These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [GCTAATTCGCGTCATTCATCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTGTCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGCAGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGCAGGTGTGCGCGGCGGCGGCGGACGCGGCGTGCCCGGCGTGCGGGTGCGCCAAGAATGGCAGCGTCAGCGTCAACTTTTCGTGAGCGATGGCGGAGGGAAAGGAGTAATAGCAATTAGACTAGATTTTTTTTCTTTTCTTTTCTTTTTTTTCTCTCTCTCCTCCGTTTTTTTTCTTTTCTGTTTTGGTTTAGCTGATGGGGATAATAGGGCGATATGGTCTAATGATGTGGATATGAGGGGATGAGTTTTCCTTTTTTGTGTTGGATCAATTTGATCAACAAGGAAAAAAAACATA] [+] EMBL AK064871 [GCTAATTCGCGTCATTCATCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTGTCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGCAGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGCAGGTGTGCGCGGCGGCGGCGGACGCGGCGTGCCCGGCGTGCGGGTGCGCCAAGAATGGCAGCGTCAGCGTCAACTTTTCGTGAGCGATGGCGGAGGGAAAGGAGTAATAGCAATTAGACTAGATTTTTTTTCTTTTCTTTTCTTTTTTTTCTCTCTCTCCTCCGTTTTTTTTCTTTTCTGTTTTGGTTTAGCTGATGGGGATAATAGGGCGATATGGTCTAATGATGTGGATATGAGGGGATGAGTTTTCCTTTTTTGTGTTGGATCAATTTGATCAACAAGGAAAAAAAACATA] consensusID : consensus_7314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 609 fasta sequence [TCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTGTCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGCAGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGCAGGTGTGCCCGGCGGCGGCGGACGCGGCGGAGAGCGGCGTCACGTTCGGCGGCGGGCAGGAGGCGGCGGCGCCGAGGAAGAGGAAGCGCGCCGAGGTGCCGGTGGTTCTTGGCGCCGCGGGCGACGTGGCCGTGGCGGCGCAGGCTCGCCAGCAGCTGGTCGACGTCGACCGCCTCGTGCTCCACCATGCGGCGAAGATGTGGGCGGAGCTTGCGGAGCACAGGGGGAGGCACGCGAGGCAGATGGTGGCCACCGTGGAAGCCGCGGCGGCGAGGCGGCTGAGGGCCAAGGACGAGGAGATCGAGCGGA] [+] EMBL CB657618 [TCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTGTCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGCAGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGCAGGTGTGCCCGGCGGCGGCGGACGCGGCGGAGAGCGGCGTCACGTTCGGCGGCGGGCAGGAGGCGGCGGCGCCGAGGAAGAGGAAGCGCGCCGAGGTGCCGGTGGTTCTTGGCGCCGCGGGCGACGTGGCCGTGGCGGCGCAGGCTCGCCAGCAGCTGGTCGACGTCGACCGCCTCGTGCTCCACCATGCGGCGAAGATGTGGGCGGAGCTTGCGGAGCACAGGGGGAGGCACGCGAGGCAGATGGTGGCCACCGTGGAAGCCGCGGCGGCGAGGCGGCTGAGGGCCAAGGACGAGGAGATCGAGCGGA] [+] EMBL OSS1589A [TCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCNGCCGCCGGCNAGGTTNTCGTCGGCGGCGCCNGTGGCGGGNTGATGGCGGGGCTTTG CAGGAGGAGCANCTNGTNCANGGGTACCG ] consensusID : consensus_7314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [CGCANGNGTGNTCATCCCGATCGCCATGGNCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGNCTGCTGAATCCATGTTCTCGCCGAGGCAGNCTTGTTTTGGCGCTGNCGCCGGCGAGGTTGTCGTCGGCGNCGNCGNTGGCGGNNTGATGACGGGGCTTTNCCANGAGGAGCANCTGGTGC] [+] EMBL OSC100631 [CGCANGNGTGNTCATCCCGATCGCCATGGNCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGNCTGCTGAATCCATGTTCTCGCCGAGGCAGNCTTGTTTTGGCGCTGNCGCCGGCGAGGTTGTCGTCGGCGNCGNCGNTGGCGGNNTGATGACGGGGCTTTNCCANGAGGAGCANCTGGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7314#1 ------------------TCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCA 42 consensus_7314#2 ----------------------------------------------CGCANGNGTGNTCA 14 consensus_7314#0 GCTAATTCGCGTCATTCATCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCA 60 **** * *** *** consensus_7314#1 TCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGC 102 consensus_7314#2 TCCCGATCGCCATGGNCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGN 74 consensus_7314#0 TCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGC 120 *************** ******************************************* consensus_7314#1 CTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTG 162 consensus_7314#2 CTGCTGAATCCATGTTCTCGCCGAGGCAGNCTTGTTTTGGCGCTGNCGCCGGCGAGGTTG 134 consensus_7314#0 CTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTG 180 ***************************** ******* ***** * ************** consensus_7314#1 TCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGC 222 consensus_7314#2 TCGTCGGCGNCGNCGNTGGCGGNNTGATGACGGGGCTTTNCCANGAGGAGCANCTGGTGC 194 consensus_7314#0 TCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGC 240 ********* ** ** ***** ***** ********* *** ******** ******* consensus_7314#1 AGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGG 282 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 AGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGG 300 consensus_7314#1 TGATGAGGCAGTACTCGCAGGTGTGCCCGGCGGCGGCGGACGCGGCGGAGAGCGGCGTCA 342 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 TGATGAGGCAGTACTCGCAGGTGTGCGCGGCGGCGGCGGACGCGGCGT-GCCCGGCGTGC 359 consensus_7314#1 CGTTCGGCGGCGGGCAGGAGGCGGCGGCGCCGAGGAAGAGGAAGCG-CGCCGAGGTGCCG 401 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 GGGTGCGCCAAGAATGGCAG-CGTCAGCGTCAACTTTTCGTGAGCGATGGCGGAGGGAAA 418 consensus_7314#1 GTGGTTCTTGGCGCCGCGGGCGACGTGGCCGTGGCGGCGCAGGCTCGCCAGCAGCTGGTC 461 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 GGAGTAATAGCAATT--AGACTAGATTTTTTTTCTTTT-----CTTTTCTTTTTTTTCTC 471 consensus_7314#1 GACGTCGACCGCCTCGTGCTCCACCATGCGGCGAAGATGTGGGCGGAGCTTGCGGAGCAC 521 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 TCTCTCCTCCGTTTT-TTTTCTTTTCTGTTTTGGTTTAGCTGATGGGGATAATAGGGC-- 528 consensus_7314#1 AGGGGGAGGCACGCGAGGCAGATGGTGGCCACCGTGGAAGCCGCGGCGGCGAGGCGGCTG 581 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 -GATATGGTCTAATGATGTGGATATGAG--GGGATGAGTTTTCCTTTTTTGTGTTGGATC 585 consensus_7314#1 AGGGCCAAGGACGAGGAGATCGAGCGGA 609 consensus_7314#2 ---------------------------- consensus_7314#0 AATTTGATCAACAAGGAAAAAAAACATA 613 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||