These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1492 fasta sequence [TCTTTTTTTTTTTTTTTTTTGGAAGCAACTAAGCACTAAGTCTAATAAACCATCAAGAATGCAAAATCAATAAGTTACAACACAC-GTCTTAAATAATTAAATATGGTCATGTCATATGGCAGGGCGAGGTGTTCCCATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCTTTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGGGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCAGTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGATCTCGCTGTTCCTAGAAGACTCTTCCCTATTATTGGGTAAGGCCTTTTCAATAAATCCTGTCGATGAACTACAAGTGCAGGTACTAAATAGACCGGAACATAGACAGGTACTGCTCTTCCATATGCTTGAAACAAGAATGTAATAAAATGCCCTGCACATGATTGATTTCCATGCACAATCGAGCAAGGGACTTTCATATTTGGATCTAACTTTAGGTCAACACCCACAGACTTGTAGTACTTCTCAATACCCGCTAGGTTAGAGAAAGCAGTGTGATTGACTACTTCTTTCACACCTTGCAGAATAGTAAGATCCTTCCCACCATGCTTATTTAGAAATGCTTTATAAGTTGATGGCAAACTTTCTTGACTTAAAATATAGGCAGATAAAATTTGTGCAGATGAAAGGCACATAAGGAAGATGTCACCATGCGACCAAGTCAAAGGCTTGCAAATATTTCCAAATCTTTTGCTCTTTATTCCACAACGGGATGCAAGGACAGCTGCACGCATAAGAATGTATATTGCCAAGCTAGTATGTTGTGTGCCTGGCCCTGTCAAGAGCATCGAAGGACCAGCAATTAACCCAGCCAATAATGATCTCCACCTTGCTGTTCTCTTACGGCCCCAGATGCCGGCGATGCACTCGTCGACGGAGACGTAGCTTCCGGCGAAGGTCCCCAGGAACAAGCCGTACCTCACCGTCTCCTTCAGCGCTAGCACCACCGCCTCCTCGTTGGTCATGGCGC] [+] EMBL CB621776 [TCTTTTTTTTTTTTTTTTTTGGAAGCAACTAAGCACTAAGTCTAATAAACCATCAAGAATGCAAAATCAATAAGTTACAACACAC GTCTTAAATAATTAAATATGGTCATGTCATATGGCAGGGCGAGGTGTTCCCATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCTTTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGGGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCAGTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGATCTCGCTGTTCCTAGAAGACTCTTCC ] [+] EMBL CB631944 [ CACACNGTCTTAAATAATTAAACATGGTCATGTCATATGGCAGGGCGAGGTGTTCCGATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCTTTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGTGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCAGTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGATCTCGCTGTTCCTAGAAGACTCTTCCCTATTATTGGGTAAGGCCTTTTCAATAAATCCTGTCGATGAACTACAAGTGCAGGTACTAAATAGACCGGAACATAGACAGGTACTGCTCTTCCATATGCTTGAAACAAGAATGTAATAAAATGCC ] [-] EMBL CB631943 [ GCTTGATCTCGCTGTTCCTAGAAGACTCTTCCCTATTATTGGGTAAGGCCTTTTCAATAAATCCTGTCGATGAACTACAAGTGCAGGTACTAAATAGACCGGAACATAGACAGGTACTGCTCTTCCATATGCTTGAAACAAGAATGTAATAAAATGCCCTGCACATGATTGATTTCCATGCACAATCGAGCAAGGGACTTTCATATTTGGATCTAACTTTAGGTCAACACCCACAGACTTGTAGTACTTCTCAATACCCGCTAGGTTAGAGAAAGCAGTGTGATTGACTACTTCTTTCACACCTTGCAGAATAGTAAGATCCTTCCCACCATGCTTATTTAGAAATGCTTTATAAGTTGATGGCAAACTTTCTTGACTTAAAATATAGGCAGATAAAATTTGTGCAGATGAAAGGCACATAAGGAAGATGTCACCATGCGACCAAGTCAAAGGCTTGCAAATATTTCCAAATCTTTTGCTCTTTATTCCACAACGGGATGCAAGGACAGCTGCACGCATAAGAATGTATATTGCCAAGCTAGTATGTTGTGTGCCTGGCCCTGTCAAGAGCATCGAAGGACCAGCAATTAACCCAGCCAATAATGATCTCCACCTTGCTGTTCTCTTACGGCCCCAGATGCCGGCGATGCACTCGTCGACGGAGACGTAGCTTCCGGCGAAGGTCCCCAGGAACAAGCCGTACCTCACCGTCTCCTTCAGCGCTAGCACCACCGCCTCCTCGTTGGTCATGGCGC] consensusID : consensus_7361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [TTTTTTTTTTTAAGTTACAACACACGTCTTAAATAATTAAATATGGTCATGTCATATGGCAGGGCGAGGTGTTCCGATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCATTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGTGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCANTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGAT] [+] EMBL CA758976 [TTTTTTTTTTTAAGTTACAACACACGTCTTAAATAATTAAATATGGTCATGTCATATGGCAGGGCGAGGTGTTCCGATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCATTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGTGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCANTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7361#0 TCTTTTTTTTTTTTTTTTTTGGAAGCAACTAAGCACTAAGTCTAATAAACCATCAAGAAT 60 