These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1858 fasta sequence [CCGCCCTCGTCCTTGTCTCCGAATAATCATGTGAAGATTGCTGTTGTTGCCGATCCACAGCTTATGGACAGCACCTCCCTTGGCCTTCCACCGAGCTCAATTGCGCTGCAAGCTGCTGAGTTCTACACGGATTTGAACATGAGAAGGTCCTTTCAGTCTGTTGTACTTCCATTCAAGCCAGACATGCTATTATTTCTTGGTGATCACTTTGATGGGGGCCCATATATGTCCAATGAAGAGTGGCATGAATCGTTGTCTCGCTTTAAGCATATATTCAGCATGAATGAACATATAACAAATCCAAACATCCCAATCTACTACCTTTCAGGAAATCATGATATTGGCTACTCAGCATTTCACAAAATTCATCCTGAGGTGATTTCTCGGTATGAAAAAGAATTTGGATCAAGAAATTACCAATTTTTGGCTGGGAAGGTGGATTTTGTTGTTGTTGATGCCCAAACTCTTGATGGAGCTAAAGAAAGCAAAGAAAGATCCTCCTCTTGGGAGTTCATCAAAGCATTGTCACCTGGTAACAAAACAAACCCAAAGGTTCTACTAACACATATTCCACTCTACCGACCTGACAATTCTCCTTGCGGTCCACATCGTTCTTCACCTGTTATCAATCAGAGGGTATCTAATGCAGCCATGGATCAAGGGATAACCTACCAGAATTATCTGAGCAAAGAGACTTCTGACCTCTTGCTACACTTGTTGAAGCCTGTTCTTGTTCTCTCAGGCCATGATCATGACCAGTGTACAGTAGTTCATCCCACTCCTTTTGGACCAGTAACGGAGCATACCCTTGGTACAATAAGTTGGCAACAGGGGAATCTCTATCCATCTTTTATGCTTCTATCTGCTGGGCCCAAGCTGCCAGCAAATTCTACTGATATAGAACATGAGGTTCTGACGAATCTTTGTTTTCTGCCTAAACAAACTCATATCTATATATGGTATATCTTCCAGTTTGTGGTGACGCTTCTTCTGCTTATCTTGTGGCCAACAAATGGTCTCAGATCTCTTCCGTACGTGAACTCATTTGTAAGCTTCATGCGGTCAGTGGCTGCTGAATTGTTTTCAAGAACGAAAGAAAAAGATGACGAGGAAGATGGTGAATATGAAATGGTCTGGGATGCAGAGGGATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGCTCAGACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAACCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGAGGAAAGGTGCCTCGCTCAAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGTGTCATTCAGTCAATTGTTGTCATTGCCGCATTGAATGTCCCTCTATACATGATGTTTCTGTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAAGGGATACAACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCTTTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAACGTTCAGTGGCCCGTTC--TTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCATACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGTATCTCCACCTGACCTGACACATGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATATTCCAACAATCTTTTTATGTTCTTCTAAAAGTCCATCAGATATTATTAATTACATGACAAA] [+] EMBL AK071357 [CCGCCCTCGTCCTTGTCTCCGAATAATCATGTGAAGATTGCTGTTGTTGCCGATCCACAGCTTATGGACAGCACCTCCCTTGGCCTTCCACCGAGCTCAATTGCGCTGCAAGCTGCTGAGTTCTACACGGATTTGAACATGAGAAGGTCCTTTCAGTCTGTTGTACTTCCATTCAAGCCAGACATGCTATTATTTCTTGGTGATCACTTTGATGGGGGCCCATATATGTCCAATGAAGAGTGGCATGAATCGTTGTCTCGCTTTAAGCATATATTCAGCATGAATGAACATATAACAAATCCAAACATCCCAATCTACTACCTTTCAGGAAATCATGATATTGGCTACTCAGCATTTCACAAAATTCATCCTGAGGTGATTTCTCGGTATGAAAAAGAATTTGGATCAAGAAATTACCAATTTTTGGCTGGGAAGGTGGATTTTGTTGTTGTTGATGCCCAAACTCTTGATGGAGCTAAAGAAAGCAAAGAAAGATCCTCCTCTTGGGAGTTCATCAAAGCATTGTCACCTGGTAACAAAACAAACCCAAAGGTTCTACTAACACATATTCCACTCTACCGACCTGACAATTCTCCTTGCGGTCCACATCGTTCTTCACCTGTTATCAATCAGAGGGTATCTAATGCAGCCATGGATCAAGGGATAACCTACCAGAATTATCTGAGCAAAGAGACTTCTGACCTCTTGCTACACTTGTTGAAGCCTGTTCTTGTTCTCTCAGGCCATGATCATGACCAGTGTACAGTAGTTCATCCCACTCCTTTTGGACCAGTAACGGAGCATACCCTTGGTACAATAAGTTGGCAACAGGGGAATCTCTATCCATCTTTTATGCTTCTATCTGCTGGGCCCAAGCTGCCAGCAAATTCTACTGATATAGAACATGAGGTTCTGACGAATCTTTGTTTTCTGCCTAAACAAACTCATATCTATATATGGTATATCTTCCAGTTTGTGGTGACGCTTCTTCTGCTTATCTTGTGGCCAACAAATGGTCTCAGATCTCTTCCGTACGTGAACTCATTTGTAAGCTTCATGCGGTCAGTGGCTGCTGAATTGTTTTCAAGAACGAAAGAAAAAGATGACGAGGAAGATGGTGAATATGAAATGGTCTGGGATGCAGAGGGATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGCTCAGACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAACCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGAGGAAAGGTGCCTCGCTCGAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGTGTCATTCAGTCAATTGTTGTCATTGCCGCATTGAATGTCCCTCTATACATGATGCTTCTGTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAAGGGATACAACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCTTTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAACGTTCAGTGGCCCGTTCTTTTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCATACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGTATCTCCACCTGACCTGACACACGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATATTCCAACAATCTTTTTATGTTCTTCTAAAAGTCCACCAGATATTAT ] [-] EMBL CB632177 [ GAACGAAAGAAAAAGATGACGAGGAAGATGGTGAATATGAAATGGTCTGGGATGCAGAGGGATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGCTCAGACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAACCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGAGGAAAGGTGCCTCGCTCAAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGTGTCATTCAGTCAATTGTTGTCATTGCCGCATTGAATGTCCCTCTATACATGATGTTTCTGTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAAGGGATACAACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCTTTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAACGTTCAGTGGCCCGTTC TTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCATACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGTATCTCCACCTGACCTGACACATGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATATTCCAACAATCTTTTTAGGTTCTTCTAAAAGTCCATCAGATATTATTAATT ] [-] EMBL CB631965 [ GATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGTTCAGACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAACCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGAGGAAAGGTGCCTCGCTCAAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGTGTCATTCAGTCAATTGTTGTCATTGCCGCATTGAATGTCCCTCTATACATGATGTTTCTGTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAAGGGATACAACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCTTTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAACGTTCAGTGGCCCGTTC TTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCATACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGTATCTCCACCTGACCTGACACATGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATATTCCAACAATCTTTTTATGTTCTTCTAAAAGTCCATCAGATATTATTAATTACATGACAAA] consensusID : consensus_7337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [AGCACGTGTTCGAGTCGAGCCCGAACGAACCGACCGGACCGGGGGTTTCGTTGGCAGATCTCGCCGGCCGCCGCCGCCGCCGCCGCCGCGAGCAGTTCGGCCGGCCAGCCAGCCACATCGGCGGAGTGAGTGTGTGTGTGTGTGGGGGAAATTTGTACCATGAAGCATATGTCTATGCCGATGAGACCAGAACGGGCCACTGAACGTTGATGCACAACACGATCATCCCTGGTTGAACTGGTAAATCAT] [+] EMBL CB632176 [AGCACGTGTTCGAGTCGAGCCCGAACGAACCGACCGGACCGGGGGTTTCGTTGGCAGATCTCGCCGGCCGCCGCCGCCGCCGCCGCCGCGAGCAGTTCGGCCGGCCAGCCAGCCACATCGGCGGAGTGAGTGTGTGTGTGTGTGGGGGAAATTTGTACCATGAAGCATATGTCTATGCCGATGAGACCAGAACGGGCCACTGAACGTTGATGCACAACACGATCATCCCTGGTTGAACTGGTAAATCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7337#0 CCGCCCTCGTCCTTGTCTCCGAATAATCATGTGAAGATTGCTGTTGTTGCCGATCCACAG 60 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 CTTATGGACAGCACCTCCCTTGGCCTTCCACCGAGCTCAATTGCGCTGCAAGCTGCTGAG 120 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 TTCTACACGGATTTGAACATGAGAAGGTCCTTTCAGTCTGTTGTACTTCCATTCAAGCCA 180 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 GACATGCTATTATTTCTTGGTGATCACTTTGATGGGGGCCCATATATGTCCAATGAAGAG 240 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 TGGCATGAATCGTTGTCTCGCTTTAAGCATATATTCAGCATGAATGAACATATAACAAAT 300 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 CCAAACATCCCAATCTACTACCTTTCAGGAAATCATGATATTGGCTACTCAGCATTTCAC 360 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 