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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1744 fasta sequence
[CCCCCTCCGAGAGAGACGCACGGTTGGGTTGGTTTCCTCTTCTTCGCTCTTGAGAGATTTGAGCTGAGAGAGAGAGAGAGAGAGAGAGGAGGGCTCTCGATCGTCTTCCTTGTTGCGCGCGCGCGTTCTCTAATCGAAGTCGATAGGATAGGAGGATAGTCTCCCCCGCTTGACTCGATCTTCTCCTTCCTCTCAACCGGGGAAAGCAAGGCCATGGGCAACTGCGCCAGCGCCATAGATTCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGAATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGTAACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGACGGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCTACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAGGGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCTGTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAATTTCCTTGGGAGGATTTCACACCCCAACCTTGTCAAACTCTTGGGCTATTGCAAGGATAATGACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCATCTGTTCCGCAGAGGAGCAGTTTACGAGCCACTGCCTTGGAGCCTCAGACTGAAGATTCTCATTGGTGCAGCTCGTGGCCTTGCCTTCCTTCATTCATCAGAGAGACAGATCATCTACAGGGACTTCAAGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTCTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGCTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCACCGATCATGATGATCAATGTAACAGTACAAAAATATACTAAATCTTTATAGCTGTCATATAGTCATATGCATAAATTCAATTATTTTTGTATTGAAGCATCACGGGTTGCATCAGGTTGCACTGAGAACAGCAAGAAGTCATTGTCAGTTTATATGCTTTCCTTTCATTTGGTTATAGTTTTATACAAGT]
[+] EMBL AK069558 [CCCCCTCCGAGAGAGACGCACGGTTGGGTTGGTTTCCTCTTCTTCGCTCTTGAGAGATTTGAGCTGAGAGAGAGAGAGAGAGAGAGAGGAGGGCTCTCGATCGTCTTCCTTGTTGCGCGCGCGCGTTCTCTAATCGAAGTCGATAGGATAGGAGGATAGTCTCCCCCGCTTGACTCGATCTTCTCCTTCCTCTCAACCGGGGAAAGCAAGGCCATGGGCAACTGCGCCAGCGCCATAGATTCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGAATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGTAACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGACGGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCTACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAGGGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCTGTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAATTTCCTTGGGAGGATTTCACACCCCAACCTTGTCAAACTCTTGGGCTATTGCAAGGATAATGACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCATCTGTTCCGCAGAGGAGCAGTTTACGAGCCACTGCCTTGGAGCCTCAGACTGAAGATTCTCATTGGTGCAGCTCGTGGCCTTGCCTTCCTTCATTCATCAGAGAGACAGATCATCTACAGGGACTTCAAGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTCTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGCTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCACCGATCATGATGATCAATGTAACAGTACAAAAATATACTAAATCTTTATAGCTGTCATATAGTCATATGCATAAATTCAATTATTTTTGTATTGAAGCATCACGGGTTGCATCAGGTTGCACTGAGAACAGCAAGAAGTCATTGTCAGTTTATATGCTTTCCTTTCATTTGGTTATAGTTTTATACAAGT]
[+] EMBL CB658631 [ ACGGTTGGGTTGGTTTCCTCTTCTTCGCTCTTGAGAGATTTGAGCTGAGAGAGAGAGAGAGAGAGAGAGGAGGGCTCTCGATCGTCTTCCTTGTTGCGCGCGCGCGTTCTCTAATCGAAGTCGATAGGATAGGAGGATAGTCTCCCCCGCTTGACTCGATCTTCTCCTTCCTCTCAACCGGGGAAAGCAAGGCCATGGGCAACTGCGCCAGCGCCATAGATTCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGAATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGTAACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGACGGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCTACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAGGGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCTGTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAATTTCCTTGGGAGGATTTCACACCCCAACCTTGTNCAACTCTTGGGCTATTGCAAGGATAATGACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCA ]
consensusID : consensus_7347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 764 fasta sequence
[AGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTTTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGGTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCCCCGATCATGATGATCAATGTAACAGTACAAAAATATTCTAAATCTTTATAGCTGTCATATAGTCATGTGCATAAATTCAATTATTTTTGTATTGAAAAAAAATAAAAGGAA]
[-] EMBL CB658632 [AGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTTTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGGTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCCCCGATCATGATGATCAATGTAACAGTACAAAAATATTCTAAATCTTTATAGCTGTCATATAGTCATGTGCATAAATTCAATTATTTTTGTATTGAAAAAAAATAAAAGG ]
[-] EMBL CB658641 [ AGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTTTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTCCTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTTTTGAGGGGCAGTATCATTTCAGGGGAGCCCTCCAAGCTGCTCAGCTCACTTTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGGTGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCCCCGATCATGATGATCAATGTAACAGTACAAAAATATACTAAATCTTTATAGCTGTCATATAGTCATATGCATAAATTCAATTATTTTTGTATTGAAAAAAA AAAAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7347#0 CCCCCTCCGAGAGAGACGCACGGTTGGGTTGGTTTCCTCTTCTTCGCTCTTGAGAGATTT 60
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 GAGCTGAGAGAGAGAGAGAGAGAGAGAGGAGGGCTCTCGATCGTCTTCCTTGTTGCGCGC 120
