These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 867 fasta sequence [CAAAGAAACGAAGACGAAAAGACTCATCAGGGTCTTATGTTGAGAATAACAAGGAATTTTCTCCAGGGTCTTCCGCATACATGGGCACGCCGTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGAGAAGAGTACTAGTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGGTTGCATGCTTCCAGTAACATCTATTCAACAGAAACAATGCACTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTACCAGACTTGAGCGAGCTATCCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGATTCTTGATGTACATGAGGCTGATGCAAATTGCCAGGTAGCAGTTAAAAGAAGATTGCCACAAGAAGTAAAACAAAAACTTGCTAAGGTCGCAAGGCTATCGGCAAATCAAGGAAAAATACCAGAACATGAGCTGATCAATCGCCTCATGGGCATAGTTGGCCACCTTGTGCACCGTAGGACACTGAAGAGAAACATGAAAGAAATGGTGCAATCAGGTTTATGTGCTAAACAAGAGAAGGCTGGGAAATTGCAACAAGTGAAAATGGAAATCTATGNNNTGGTCAANNNACGTCTAGCCACCAAACCTAAGGGTGCTGAACATAAGGTTGAATCTATNNNTGGCTTNCANGATCCTGTNANNNANNNTGNNNNNATGGCCTNGNNNNNNAAATCTGT] [+] EMBL CB673736 [CAAAGAAACGAAGACGAAAAGACTCATCAGGGTCTTATGTTGAGAATAACAAGGAATTTTCTCCAGGGTCTTCCGCATACATGGGCACGCCGTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGAGAAGAGTACTAGTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGGTTGCATGCTTCCAGTAACATCTATTCAACAGAAACAATGCACTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTACCAGACTTGAGCGAGCTATCCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGATTCTTGATGTACATGAGGCTGATGCAAATTGCCAGGTAGCAGTTAAAAGAAGATTGCCACAAGAAGTAAAACAAAAACTTGCTAAGGTCGCAAGGCTA ] [+] EMBL CF197185 [ AACAATGCACTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTACCAGACTTGAGCGAGCTATCCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGATTCTTGATGTACATGAGGCTGAGGCAAATTGCCAGGTAGCAGTTAAAAGAAGATTGCCACAAGAAGTAAAACAAAAACTTGCTAAGGTCGCAAGGTTATCGGCAAATCAAGGAAAAATACCAGAACATGAGCTGATCAATCGCCTCATGGGCATAGTTGGCCACCTTGTGCACCGTAGGACACTGAAGAGAAACATGAAAGAAATGGTGCAATCAGGTTTATGTGCTAAACAAGAGAAGGCTGGGAAATTGCAACAAGTGAAAATGGAAATCTATGNNNTGGTCAANNNACGTCTAGCCACCAAACCTAAGGGTGCTGAACATAAGGTTGAATCTATNNNTGGCTTNCANGATCCTGTNANNNANNNTGNNNNNATGGCCTNGNNNNNNAAATCTGT] consensusID : consensus_7315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence [GTCGTGGACGAAGATGCTCAAGGAGGCTGGCCTCGGAGCTGCCTTGCCGCCCCCGCTGCCGGCGGCGGCGGCACAGCCGGCGGTCGCCCCCCTCCCTGGACCATCTGGTGCGACACATCCTACAGAAAATGACTGCGCACAATCAAATCGGTTCAATTCAGTTATTGAGAAAATTGAGCGCCTTTACATGGGCAAAAATAGTAGTGATGAGGAAGACTTGGATGATGCGCCTGATGATGATCAGTATGACACAGAAGATTCGTTTATTGATGATGATGAATTGGATGAATATTTTGAAGTTGACAATTTTGCAACCAAGCACAATGGTTATTTTGTGAACAAAGGAAAATTGGAACAAATTGACTTTGATTCAGTACAGACTGTTGAACCAAAGAAACAAAGACGAAAAGATTCATCAAGTTCTTATATTGAGAATAACAAGGAATTTGCTCCAGGCTCTTCCTCATACATGGGCACGCCTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGGAAGAGTACTATTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGTTTGCATGCTTCCAGTAACATCTATTCAACAGAAACAATGGTAAGAATCAAGGAAACTGGTATTGTGACTTGTGAGCATGGTGCAAACCATAGTTATCTTTTCATCCCCCAAGTACATGGCA] [+] EMBL CB631701 [GTCGTGGACGAAGATGCTCAAGGAGGCTGGCCTCGGAGCTGCCTTGCCGCCCCCGCTGCCGGCGGCGGCGGCACAGCCGGCGGTCGCCCCCCTCCCTGGACCATCTGGTGCGACACATCCTACAGAAAATGACTGCGCACAATCAAATCGGTTCAATTCAGTTATTGAGAAAATTGAGCGCCTTTACATGGGCAAAAATAGTAGTGATGAGGAAGACTTGGATGATGCGCCTGATGATGATCAGTATGACACAGAAGATTCGTTTATTGATGATGATGAATTGGATGAATATTTTGAAGTTGACAATTTTGCAACCAAGCACAATGGTTATTTTGTGAACAAAGGAAAATTGGAACAAATTGACTTTGATTCAGTACAGACTGTTGAACCAAAGAAACAAAGACGAAAAGATTCATCAAGTTCTTATATTGAGAATAACAAGGAATTTGCTCCAGGCTCTTCCTCATACATGGGCACGCCTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGGAAGAGTACTATTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGTTTGCATGCTTCCAGTAACATCTATTCAACAGAAACAATGGTAAGAATCAAGGAAACTGGTATTGTGACTTGTGAGCATGGTGCAAACCATAGTTATCTTTTCATCCCCCAAGTACATGGCA] [+] EMBL CF304308 [ GAAGATGCTCAAGGAGGCTGACCTCGGAGCTGCCTTGCCGCCCCCGCCGCCGGCGGCGGCGGCACAGCCGGCGGTCGCCCCCCTCCCTGGACCATCTGGTGCGACACATCCTACAGAAAATGACTGCGCACAATCAAATCTGTTCAATTCAGTTATTGAGAAAATTGAGCGCCTTTACATGGGCAAAAATAGTAGTGATGAGGAAGACTTGGATGATGCGCCTGATGATGATCAGTATGACACAGAAGATTCGTTTATTGATGATGATGAATTGGATGAATATTTTGAAGTTGACAATTTTGCAACCAAGCACAATGGTTATTTTGTGAACAAAGGAAAATTGGAACAAATTGACTTTGATTCAGTACAGACTGTTGAACCAAAGAAACGAAGACGAAAAGACTCATCAAGTTCTTATATTGAGAATAACAAGGAATTTTCTCCAGGCTCTTCCTCATACATGGGCACGCCTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGGAAGAGTACTAGTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7315#0 CAAAGAAACGAAGACGAAAAGACTCATCAGGGTCTTATGTTGAGAATAACAAGGAATTTT 60 consensus_7315#1 ------GTCGTGGACGAAGATGCTCAA-GGAGGCTGGCCTCGGAGCTGCCTTGCCGCCCC 53 ** ****** * **** * * ** * * * * * consensus_7315#0 CTC---CAGGGTCTTCCGCATAC---ATGGGCACGCCGTTTAAGAGACTCTAAAAGAAGC 114 consensus_7315#1 CGCTGCCGGCGGCGGCGGCACAGCCGGCGGTCGCCCCCCTCCCTGGACCATCTGGTGCG- 112 * * * * * * * *** * ** * * ** * *** * * consensus_7315#0 ACTCTCCAAACGGGAGAAGAGTACTAGTAATGGTCACAAATC--TGGAGCTAATGGAACA 172 consensus_7315#1 ACACATCCTACAGAAAATGACTGCGCACAATCAAATCGGTTCAATTCAGTTATTGAGAAA 172 ** * * ** * * * ** * * *** * ** * ** ** ** * * consensus_7315#0 TTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCC-TCCA 