These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 849 fasta sequence [GTCCATGCTGGAAAAAGCCAAGCTAAGACTAGCCGAACGCCGTGATCGCAAAGAGATTAAGGCCACAATCCAAGCTAATCGGCAGCTTGTGCATGAAGAAAAAACCAAACTTGATCAGCTATCTGAAGGTCCGATCAAATCCAATATTGACCGGCTCGAAGCTCGCAAAATTGAGCTCTTGGCGCAACTTGAGGAATGCAATGCCGAGCTAGATATAGAACACAAAAAGCTAGCCGATCTCCCAAAATCAATTGAAGAACAAAAAGCAAGGCTCAAATCGGCTATCAAGAATGTTGCTGACTTAACCAAGTCTCTGAAAGTCATCTCTGGAACTGATACTCAAGATGCCCAAGCTATTGAAGAAGTAGAACAAATCAGGCAAAGGGCTATTTTGGCTATCCAGCGATACTTGTCTCAATAACTTTGTGTAATAGGACTCAGAAATTTTTTTGTAATCAGCTAAGATGCTCTAGTACTTTACTGTCTTGACAATCCTTTGTGCCGATTAATATGACTTTTAAAATTCGCTAAAAAAATTTGCCTCAAAAAATTTGCATTGCATTTTGATATATAGGTGCCCCCCTAATTTTACAATGACAAAAGCATTGATAAAATTATAAAACAACTAAGGGCGATATAACAATATCGGCCATTGTACATCGGCAAATCACAACCGATTATATCATGAAAAACAACTAAGGGCGATATAACAATATCGGCCATCTCAAGGTGATGCAAACACATCGGCTGTCATGCATCAGCAATACTAGCCGATCATGCGTTAACCCAAACACTTGGGTAATATTTCTTCAAATACTTGCCATTGAGTGCTCGCCCATAGACTTCACT] [+] EMBL CB633027 [GTCCATGCTGGAAAAAGCCAAGCTAAGACTAGCCGAACGCCGTGATCGCAAAGAGATTAAGGCCACAATCCAAGCTAATCGGCAGCTTGTGCATGAAGAAAAAACCAAACTTGATCAGCTATCTGAAGGTCCGATCAAATCCAATATTGACCGGCTCGAAGCTCGCAAAATTGAGCTCTTGGCGCAACTTGAGGAATGCAATGCCGAGCTAGATATAGAACACAAAAAGCTAGCCGATCTCCCAAAATCAATTGAAGAACAAAAAGCAAGGCTCAAATCGGCTATCAAGAATGTTGCTGACTTAACCAAGTCTCTGAAAGTCATCTCTGGAACTGATACTCAAGATGCCCAAGCTATTGAAGAAGTAGAACAAATCAGGCAAAGGGCTATTTTGGCTATCCAGCGATACTTGTCTCAATAACTTTGTGTAATAGGACTCAGAAATTTTTTTGTAATCAGCTAAGATGCTCTAGTACTTTACTGTCTTGACAATCCTTTGTGCCGATTAATATGACTTTTAAAATTCGCTAAAAAAATTTGCCTCAAAAAATTTGCATTGCATTTTGATATATAGGTGCCCCCCTAATTTTACAATGACAAAAGCATTGATAAAATTATAAAACAACTAAGGGCGATATAACAATATCGGCCATTGTACATCGGCAAATCACAACCGATTATATCATGAAAAACAACTAAGGGCGATATAACAATATCGGCCATCTCAAGGTGATGCAAACACATCGGCTGTCATGCATCAGCAATACTAGCCGATCATGCGTTAACCCAAACACTTGGGTAATATTTCTTCAAATACTTGCCATTGAGTGCTCGCCCATAGACTTCACT] consensusID : consensus_732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [AGAGGACCACAAGGGGGACTAGCCGAATGCCGTGAGCGCAAAGAGATTGAGGCCCCAATTCAAGCTAATCAGCAGCTTGTGCATGAAGAGAAGACCAAACTTGATCAGCTATTTAAAGGTCCGATCAAATCCAATATTGATCGGCTCGAAGCTCACAAGAATGAGCTCTTGGCGCAACTTGAAGAATTCAATGCCGAGCTAGATATGGAACCCAAAAAGCTAGCCGATCTCCCAAAATCAATTGAAGAACAAAGGGCAAGGCTCCAATTGGCTATCAAAAATGTTGCTGACTTAACCAAGTCCCTGAAAGTCATCTCTGGAACTGATGCCCAAGATGCCCAAGCTATTGAAGAAGTAGAACAAATTAGGCAAAAGGCTATTTTGGCTATCCAGCGATACTTGTTTCAATAACTTTTATGTGATAGGGCTTAGAAATCTTTGTAATTGGCTAAGATACTCTAGTACTTTACTGTCTTGACAGTCCTTTGTGCCGATTAATATGTGATGTGGCCATGGCTATTTCGGAAAAAAAAAAAAAAAAAA] [-] EMBL CA762742 [AGAGGACCACAAGGGGGACTAGCCGAATGCCGTGAGCGCAAAGAGATTGAGGCCCCAATTCAAGCTAATCAGCAGCTTGTGCATGAAGAGAAGACCAAACTTGATCAGCTATTTAAAGGTCCGATCAAATCCAATATTGATCGGCTCGAAGCTCACAAGAATGAGCTCTTGGCGCAACTTGAAGAATTCAATGCCGAGCTAGATATGGAACCCAAAAAGCTAGCCGATCTCCCAAAATCAATTGAAGAACAAAGGGCAAGGCTCCAATTGGCTATCAAAAATGTTGCTGACTTAACCAAGTCCCTGAAAGTCATCTCTGGAACTGATGCCCAAGATGCCCAAGCTATTGAAGAAGTAGAACAAATTAGGCAAAAGGCTATTTTGGCTATCCAGCGATACTTGTTTCAATAACTTTTATGTGATAGGGCTTAGAAATCTTTGTAATTGGCTAAGATACTCTAGTACTTTACTGTCTTGACAGTCCTTTGTGCCGATTAATATGTGATGTGGCCATGGCTATTTCGGAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_732#0 