-ATCAAG-AT 507
                      ************************************************ * ****** **

consensus_7303#0      CTCTGGACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTAC 720
consensus_7303#1      CTTTGAACCACATGAGTAAAACAGCAGAAGATGGGCGTTAAATGGTTAATTCCGCTGTAC 567
                      ** ** ******************************************************

consensus_7303#0      AGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTT 780
consensus_7303#1      AGATCCCAATTTTTTAAAACTGTTATTCCAATTGAACAATACCATTACATTGTTTGATTT 627
                      ************************************************************

consensus_7303#0      AAAAAGGTTCTACTG------------------------ 795
consensus_7303#1      AAAAAGGTTCTACTGGATACTCCATTAAAAAAAAAAAAA 666
                      ***************