231 consensus_7315#1 ATTGAGCGCCTTTACATGG---GCAAAAATAGTAGTGATGAGGAAGACTTGGATGATGCG 229 ***** ** *** * * * * * ** * * * * * * * * consensus_7315#0 ACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGA 291 consensus_7315#1 CCTGATGATGATCAGTATGACACAGAAGATTCGTTTATTGATGATGATGAATTG-GATGA 288 * ** ** * ** *** *** * * ** *** * * ** consensus_7315#0 GAAATATAATGCTGGTCAATTTTCTGGGTTGCATGCTTCCAGTAACATCTATTCAACAGA 351 consensus_7315#1 ATATTTTGAAGTTGA-CAATTTT-------GCAACCAAGCA-CAATGGTTATTTTGTGAA 339 * * * * * ** ******* *** * ** ** **** * consensus_7315#0 AACAATGCACTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTAC 411 consensus_7315#1 CAAAGGAAAATTGGA-ACAAATTGACTTTGATTCAGTACAGACTGTTGAACCAAAGAAAC 398 * * * **** ***** * * * ** *** ***** * ** consensus_7315#0 CAGACTTGAGCGAGCTATCCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGAT 471 consensus_7315#1 AAAGACGAAAAGATTCATC-AAGTTCTTATATTGAGAATAACAAGGAATTTGCTCCAGGC 457 * * ** *** * ** * * * ** * * *** consensus_7315#0 TCTTGAT-GTACATGAGGCTGATGCAAATTGCCAGGTAGCAGTTAAAAGAAGATTGCCAC 530 consensus_7315#1 TCTTCCTCATACATGGG-------CACGCCTTTAAG-AGACTCTAAAAGAAGCACTCTCC 509 **** * ****** * ** * * ** ********* * * consensus_7315#0 AAGAAGTAAAACAAAAACTTGCTAAGGTCGCAAGGCTATCGGCAAATCAAGGAAAAATAC 590 consensus_7315#1 AAACGGGGAAG--AGTACTATTAATGGTCACAAATCTG-----GAGCTAATGGAACATTT 562 ** * ** * *** * **** *** ** * ** * ** ** consensus_7315#0 CAGAACATGAGCTGATCA-ATCGCCTCATGGGCATAGTTGGCCACCTTGTGCACCGTAGG 649 consensus_7315#1 GAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCA---- 618 ** ** * * ** * ** ** ** ** ** **** * ** consensus_7315#0 ACACTGAAGAGAAACATGAAAGAAATGGTGCAATCAGGTTTATGTGCTAAACAAGAGAAG 709 consensus_7315#1 --ACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAA 676 ** *** * ** ** * * *** * * * ** * ** consensus_7315#0 GCTGGGAAATTGCAACAAGTGAAAATGGAAATCTATGNNNTGGTCAANNNACGTCTAGCC 769 consensus_7315#1 G--AGAAATATAATGCTGGTCAATTTTCTGGTTTGCATGCT--TCCAGTAACATCTATTC 732 * * ** * * ** ** * * * * ** * ** **** * consensus_7315#0 ACCAAACCTAAGGGTGCTGAACATA-AGGTTGAATCTATNNNTGGCTTNCANGATCCTGT 828 consensus_7315#1 AACAGAAACAATGGTAAGAATCAAGGAAACTGGTATTGTGACTTGTGAGCATGGTGCAAA 792 * ** * ** *** * ** * ** * * * * ** * * * consensus_7315#0 NANNNANNNTGNNNNNATGGCCTNGNNNNNNAAATCTGT 867 consensus_7315#1 CCATAGTTATCTTTTCATCCCCCAAGTACATGGCA---- 827 * ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||