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 GCGCGTTCTCTAATCGAAGTCGATAGGATAGGAGGATAGTCTCCCCCGCTTGACTCGATC 180
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 TTCTCCTTCCTCTCAACCGGGGAAAGCAAGGCCATGGGCAACTGCGCCAGCGCCATAGAT 240
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 TCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGA 300
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 ATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGT 360
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 AACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGAC 420
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 GGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCT 480
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 ACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAG 540
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 GGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCT 600
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 GTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAAT 660
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 TTCCTTGGGAGGATTTCACACCCCAACCTTGTCAAACTCTTGGGCTATTGCAAGGATAAT 720
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 GACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCATCTGTTC 780
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 CGCAGAGGAGCAGTTTACGAGCCACTGCCTTGGAGCCTCAGACTGAAGATTCTCATTGGT 840
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 GCAGCTCGTGGCCTTGCCTTCCTTCATTCATCAGAGAGACAGATCATCTACAGGGACTTC 900
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 AAGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTG 960
consensus_7347#1 -AGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTG 59
***********************************************************
consensus_7347#0 GCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTAT 1020
consensus_7347#1 GCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTAT 119
************************************************************
consensus_7347#0 GGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTAT 1080
consensus_7347#1 GGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTAT 179
************************************************************
consensus_7347#0 GGCTTCGGCGTCGTGCTGCTTGAGATGCTCTCTGGCCTGAGGGCGCTGGACCCAAGCCGC 1140
consensus_7347#1 GGCTTCGGCGTCGTGCTGCTTGAGATGCTCTTTGGCCTGAGGGCGCTGGACCCAAGCCGC 239
******************************* ****************************
consensus_7347#0 CCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAG 1200
consensus_7347#1 CCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAG 299
************************************************************
consensus_7347#0 CTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAA 1260
consensus_7347#1 CTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAA 359
************************************************************
consensus_7347#0 GCTGCTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAG 1320
consensus_7347#1 GCTGGTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAG 419
**** *******************************************************
consensus_7347#0 GAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGG 1380
consensus_7347#1 GAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGG 479
************************************************************
consensus_7347#0 AACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACG 1440
consensus_7347#1 AACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACG 539
************************************************************
consensus_7347#0 AGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGG 1500
consensus_7347#1 AGCTCCAAGGGCAGATGATCGTAGAGATACATAAGATTGGGCTGATTCTGTTGGTGGTGG 599
************************************************************
consensus_7347#0 TGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCACCGATC 1560
consensus_7347#1 TGTAAAGTTTAACTATAGTAGATCTCAATTCTTGATGTCATGACGAAGTTTGCCCCGATC 659
***************************************************** ******
consensus_7347#0 ATGATGATCAATGTAACAGTACAAAAATATACTAAATCTTTATAGCTGTCATATAGTCAT 1620
consensus_7347#1 ATGATGATCAATGTAACAGTACAAAAATATTCTAAATCTTTATAGCTGTCATATAGTCAT 719
****************************** *****************************
consensus_7347#0 ATGCATAAATTCAATTATTTTTGTATTGAAGCATCACGGGTTGCATCAGGTTGCACTGAG 1680
consensus_7347#1 GTGCATAAATTCAATTATTTTTGTATTGAAAAAAAATAAAAGGAA--------------- 764
***************************** * * * *
consensus_7347#0 AACAGCAAGAAGTCATTGTCAGTTTATATGCTTTCCTTTCATTTGGTTATAGTTTTATAC 1740
consensus_7347#1 ------------------------------------------------------------
consensus_7347#0 AAGT 1744
consensus_7347#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||