These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 913 fasta sequence [ACTCACTAAAAATTAGATAAAGCGATCGGATTGCATGATCTTTATACAATATCGCTCATAAGAAATGCCTCTACGAGAAGCGACATCACGGCCACATCAGCCACGCAGCCAAGGTGACCAAAGAATGTAGTTGTCTCCCTGTAACCCCTAACCCTTTCACTATACACAGAAGAAAAACAATGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAAATCTTAAAAATTTACGAAGAATCAAACGATCCACAAATAAAACCTTGTGGTCGTGACTAAAAACAGAGAAGGAATAACAAGAGCCAGCCAATCACTTGGGCAACAGCCATTCTGTGTAGAACAGTTCTGCAGTTCTGTAATGAGGCAAAAATACCACAATCGTTACATCTTTTAATCACACGTATTGTCTATATAATAAAAAAAATATAGTTACAGAATTACAAATCGTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTTGCGGGCACGAATTAGTGGTGGTAGCAAATGAAGGTTGTGTATATGAACCTCGTAGCAGTCCAATTGCAATGGCCTTGTATGCAGCTTCTGATGGATGGAAGCCATCCCATGACCCAAACTTTTGTGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTTGCAGTTCCAGATACACCATACGGTCCTCCTCCACCACAACAAGCTGTCAAAGGATCTTTGATTCCAAATTGTTCAGGGGAAAGGAAAACTTCCATGGCAGCTCCATAGTAATCAGCATAGATGATGGCCACATCAGGATGAAGCTTGCGTAACTTTTCCAATTCATCTATAAGAAGTTTGTTGTGGTATTGCGAGAACTCGTTCATCCACCTGAGGCAACCTGTCTCTGGCTCATAATCTTCCTTCTTAC] [+] EMBL CB659054 [ACTCACTAAAAATTAGATAAAGCGATCGGATTGCATGATCTTTATACAATATCGCTCATAAGAAATGCCTCTACGAGAAGCGACATCACGGCCACATCAGCCACGCAGCCAAGGTGACCAAAGAATGTAGTTGTCTCCCTGTAACCCCTAACCCTTTCACTATACACAGAAGAAAAACAATGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAAATCTTAAAAATTTACGAAGAATCAAACGATCCACAAATAAAACCTTGTGGTCGTGACTAAAAACAGAGAAGGAATAACAAGAGCCAGCCAATCACTTGGGCAACAGCCATTCTGTGTAGAACAGTTCTGCAGTTCTGTAATGAGGCAAAAATACCACAATCGTTACATCTTTTAATCACACGTATTGTCTATATAATAAAAAAAATATAGTTACAGAATTACAAATCGTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTTGCGGGCACGAATTAGTGGTGGTAGCAAATGAAGGTTGTGTATATGAACCTCGTAGCAGTCCAATTGCAATGGCCTTGTATGCAGCTTCTGATGGATGGAAGCCATCCCATGACCCAAACTTTTGTGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTTGCAGTTCCAGATACACCATACGGTCCTCCTCCACCACAACAAGCTGTCAAAGGATCTTTGATTCCAAATTGTTCAGGGGAAAGGAAAACTTCCATGGCAGCTCCATAG ] [-] EMBL AK105142 [ TTACATCTTTTAATCACACGTATTGTCTATATAATAAAAAAAATATAGTTACAGAATTACAAATCGTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTTGCGGGCACGAATTAGTGGTGGTAGCAAATGAAGGTTGTGTATATGAACCTCGTAGCAGTCCAATTGCAATGGCCTTGTATGCAGCTTCTGATGGATGGAAGCCATCCCATGACCCAAACTTTTGTGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTTGCAGTTCCAGATACACCATACGGTCCTCCTCCACCACAACAAGCTGTCAAAGGATCTTTGATTCCAAATTGTTCAGGGGAAAGGAAAACTTCCATGGCAGCTCCATAGTAATCAGCATAGATGATGGCCACATCAGGATGAAGCTTGCGTAACTTTTCCAATTCATCTATAAGAAGTTTGTTGTGGTATTGCGAGAACTCGTTCATCCACCTGAGGCAACCTGTCTCTGGCTCATAATCTTCCTTCTTAC] consensusID : consensus_7340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [GAGAGCCATTCGTGTAGAACAGGTCTGGAGTTCTGGANGAGGGANAATACCACAATCGTTACATCTTTTAATCCCACGTATGGCTATATAATAAAAAACATATAGTTCACAGAATGGACAAATCGTTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTGGGGGCCCGAATTAGNGGGGGTAGCCAATGACGGTGGNGTATATGAACCTCGTAGCAGTCCAATGCAAGGGCCTTGTATGCAGTTCTGATGGATGGAAGCCATCCCATGACCAAACTTTGGTGGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTNGGCAGTTCCAGATACACCATAGGGTCCTCCTCCACCACAACAAGCTGTCACAAGGATC] [-] EMBL BM420470 [GAGAGCCATTCGTGTAGAACAGGTCTGGAGTTCTGGANGAGGGANAATACCACAATCGTTACATCTTTTAATCCCACGTATGGCTATATAATAAAAAACATATAGTTCACAGAATGGACAAATCGTTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTGGGGGCCCGAATTAGNGGGGGTAGCCAATGACGGTGGNGTATATGAACCTCGTAGCAGTCCAATGCAAGGGCCTTGTATGCAGTTCTGATGGATGGAAGCCATCCCATGACCAAACTTTGGTGGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTNGGCAGTTCCAGATACACCATAGGGTCCTCCTCCACCACAACAAGCTGTCACAAGGATC] consensusID : consensus_7340#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [TTTTTTTTTTCTTCCCGGTAATCCCCTAACCCTTTCANTATACACAGAAGAAAAACAAGGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAATATCTTAAACAATTTACGAAGAATCAAAGCGATCCACAAATAAAACCTGTGGTGGTCGNGA] [-] EMBL BQ907236 [TTTTTTTTTTCTTCCCGGTAATCCCCTAACCCTTTCANTATACACAGAAGAAAAACAAGGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAATATCTTAAACAATTTACGAAGAATCAAAGCGATCCACAAATAAAACCTGTGGTGGTCGNGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7340#0 ACTCACTAAAAATTAGATAAAGCGATCGGATTGCATGATCTTTATACAATATCGCTCATA 60 consensus_7340#1 ------------------------------------------------------------ consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 AGAAATGCCTCTACGAGAAGCGACATCACGGCCACATCAGCCACGCAGCCAAGGTGACCA 120 consensus_7340#1 ------------------------------------------------------------ consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 AAGAATGTAGTTGTCTCCCTGTAACCCCTAACCCTTTCACTATACACAGAAGAAAAACAA 180 consensus_7340#1 ------------------------------------------------------------ consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 TGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAAATCTTAAAAATT 240 consensus_7340#1 ------------------------------------------------------------ consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 TACGAAGAATCAAACGATCCACAAATAAAACCTTGTGGTCGTGACTAAAAACAGAGAAGG 300 consensus_7340#1 ------------------------------------------------------------ consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 AATAACAAGAGCCAGCCAATCACTTGGGCAACAGCCATTCTGTGTAGAACAGTTCTGCAG 360 consensus_7340#1 -----------------------------GAGAGCCATTC-GTGTAGAACAGGTCTGGAG 30 consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 TTCTGTAATGAGGCAAAAATACCACAATCGTTACATCTTTTAATCACACGTATTGTCTAT 420 consensus_7340#1 TTCTG-GANGAGG-GANAATACCACAATCGTTACATCTTTTAATCCCACGTAT-GGCTAT 87 consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 ATAATAAAAAAAATATAGTT-ACAGAATT-ACAAATCGT-AGAGGACCTTGTATTCAACA 477 consensus_7340#1 ATAATAAAAAACATATAGTTCACAGAATGGACAAATCGTTAGAGGACCTTGTATTCAACA 147 consensus_7340#2 ------------------------------------------TTTTTTTTTTCTTCCCGG 18 ** * *** consensus_7340#0 GAAGAACTGAGCTCAGTAATTTGCGGGCACGAATTAGTGGTGGTAGCAAATGAAGGTTGT 537 consensus_7340#1 GAAGAACTGAGCTCAGTAATT-GGGGGCCCGAATTAGNGGGGGTAGCCAATGACGGTGGN 206 consensus_7340#2 TAATCCCCTAACCCTTTCANTATACACAGAAGAAAAACAAGGGAGCTAAATTATAATAAT 78 ** * * * * * * * * * ** *** * * consensus_7340#0 G-TATATGAACCTCGTAGCAGTCCAATTGCAATGGCCTTGTATGCAGCTTCTGATGGATG 596 consensus_7340#1 G-TATATGAACCTCGTAGCAGTCCAAT-GCAAGGGCCTTGTATGCAG-TTCTGATGGATG 263 consensus_7340#2 ACTACACATACCCTATAAGA----AAT---AATAATATCTTAAACAATTTACGAAGAATC 131 ** * *** ** * *** ** * ** ** ** ** * ** consensus_7340#0 GAAGCCATCCCATGACCCAAACTTTTGTGGG-TCATCGCAAACCTTGTATTCACCATATC 655 consensus_7340#1 GAAGCCATCCCATGACC-AAACTTTGGTGGGGTCATCGCAAACCTTGTATTCACCATATC 322 consensus_7340#2 AAAGCGATCCACAAATAAAACCTGTGGTGG-----TCGNGA------------------- 167 **** **** * ** ** * **** *** * consensus_7340#0 CACATCTTG-CAGTTCCAGATACACCATACGGTCCTCCTCCACCACAACAAGCTGTCA-A 713 consensus_7340#1 CACATCTNGGCAGTTCCAGATACACCATAGGGTCCTCCTCCACCACAACAAGCTGTCACA 382 consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 AGGATCTTTGATTCCAAATTGTTCAGGGGAAAGGAAAACTTCCATGGCAGCTCCATAGTA 773 consensus_7340#1 AGGATC------------------------------------------------------ 388 consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 ATCAGCATAGATGATGGCCACATCAGGATGAAGCTTGCGTAACTTTTCCAATTCATCTAT 833 consensus_7340#1 ------------------------------------------------------------ consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 AAGAAGTTTGTTGTGGTATTGCGAGAACTCGTTCATCCACCTGAGGCAACCTGTCTCTGG 893 consensus_7340#1 ------------------------------------------------------------ consensus_7340#2 ------------------------------------------------------------ consensus_7340#0 CTCATAATCTTCCTTCTTAC 913 consensus_7340#1 -------------------- consensus_7340#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||