cluster # 7349

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Oryza sativa
cluster # 7349 cluster # 7349 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7349#0 length = 853 sequences # 3

consensus_7349#1 length = 293 sequences # 1

consensusID : consensus_7349#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 853
fasta sequence

                              [CCCAAAAACCAGANCGTTTGCAAAAACGAACGGCCNAAAAAAAAAAGNCAAGGAAAAATCTCCNAGAAAAAATCCTTCGTTTACATTAAGCNTTTTGCTTTGGCTTTGCTTCATTCTTCGCCAACGCCAAAGAACGCACCGTGCCACCGCCATGGCCACNTTCNTTGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTCTCCTGCGCGCAGTCGCCGCGCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACCGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGGAAGCGGCCGCTGGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGGGAATGTGCGAGGGGGTGGAGTACGTGCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGGTGGTCGTCCCGCCGGCGCTCGGCTTCGGCGACGGCGGCGCCGACTTCGGCGACGCCGCCGCGCAGGTCCCACCGG]

[+] EMBL AU163665             [CCCAAAAACCAGANCGTTTGCAAAAACGAACGGCCNAAAAAAAAAAGNCAAGGAAAAATCTCCNAGAAAAAATCCTTCGTTTACATTAAGCNTTTTGCTTTGGCTTTGCTTCATTCTTCGCCAACGCCAAAGAACGCACCGTGCCACCGCCATGGCCACNTTCNTTGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTCTCCTGCGCGCAGTCGCCGCGCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACCGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCG                                                                                                                                                                                             ]
[-] EMBL CB642347             [                                                                                                                                                                                                                                           GCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACCGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGGAAGCGGCCGCTGGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGGGAATGTGCGAGGGGGTGGAGTACGTGCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGGTGGTCGTCCCGCCGGCGCTCGGCTTCGGCGACGGCGGCGCCGACTTCGGCGACGCCGCCGCGCAGGTCCCACCGG]
[+] EMBL CB642346             [                                                                                                                                                                                                                                                                                                           GTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGGAAGCGGCCGCTGGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGGGAATGTGCGAGGGGGTGGAGTACGTGCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGGTGGTCGTCCCGCCGGCGCTCGGCTTCGGCGACGACGGCGCCGACTTCGGCGACGCCGCCGCGCAGGTCCCGCC  ]




>consensus_7349#0
CCCAAAAACCAGANCGTTTGCAAAAACGAACGGCCNAAAAAAAAAAGNCAAGGAAAAATC
TCCNAGAAAAAATCCTTCGTTTACATTAAGCNTTTTGCTTTGGCTTTGCTTCATTCTTCG
CCAACGCCAAAGAACGCACCGTGCCACCGCCATGGCCACNTTCNTTGGAGCTCGCCGGCC
TTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTCTCCTGCGCGCAGTCGCCGCGCCCG
CCCAGCGCCCAGCCGCCGCCGGAGCAGCAACCGCCGACGCCGACGCCGACGCAGCAGCAG
TCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGC
GCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGG
CTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTC
GAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTT
CCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGG
GACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACG
TTCGGCGACGGGAAGCGGCCGCTGGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGGGA
ATGTGCGAGGGGGTGGAGTACGTGCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGGTG
GTCGTCCCGCCGGCGCTCGGCTTCGGCGACGGCGGCGCCGACTTCGGCGACGCCGCCGCG
CAGGTCCCACCGG

consensusID : consensus_7349#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [CCCCAAAANANACGCTGCAAAACGACGCCCAAAAAAAAAAGCGAGGAAAAATCTCCAGAAAAATCCTCGTTACATTAGCCTTTGCTTTGCTTGCTCACTCTCGCCACGCCAAGAACGCACCGTGCCACCGCCATGGCCACCTTCCTTGGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTTTCCTGCGCGCAGTCGACGCGCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACNGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGC]