AAAATTCATCCTGAGGTGATTTCTCGGTATGAAAAAGAATTTGGATCAAGAAATTACCAA 420 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 TTTTTGGCTGGGAAGGTGGATTTTGTTGTTGTTGATGCCCAAACTCTTGATGGAGCTAAA 480 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 GAAAGCAAAGAAAGATCCTCCTCTTGGGAGTTCATCAAAGCATTGTCACCTGGTAACAAA 540 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 ACAAACCCAAAGGTTCTACTAACACATATTCCACTCTACCGACCTGACAATTCTCCTTGC 600 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 GGTCCACATCGTTCTTCACCTGTTATCAATCAGAGGGTATCTAATGCAGCCATGGATCAA 660 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 GGGATAACCTACCAGAATTATCTGAGCAAAGAGACTTCTGACCTCTTGCTACACTTGTTG 720 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 AAGCCTGTTCTTGTTCTCTCAGGCCATGATCATGACCAGTGTACAGTAGTTCATCCCACT 780 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 CCTTTTGGACCAGTAACGGAGCATACCCTTGGTACAATAAGTTGGCAACAGGGGAATCTC 840 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 TATCCATCTTTTATGCTTCTATCTGCTGGGCCCAAGCTGCCAGCAAATTCTACTGATATA 900 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 GAACATGAGGTTCTGACGAATCTTTGTTTTCTGCCTAAACAAACTCATATCTATATATGG 960 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 TATATCTTCCAGTTTGTGGTGACGCTTCTTCTGCTTATCTTGTGGCCAACAAATGGTCTC 1020 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 AGATCTCTTCCGTACGTGAACTCATTTGTAAGCTTCATGCGGTCAGTGGCTGCTGAATTG 1080 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 TTTTCAAGAACGAAAGAAAAAGATGACGAGGAAGATGGTGAATATGAAATGGTCTGGGAT 1140 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 GCAGAGGGATCCATGCACCTGGTTAAAAAGGCCGTGGCAAGAACCCCCAGCACTAGCTCA 1200 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 GACTCAAGAACTACAGGACGGGGAAATGTTGTTGCAAGGCCAACAGCCAGAAAGAATCAA 1260 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 CCGGAGCCTGATTCATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGA 1320 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 GGAAAGGTGCCTCGCTCAAGCAAATTGAAAATAAGGAGGGTGCTTCAGAGGCTGTTTCGT 1380 consensus_7337#1 -----AGCACGT-GTTCGAGTCGAGCCCGAACGAACCGACCGGACCGGGGGTTTCGTTGG 54 * * * * ** ** * ** * * * * * ** * * * consensus_7337#0 GTCATTCAGTCAATTGTTGTCATTGCCGC-ATTGAATGTCCCTCTATACATGATGTTTCT 1439 consensus_7337#1 CAGATCTCGCCGGCCGCCGCCGCCGCCGCCGCCGCGAGCAGTTCGGC---CGGCCAGCCA 111 ** * * * * * ***** * * ** * * consensus_7337#0 GTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAA 1499 consensus_7337#1 GCCACATCGGCGGAGTGAGTGTGTGTGTGTGTGGGGGAAATTTGTACCATGAAGCATATG 171 * * *** ** ** * *** * * * ** * ** * ** consensus_7337#0 GGGATAC-AACTATAGGAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCT 1558 consensus_7337#1 TCTATGCCGATGAGACCAGAACGGGCCACTG-AACGTTGA-TGCACAACACGATCAT-CC 228 ** * * * * ** ** ** * ** ** ** ** * ** *** * * consensus_7337#0 TTGGTTGACACAGAAAAATGATTTACCAGTTCAACCAGGGTGATCGTGTTGTGCATCAAC 1618 consensus_7337#1 CTGGTTGA-ACTGGTAAATCAT-------------------------------------- 249 ******* ** * **** ** consensus_7337#0 GTTCAGTGGCCCGTTCTTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAATGTTCAT 1678 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 ACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGT 1738 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 ATCTCCACCTGACCTGACACATGTAATGCGGCATATAGGAGAGGGCATTGTACTGTATAT 1798 consensus_7337#1 ------------------------------------------------------------ consensus_7337#0 TCCAACAATCTTTTTATGTTCTTCTAAAAGTCCATCAGATATTATTAATTACATGACAAA 1858 consensus_7337#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||