GTCCATGCTGGAAAAAGCCA-AGCTAAGACTAGCCGAACGCCGTGATCGCAAAGAGATTA 59 consensus_732#1 -----------AGAGGACCACAAGGGGGACTAGCCGAATGCCGTGAGCGCAAAGAGATTG 49 * * *** * *********** ******* ************ consensus_732#0 AGGCCACAATCCAAGCTAATCGGCAGCTTGTGCATGAAGAAAAAACCAAACTTGATCAGC 119 consensus_732#1 AGGCCCCAATTCAAGCTAATCAGCAGCTTGTGCATGAAGAGAAGACCAAACTTGATCAGC 109 ***** **** ********** ****************** ** **************** consensus_732#0 TATCTGAAGGTCCGATCAAATCCAATATTGACCGGCTCGAAGCTCGCAAAATTGAGCTCT 179 consensus_732#1 TATTTAAAGGTCCGATCAAATCCAATATTGATCGGCTCGAAGCTCACAAGAATGAGCTCT 169 *** * ************************* ************* *** * ******** consensus_732#0 TGGCGCAACTTGAGGAATGCAATGCCGAGCTAGATATAGAACACAAAAAGCTAGCCGATC 239 consensus_732#1 TGGCGCAACTTGAAGAATTCAATGCCGAGCTAGATATGGAACCCAAAAAGCTAGCCGATC 229 ************* **** ****************** **** ***************** consensus_732#0 TCCCAAAATCAATTGAAGAACAAAAAGCAAGGCTCAAATCGGCTATCAAGAATGTTGCTG 299 consensus_732#1 TCCCAAAATCAATTGAAGAACAAAGGGCAAGGCTCCAATTGGCTATCAAAAATGTTGCTG 289 ************************ ********* *** ********* ********** consensus_732#0 ACTTAACCAAGTCTCTGAAAGTCATCTCTGGAACTGATACTCAAGATGCCCAAGCTATTG 359 consensus_732#1 ACTTAACCAAGTCCCTGAAAGTCATCTCTGGAACTGATGCCCAAGATGCCCAAGCTATTG 349 ************* ************************ * ******************* consensus_732#0 AAGAAGTAGAACAAATCAGGCAAAGGGCTATTTTGGCTATCCAGCGATACTTGTCTCAAT 419 consensus_732#1 AAGAAGTAGAACAAATTAGGCAAAAGGCTATTTTGGCTATCCAGCGATACTTGTTTCAAT 409 **************** ******* ***************************** ***** consensus_732#0 AACTTT-GTGTAATAGGACTCAGAAATTTTTTTGTAATCAGCTAAGATGCTCTAGTACTT 478 consensus_732#1 AACTTTTATGTGATAGGGCTTAGAAATCTT--TGTAATTGGCTAAGATACTCTAGTACTT 467 ****** *** ***** ** ****** ** ****** ******** *********** consensus_732#0 TACTGTCTTGACAATCCTTTGTGCCGATTAATATGACTTTTAAAATTCGCTA----AAAA 534 consensus_732#1 TACTGTCTTGACAGTCCTTTGTGCCGATTAATATGTGATGTGGCCATGGCTATTTCGGAA 527 ************* ********************* * * * **** ** consensus_732#0 AATTTGCCTCAAAAAATTTGCATTGCATTTTGATATATAGGTGCCCCCCTAATTTTACAA 594 consensus_732#1 AAAAAAAAAAAAAAAA-------------------------------------------- 543 ** ****** consensus_732#0 TGACAAAAGCATTGATAAAATTATAAAACAACTAAGGGCGATATAACAATATCGGCCATT 654 consensus_732#1 ------------------------------------------------------------ consensus_732#0 GTACATCGGCAAATCACAACCGATTATATCATGAAAAACAACTAAGGGCGATATAACAAT 714 consensus_732#1 ------------------------------------------------------------ consensus_732#0 ATCGGCCATCTCAAGGTGATGCAAACACATCGGCTGTCATGCATCAGCAATACTAGCCGA 774 consensus_732#1 ------------------------------------------------------------ consensus_732#0 TCATGCGTTAACCCAAACACTTGGGTAATATTTCTTCAAATACTTGCCATTGAGTGCTCG 834 consensus_732#1 ------------------------------------------------------------ consensus_732#0 CCCATAGACTTCACT 849 consensus_732#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||