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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1646 fasta sequence
[GGAGAGGGAGAGGAGACAGAACGCCCTGCCCGTTTCAGACCTCGGCGCGTGCACATATATACCACCCCCTCCCGGTCTCCCATGCGCTCTCGATCACCATCTTCTGCTTCATCCATCATCCACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGCCGTGCTGCGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGCTCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCGGATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTACTCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCAAGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCAGGTGACACCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGTCGTCGGCGTCCTCCTCGACGACGACGGCGGCCAATAACAACAACAGCGGCGACACGGCCGGCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAGACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGCCAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCGGCGCCGTGTCGGACGAGCTGCTCGACCTGCCGGAGATCGACATCGAGCCGGATATATGGAGCATCATCGACGGCTACGGCGGCGATGAGCCCGGCGACGGCGATGCAACAGTGCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACAAGATAGATCGATCAAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAATTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTACTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAACATTTGTACTTATATTATTGAGAAGTGCCA]
[+] EMBL AK111720 [GGAGAGGGAGAGGAGACAGAACGCCCTGCCCGTTTCAGACCTCGGCGCGTGCACATATATACCACCCCCTCCCGGTCTCCCATGCGCTCTCGATCACCATCTTCTGCTTCATCCATCATCCACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGCCGTGCTGGGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGCTCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCGGATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTACTCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCAAGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCAGGTGACACCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGTCGTCGGCGTCCTCCTCGACGACGACGGCGGCCAATAACAACAACAGCGGCGACACGGCCGGCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAGACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGCCAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCGGCGCCGTGTCGGACGAGCTGCTCGACCTGCCGGAGATCGACATCGAGCCGGATATATGGAGCATCATCGACGGCTACGGCGGCGATGAGCCCGGCGACGGCGATGCAACAGTGCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACAAGATAGATCGATCAAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAATTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTACTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAACATTTGTACTTATATTATTGAGAAGTGCCA]
[+] EMBL AK111933 [ ATCTTCTGCTTCATCCATCATCCACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGCCGTGCTGCGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGCTCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCGGATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTACTCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCAAGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCAGGTGACACCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGTCGTCGGCGTCCTCCTCGACGACGACGGCGGCCAATAACAACAACAGCGGCGACACGGCCGGCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAGACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGCCAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCGGCGCCGTGTCGGACGAGCTGCTCGACCTGCCGGAGATCGACATCGAGCCGGATATGTGGAGCATCATCGACGGCTACGGCGGCGATGAGCCCGGCGACGGCGATGCAACAGTGCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACGAGATAGATCGATCAAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAATTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTGCTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCT ]
[+] EMBL CB619057 [ TCCCTTTTCCACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGCCGTGCTGCGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGCTCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCGGATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTACTCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCAAGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCGGGTGACACCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGTCGTCGGCGTCCTCCTCGACGACGACGGTGGCCAATAACAACAACAGCGGCGACACGGCCGGCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAGACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGCCAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCG ]
consensusID : consensus_7341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[GCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACGAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAAGTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTGCTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAGCATTTGTACTTATATTATTGAGAAGTGCCAA]
[-] EMBL CB619058 [GCCATGTACCGCCAGCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGTGGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGGGCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCGCCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGACGAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAAGTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTGCTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAGCATTTGTACTTATATTATTGAGAAGTGCCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7341#0 GGAGAGGGAGAGGAGACAGAACGCCCTGCCCGTTTCAGACCTCGGCGCGTGCACATATAT 60
