These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7331#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [TGAAGGAGTAGAAAAAAAATCTCCCCCAACTCTCTACGCAATTCCACTCTCCAAAACCACCCATCAACAAAACCAAATCCAAGAATCGATCCAGCGATCGATGGAGTCGTCGTCGTCGGTCATCTTCCTGGGCACCGGCTGCTCCGGCGCGCTCCCCGACGCCCGGTGCCTCATTCACCCGTCCACGCCGCCGTGCCCCGTCTGCTCCTACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAA] [+] EMBL CF308119 [TGAAGGAGTAGAAAAAAAATCTCCCCCAACTCTCTACGCAATTCCACTCTCCAAAACCACCCATCAACAAAACCAAATCCAAGAATCGATCCAGCGATCGATGGAGTCGTCGTCGTCGGTCATCTTCCTGGGCACCGGCTGCTCCGGCGCGCTCCCCGACGCCCGGTGCCTCATTCACCCGTCCACGCCGCCGTGCCCCGTCTGCTCCTACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAA] consensusID : consensus_7331#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 509 fasta sequence [CTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGNGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGGACGATAATTGAGGGTGACATCGACAAACCATTTGT] [+] EMBL CF323343 [CTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTGNGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGGACGATAATTGAGGGTGACATCGACAAACCATTTGT] [+] EMBL CF324579 [CTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTTAGGTCTTGATGATGTTTG GGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAGTTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTATTGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGG ] [+] EMBL CA998938 [ CCCGCCGGAGCGAAACCCCAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAAGTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCACCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7331#0 TGAAGGAGTAGAAAAAAAATCTCCCCCAACTCTCTACGCAATTCCACTCTCCAAAACCAC 60 consensus_7331#1 ------------------------------------------------------------ consensus_7331#0 CCATCAACAAAACCAAATCCAAGAATCGATCCAGCGATCGATGGAGTCGTCGTCGTCGGT 120 consensus_7331#1 -------------------------------------------------------CTAAA 5 consensus_7331#0 CATCTTCCTGGGCACCGGCTGCTCCGGCGCGCTCCCCGACGCCCGGTGCCTCATTCACCC 180 consensus_7331#1 TA-CAGGCGAGAGACCGATAGC--GAACAAGTACCGCGAGG---GAAAGATGAAAAGGAC 59 * * * * **** ** * * ** *** * * * * * consensus_7331#0 GTCCACGCCGCCGTGCCCCGTCTGCTCCTACTCCCTCTCCCTCCCGCCGGAGCGAAACCC 240 consensus_7331#1 TTTGAAAAGAGAGT-CAAAGAGTGCTCCCACTCCCTCTCCCTCCCGCCGGAGCGAAACCC 118 * * ** * * ****** ******************************* consensus_7331#0 CAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAA 300 consensus_7331#1 CAATTACAGGTGTAACACCTCCCTCTTGATAGATTACTGCCAACATGATGGAATCCATAA 178 ************************************************************ consensus_7331#0 GTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCA 360 consensus_7331#1 GTACATTCTAATCGATGTCGGCAAGACATTTAGAGAACAAGTTCTTCGGTGGTTTTCTCA 238 ************************************************************ consensus_7331#0 CCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTT 420 consensus_7331#1 CCACAAGATTCCTTATGTTGATTCGATTATTCTCACTCATGAACACGCGGATGCTGTCTT 298 ************************************************************ consensus_7331#0 AGGTCTTGATGATGTTTGGG-TGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAG 479 consensus_7331#1 AGGTCTTGATGATGTTTGNGGTGGTACAACCAAGTGGTTGTAGAAATGGCTTGGGCAAAG 358 ****************** * *************************************** consensus_7331#0 TTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTAT 539 consensus_7331#1 TTCCTATTTTTCTCACCCATTTCACAATGAACAGTGTTGCAGCAAGATTCCCCTATTTAT 418 ************************************************************ consensus_7331#0 TGAAAAA----------------------------------------------------- 546 consensus_7331#1 TGAAAAATAAGCTGGAGGAAGGTGATGAAGGTTCCCAAGTCATTCAACTCGACTGGACGA 478 ******* consensus_7331#0 ------------------------------- consensus_7331#1 TAATTGAGGGTGACATCGACAAACCATTTGT 509 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||