[+] EMBL AU163664             [CCCCAAAANANACGCTGCAAAACGACGCCCAAAAAAAAAAGCGAGGAAAAATCTCCAGAAAAATCCTCGTTACATTAGCCTTTGCTTTGCTTGCTCACTCTCGCCACGCCAAGAACGCACCGTGCCACCGCCATGGCCACCTTCCTTGGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTTTCCTGCGCGCAGTCGACGCGCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACNGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGC]




>consensus_7349#1
CCCCAAAANANACGCTGCAAAACGACGCCCAAAAAAAAAAGCGAGGAAAAATCTCCAGAA
AAATCCTCGTTACATTAGCCTTTGCTTTGCTTGCTCACTCTCGCCACGCCAAGAACGCAC
CGTGCCACCGCCATGGCCACCTTCCTTGGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTC
GCCGCCAAGCCGCACCTTTCCTGCGCGCAGTCGACGCGCCCGCCCAGCGCCCAGCCGCCG
CCGGAGCAGCAACNGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7349#0      -CCCAAAAACCAGANCGTTTGCAAAAACGAACGGCCNAAAAAAAAAAGNCAAGGAAAAAT 59
consensus_7349#1      CCCCAAAANANACGCTGC-----AAAACGAC--GCCCAAAAAAAAAAGC-GAGGAAAAAT 52
                       *******   *    *      *******   *** ***********   *********

consensus_7349#0      CTCCNAGAAAAAATCCTTCGTTTACATTAAGCNTTTTGCTTTGGCTTTGCTTCATTCTTC 119
consensus_7349#1      CTCCAGAAAAA---TCCTCGTT-ACATTAG--CCTTTGCTTTG--CTTGCT-CACTCT-C 102
                      ****   ****    * ***** ******     *********   ***** ** *** *

consensus_7349#0      GCCAACGCCAAAGAACGCACCGTGCCACCGCCATGGCCACNTTCNTTGG-AGCTCGCCGG 178
consensus_7349#1      GCCA-CGCCAA-GAACGCACCGTGCCACCGCCATGGCCACCTTCCTTGGGAGCTCGCCGG 160
                      **** ****** **************************** *** **** **********

consensus_7349#0      CCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTCTCCTGCGCGCAGTCGCCGCGCC 238
consensus_7349#1      CCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTTTCCTGCGCGCAGTCGACGCGCC 220
                      ************************************* *************** ******

consensus_7349#0      CGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACCGCCGACGCCGACGCCGACGCAGCAGC 298
consensus_7349#1      CGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACNGCCGACGCCGACGCCGACGCAGCAGC 280
                      ********************************* **************************

consensus_7349#0      AGTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCG 358
consensus_7349#1      AGTCCATGCAAGC----------------------------------------------- 293
                      *************                                               

consensus_7349#0      GCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCG 418
consensus_7349#1      ------------------------------------------------------------
                                                                                  

consensus_7349#0      GGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCT 478
consensus_7349#1      ------------------------------------------------------------
                                                                                  

consensus_7349#0      TCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCC 538
consensus_7349#1      ------------------------------------------------------------
                                                                                  

consensus_7349#0      TTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGG 598
consensus_7349#1      ------------------------------------------------------------
                                                                                  

consensus_7349#0      GGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACA 658
consensus_7349#1      ------------------------------------------------------------
                                                                                  

consensus_7349#0      CGTTCGGCGACGGGAAGCGGCCGCTGGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGG 718
consensus_7349#1      ------------------------------------------------------------
                                                                                  

consensus_7349#0      GAATGTGCGAGGGGGTGGAGTACGTGCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGG 778
consensus_7349#1      ------------------------------------------------------------
                                                                                  

consensus_7349#0      TGGTCGTCCCGCCGGCGCTCGGCTTCGGCGACGGCGGCGCCGACTTCGGCGACGCCGCCG 838
consensus_7349#1      ------------------------------------------------------------
                                                                                  

consensus_7349#0      CGCAGGTCCCACCGG 853
consensus_7349#1      ---------------