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 ACCACCCCCTCCCGGTCTCCCATGCGCTCTCGATCACCATCTTCTGCTTCATCCATCATC 120
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 CACTGCTACTCTGTCCGGGAAACGTTCAGACAGAGGTGGGCATGGGGAGGGGACGAGCGC 180
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 CGTGCTGCGCCAAGGTGGGGCTGAACAGGGGTTCGTGGACGCCGCAGGAGGACATGCGGC 240
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 TCATCGCCTACATCCAGAAGCACGGCCACGCCAACTGGCGAGCCCTCCCCAAGCAGGCCG 300
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 GATTGCTGCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTGCGCCCCGACC 360
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 TGAAGCGCGGCAACTTCACCGCCGACGAGGAGGACACCATCATCAAGCTGCACGGCCTAC 420
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 TCGGGAACAAGTGGTCCAAGATCGCGTCGTGCCTGCCCGGGAGGACGGACAACGAGATCA 480
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 AGAACGTGTGGAACACCCACCTGAAGAAGAGGGTGTCGCAGAGAGAGAAGCCAGGTGACA 540
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 CCAAGAAGAAGGGCAAGGCCGCGGACGCCAGCGACGACGCCGACGCGCATTCCCCGTCGT 600
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 CGTCGGCGTCCTCCTCGACGACGACGGCGGCCAATAACAACAACAGCGGCGACACGGCCG 660
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 GCGAGCAGTGCGGCACGAGCAAGGAGCCCGAGAACGTCGACGTGTCCTTCTTCGAGCAAG 720
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 ACATCGACATCTCGGACATGCTGGTGGACGCGCCCACGGAGGCGCCGCTGGTCGCGGCGC 780
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 CAATGCCGCCGTCCCCGTGCTCGTCGTCCTCCCTGACGACGACGACGTGCGTCGGCGCCG 840
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 TGTCGGACGAGCTGCTCGACCTGCCGGAGATCGACATCGAGCCGGATATATGGAGCATCA 900
consensus_7341#1 ------------------------------------------------------------
consensus_7341#0 TCGACGGCTACGGCGGCGATGAGCCCGGCGACGGCGATGCAACAGTGCCATGTACCGCCA 960
consensus_7341#1 ----------------------------------------------GCCATGTACCGCCA 14
**************
consensus_7341#0 GCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGT 1020
consensus_7341#1 GCCCGGGAGAGGAGGGAGCAGAGTGGTGGGTAGAGAATTTGGAGAAGGAGCTCGGCCTGT 74
************************************************************
consensus_7341#0 GGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGG 1080
consensus_7341#1 GGGGGCCCATGGACGAGTCCCTGGCCCATCCGGACCCACCCGGACAGGTTTGTTACCCGG 134
************************************************************
consensus_7341#0 GCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCG 1140
consensus_7341#1 GCCCACTCACGGAAACAGAGGGGGACCCAGTCTCCACCTACTTCCAGTCCGGGCCCACCG 194
************************************************************
consensus_7341#0 CCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCA 1200
consensus_7341#1 CCTCTCCGCTCCAGGAGATCGCATCACCCGCCGTTCTCTCATGATTCCACCGATGGATCA 254
************************************************************
consensus_7341#0 CGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGAC 1260
consensus_7341#1 CGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATCCAACGGAC 314
************************************************************
consensus_7341#0 AAGATAGATCGATCAAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCG 1320
consensus_7341#1 GAGATAGATCG--------------GCCACTGCACTATCATCTACAGCAAATACGAATCG 360
********** ***********************************
consensus_7341#0 ATCAACACAATTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGT 1380
consensus_7341#1 ATCAACACAAGTTACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGT 420
********** *************************************************
consensus_7341#0 GTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCC 1440
consensus_7341#1 GTTGCAGTAAATGGCGAAGGTTTAGATTAACTAGGATGCACATACAAAAAGGGTCAAGCC 480
************************************************************
consensus_7341#0 GTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTA 1500
consensus_7341#1 GTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACCTTCTAGTG 540
***********************************************************
consensus_7341#0 CTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCA 1560
consensus_7341#1 CTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCA 600
************************************************************
consensus_7341#0 CTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAACATT 1620
consensus_7341#1 CTCCATTGAAGAGCCAATGAGAAGTGCTATATATATCACACACTCCTATATTGTAGCATT 660
******************************************************* ****
consensus_7341#0 TGTACTTATATTATTGAGAAGTGCCA- 1646
consensus_7341#1 TGTACTTATATTATTGAGAAGTGCCAA 687
**************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||