These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [TGGCCGCCGCCACCACCATCGCGGCCGGGCCAAGCTNCCGCGGGCCGGCGTAAGGGTGGCGTCGGCGGCCGAGGATCAGAAGAAGGACGGCGGCGGCGACGCGGGCGCCGCGGCGATGCCGGTGGCGCTGGANCGGCAGGAGGCGAAGACGAAGACGGCGGGCCGCCTCATCGCGACGCAGGGGGACGACAAGANCGGCGGCGGCGGCGGCAACGAGCACGGCAAGGAGGGAGGCGGCGGCGGCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGCTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACCTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGAAAAAAAAAAAAAAA] [+] EMBL AU094701 [TGGCCGCCGCCACCACCATCGCGGCCGGGCCAAGCTNCCGCGGGCCGGCGTAAGGGTGGCGTCGGCGGCCGAGGATCAGAAGAAGGACGGCGGCGGCGACGCGGGCGCCGCGGCGATGCCGGTGGCGCTGGANCGGCAGGAGGCGAAGACGAAGACGGCGGGCCGCCTCATCGCGACGCAGGGGGACGACAAGANCGGCGGCGGCGGCGGCAACGAGCACGGCAAGGAGGGAGGCGGCGGCGGCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGCTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACCTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGAAAAAAAAAAAAAAA] consensusID : consensus_731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [GCAAGGAGGGAGGCGGCGGCGNCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGCATGGTAGGTCCTTTGTCGTGTGAAATGTGGTTACGAGTTTAATGAGATTGTATGTTGGTTTGTTTGAAAAAAAAAAAAAAA] [+] EMBL AU029356 [GCAAGGAGGGAGGCGGCGGCGNCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGCATGGTAGGTCCTTTGTCGTGTGAAATGTGGTTACGAGTTTAATGAGATTGTATGTTGGTTTGTTTGAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_731#0 TGGCCGCCGCCACCACCATCGCGGCCGGGCCAAGCTNCCGCGGGCCGGCGTAAGGGTGGC 60 consensus_731#1 ------------------------------------------------------------ consensus_731#0 GTCGGCGGCCGAGGATCAGAAGAAGGACGGCGGCGGCGACGCGGGCGCCGCGGCGATGCC 120 consensus_731#1 ------------------------------------------------------------ consensus_731#0 GGTGGCGCTGGANCGGCAGGAGGCGAAGACGAAGACGGCGGGCCGCCTCATCGCGACGCA 180 consensus_731#1 ------------------------------------------------------------ consensus_731#0 GGGGGACGACAAGANCGGCGGCGGCGGCGGCAACGAGCACGGCAAGGAGGGAGGCGGCGG 240 consensus_731#1 -----------------------------------------GCAAGGAGGGAGGCGGCGG 19 ******************* consensus_731#0 CGGCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAA 300 consensus_731#1 CGNCGGCAAGGAGGCGGAGAAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAA 79 ** ********************************************************* consensus_731#0 GAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTGCTCCGCCAAGTG 360 consensus_731#1 GAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCACACCAAGTG-TCCGCCAAGTG 138 ************************************************ *********** consensus_731#0 CTCCAAGTCCTGCATCCCCACCTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCA 420 consensus_731#1 CTCCAAGTCCTGCATCCCCAC-TGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCCA 197 ********************* ************************************** consensus_731#0 TCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTG 480 consensus_731#1 TCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTG 257 ************************************************************ consensus_731#0 GTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATA 540 consensus_731#1 GTAAAGAAGGGAATAAGCAGGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATA 317 ************************************************************ consensus_731#0 TGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTAT 600 consensus_731#1 TGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGTTGTTCTAGTCTTCTTAATTAT 377 ************************************************************ consensus_731#0 ATGGTGTTTTTGATGTTGAAAAAAAAAAAAAAA--------------------------- 633 consensus_731#1 ATGGTGTTTTTGATGTTGCATGGTAGGTCCTTTGTCGTGTGAAATGTGGTTACGAGTTTA 437 ****************** * * consensus_731#0 ---------------------------------------- consensus_731#1 ATGAGATTGTATGTTGGTTTGTTTGAAAAAAAAAAAAAAA 477 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||