cluster # 7331

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Oryza sativa
cluster # 7331 cluster # 7331 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7331#0 length = 546 sequences # 1

consensus_7331#1 length = 509 sequences # 3

consensusID : consensus_7331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [TGAAGGAGTAGAAAAAAAATCTCCCCCAACTCTCTACGCAATTCCACTCTCCAAAACCACCCATCAACAAAACCAAATCCAAGAATCGATCCAGCGATCGATGGAGTCGTCGTCGTCGGTCATCTTCCTGGGCACCGGCTGCTCCGGCGCGCTCCCCGACGCCCGGTGCCTCATTCACCCGTCCACGCCGCCGTGCCCCGTCTGCTCCTACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAA]

[+] EMBL CF308119             [TGAAGGAGTAGAAAAAAAATCTCCCCCAACTCTCTACGCAATTCCACTCTCCAAAACCACCCATCAACAAAACCAAATCCAAGAATCGATCCAGCGATCGATGGAGTCGTCGTCGTCGGTCATCTTCCTGGGCACCGGCTGCTCCGGCGCGCTCCCCGACGCCCGGTGCCTCATTCACCCGTCCACGCCGCCGTGCCCCGTCTGCTCCTACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAA]




>consensus_7331#0
TGAAGGAGTAGAAAAAAAATCTCCCCCAACTCTCTACGCAATTCCACTCTCCAAAACCAC
CCATCAACAAAACCAAATCCAAGAATCGATCCAGCGATCGATGGAGTCGTCGTCGTCGGT
CATCTTCCTGGGCACCGGCTGCTCCGGCGCGCTCCCCGACGCCCGGTGCCTCATTCACCC
GTCCACGCCGCCGTGCCCCGTCTGCTCCTACTCCCTCTCCCTCCCGCCGGAGCGAAACCC
CAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAA
GTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCA
CCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTT
AGGTCTTGATGATGTTTGGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGT
TCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATT
GAAAAA

consensusID : consensus_7331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 509
fasta sequence

                              [CTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGNGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGGACGATAATTGAGGGTGACATCGACAAACCATTTGT]

[+] EMBL CF323343             [CTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGNGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGGACGATAATTGAGGGTGACATCGACAAACCATTTGT]
[+] EMBL CF324579             [CTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTG GGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGG                                   ]
[+] EMBL CA998938             [                                                                                                    CCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCG                                                                                                                                                                                                                              ]




>consensus_7331#1
CTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACT
TTGAAAAGAGAGTCAAAGAGTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCA
ATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGT
ACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACC
ACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAG
GTCTTGATGATGTTTGNGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTT
CCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTG
AAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGGACGATA
ATTGAGGGTGACATCGACAAACCATTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7331#0      TGAAGGAGTAGAAAAAAAATCTCCCCCAACTCTCTACGCAATTCCACTCTCCAAAACCAC 60
consensus_7331#1      ------------------------------------------------------------
                                                                                  

consensus_7331#0      CCATCAACAAAACCAAATCCAAGAATCGATCCAGCGATCGATGGAGTCGTCGTCGTCGGT 120
consensus_7331#1      -------------------------------------------------------CTAAA 5
                                                                                  

consensus_7331#0      CATCTTCCTGGGCACCGGCTGCTCCGGCGCGCTCCCCGACGCCCGGTGCCTCATTCACCC 180
consensus_7331#1      TA-CAGGCGAGAGACCGATAGC--GAACAAGTACCGCGAGG---GAAAGATGAAAAGGAC 59
                       * *   *  *  ****   **     *  *  ** *** *   *     * *      *

consensus_7331#0      GTCCACGCCGCCGTGCCCCGTCTGCTCCTACTCCCTCTCCCTCCCGCCGGAGCGAAACCC 240
consensus_7331#1      TTTGAAAAGAGAGT-CAAAGAGTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCC 118
                       *  *       ** *   *  ****** *******************************

consensus_7331#0      CAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAA 300
consensus_7331#1      CAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAA 178
                      ************************************************************

consensus_7331#0      GTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCA 360
consensus_7331#1      GTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCA 238
                      ************************************************************

consensus_7331#0      CCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTT 420
consensus_7331#1      CCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTT 298
                      ************************************************************

consensus_7331#0      AGGTCTTGATGATGTTTGGG-TGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAG 479
consensus_7331#1      AGGTCTTGATGATGTTTGNGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAG 358
                      ****************** * ***************************************

consensus_7331#0      TTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTAT 539
consensus_7331#1      TTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTAT 418
                      ************************************************************

consensus_7331#0      TGAAAAA----------------------------------------------------- 546
consensus_7331#1      TGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGGACGA 478
                      *******                                                     

consensus_7331#0      -------------------------------
consensus_7331#1      TAATTGAGGGTGACATCGACAAACCATTTGT 509