These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 853 fasta sequence [CCCAAAAACCAGANCGTTTGCAAAAACGAACGGCCNAAAAAAAAAAGNCAAGGAAAAATCTCCNAGAAAAAATCCTTCGTTTACATTAAGCNTTTTGCTTTGGCTTTGCTTCATTCTTCGCCAACGCCAAAGAACGCACCGTGCCACCGCCATGGCCACNTTCNTTGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTCTCCTGCGCGCAGTCGCCGCGCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACCGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGGAAGCGGCCGCTGGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGGGAATGTGCGAGGGGGTGGAGTACGTGCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGGTGGTCGTCCCGCCGGCGCTCGGCTTCGGCGACGGCGGCGCCGACTTCGGCGACGCCGCCGCGCAGGTCCCACCGG] [+] EMBL AU163665 [CCCAAAAACCAGANCGTTTGCAAAAACGAACGGCCNAAAAAAAAAAGNCAAGGAAAAATCTCCNAGAAAAAATCCTTCGTTTACATTAAGCNTTTTGCTTTGGCTTTGCTTCATTCTTCGCCAACGCCAAAGAACGCACCGTGCCACCGCCATGGCCACNTTCNTTGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTCTCCTGCGCGCAGTCGCCGCGCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACCGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCG ] [-] EMBL CB642347 [ GCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACCGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGGAAGCGGCCGCTGGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGGGAATGTGCGAGGGGGTGGAGTACGTGCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGGTGGTCGTCCCGCCGGCGCTCGGCTTCGGCGACGGCGGCGCCGACTTCGGCGACGCCGCCGCGCAGGTCCCACCGG] [+] EMBL CB642346 [ GTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGGAAGCGGCCGCTGGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGGGAATGTGCGAGGGGGTGGAGTACGTGCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGGTGGTCGTCCCGCCGGCGCTCGGCTTCGGCGACGACGGCGCCGACTTCGGCGACGCCGCCGCGCAGGTCCCGCC ] consensusID : consensus_7349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [CCCCAAAANANACGCTGCAAAACGACGCCCAAAAAAAAAAGCGAGGAAAAATCTCCAGAAAAATCCTCGTTACATTAGCCTTTGCTTTGCTTGCTCACTCTCGCCACGCCAAGAACGCACCGTGCCACCGCCATGGCCACCTTCCTTGGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTTTCCTGCGCGCAGTCGACGCGCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACNGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGC] [+] EMBL AU163664 [CCCCAAAANANACGCTGCAAAACGACGCCCAAAAAAAAAAGCGAGGAAAAATCTCCAGAAAAATCCTCGTTACATTAGCCTTTGCTTTGCTTGCTCACTCTCGCCACGCCAAGAACGCACCGTGCCACCGCCATGGCCACCTTCCTTGGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTTTCCTGCGCGCAGTCGACGCGCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACNGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7349#0 -CCCAAAAACCAGANCGTTTGCAAAAACGAACGGCCNAAAAAAAAAAGNCAAGGAAAAAT 59 consensus_7349#1 CCCCAAAANANACGCTGC-----AAAACGAC--GCCCAAAAAAAAAAGC-GAGGAAAAAT 52 ******* * * ******* *** *********** ********* consensus_7349#0 CTCCNAGAAAAAATCCTTCGTTTACATTAAGCNTTTTGCTTTGGCTTTGCTTCATTCTTC 119 consensus_7349#1 CTCCAGAAAAA---TCCTCGTT-ACATTAG--CCTTTGCTTTG--CTTGCT-CACTCT-C 102 **** **** * ***** ****** ********* ***** ** *** * consensus_7349#0 GCCAACGCCAAAGAACGCACCGTGCCACCGCCATGGCCACNTTCNTTGG-AGCTCGCCGG 178 consensus_7349#1 GCCA-CGCCAA-GAACGCACCGTGCCACCGCCATGGCCACCTTCCTTGGGAGCTCGCCGG 160 **** ****** **************************** *** **** ********** consensus_7349#0 CCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTCTCCTGCGCGCAGTCGCCGCGCC 238 consensus_7349#1 CCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCGCACCTTTCCTGCGCGCAGTCGACGCGCC 220 ************************************* *************** ****** consensus_7349#0 CGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACCGCCGACGCCGACGCCGACGCAGCAGC 298 consensus_7349#1 CGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAACNGCCGACGCCGACGCCGACGCAGCAGC 280 ********************************* ************************** consensus_7349#0 AGTCCATGCAAGCCCAGCCGCAGGCGAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCG 358 consensus_7349#1 AGTCCATGCAAGC----------------------------------------------- 293 ************* consensus_7349#0 GCGCGGACTCGACGGACTGGGTGGCGACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCG 418 consensus_7349#1 ------------------------------------------------------------ consensus_7349#0 GGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCT 478 consensus_7349#1 ------------------------------------------------------------ consensus_7349#0 TCGAGGTCGCGCAGCAGCTGGCCAACACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCC 538 consensus_7349#1 ------------------------------------------------------------ consensus_7349#0 TTCCCAACGGAATACGGTACTACGAGATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGG 598 consensus_7349#1 ------------------------------------------------------------ consensus_7349#0 GGGACCTGGTGGTGATCGACCTGAAGGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACA 658 consensus_7349#1 ------------------------------------------------------------ consensus_7349#0 CGTTCGGCGACGGGAAGCGGCCGCTGGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGG 718 consensus_7349#1 ------------------------------------------------------------ consensus_7349#0 GAATGTGCGAGGGGGTGGAGTACGTGCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGG 778 consensus_7349#1 ------------------------------------------------------------ consensus_7349#0 TGGTCGTCCCGCCGGCGCTCGGCTTCGGCGACGGCGGCGCCGACTTCGGCGACGCCGCCG 838 consensus_7349#1 ------------------------------------------------------------ consensus_7349#0 CGCAGGTCCCACCGG 853 consensus_7349#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||