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 GCAAAATCAATAAGTTACAACACACGTCTTAAATAATTAAATATGGTCATGTCATATGGC 120 consensus_7361#1 TTTTTTTTTTTAAGTTACAACACACGTCTTAAATAATTAAATATGGTCATGTCATATGGC 60 * ************************************************** consensus_7361#0 AGGGCGAGGTGTTCCCATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAA 180 consensus_7361#1 AGGGCGAGGTGTTCCGATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAA 120 *************** ******************************************** consensus_7361#0 ATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTAT 240 consensus_7361#1 ATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTAT 180 ************************************************************ consensus_7361#0 CTTTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGC 300 consensus_7361#1 CATTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGC 240 * ********************************************************** consensus_7361#0 CACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTT 360 consensus_7361#1 CACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTT 300 ************************************************************ consensus_7361#0 TCTTCATCAGATGGAGGGGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGAC 420 consensus_7361#1 TCTTCATCAGATGGAGGTGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGAC 360 ***************** ****************************************** consensus_7361#0 CGAAAAACTTCTCTTTCTTGAGCATAGCAGTGCATGATGATCGACGTAGCCATACTGAAT 480 consensus_7361#1 CGAAAAACTTCTCTTTCTTGAGCATAGCANTGCATGATGATCGACGTAGCCATACTGAAT 420 ***************************** ****************************** consensus_7361#0 ACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATG 540 consensus_7361#1 ACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATG 480 ************************************************************ consensus_7361#0 CATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTG 600 consensus_7361#1 CATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTG 540 ************************************************************ consensus_7361#0 CTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGA 660 consensus_7361#1 CTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGA 600 ************************************************************ consensus_7361#0 GTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAG 720 consensus_7361#1 GTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAG 660 ************************************************************ consensus_7361#0 TACACTGAGAGGAACAGGCTTGATCTCGCTGTTCCTAGAAGACTCTTCCCTATTATTGGG 780 consensus_7361#1 TACACTGAGAGGAACAGGCTTGAT------------------------------------ 684 ************************ consensus_7361#0 TAAGGCCTTTTCAATAAATCCTGTCGATGAACTACAAGTGCAGGTACTAAATAGACCGGA 840 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 ACATAGACAGGTACTGCTCTTCCATATGCTTGAAACAAGAATGTAATAAAATGCCCTGCA 900 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 CATGATTGATTTCCATGCACAATCGAGCAAGGGACTTTCATATTTGGATCTAACTTTAGG 960 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 TCAACACCCACAGACTTGTAGTACTTCTCAATACCCGCTAGGTTAGAGAAAGCAGTGTGA 1020 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 TTGACTACTTCTTTCACACCTTGCAGAATAGTAAGATCCTTCCCACCATGCTTATTTAGA 1080 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 AATGCTTTATAAGTTGATGGCAAACTTTCTTGACTTAAAATATAGGCAGATAAAATTTGT 1140 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 GCAGATGAAAGGCACATAAGGAAGATGTCACCATGCGACCAAGTCAAAGGCTTGCAAATA 1200 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 TTTCCAAATCTTTTGCTCTTTATTCCACAACGGGATGCAAGGACAGCTGCACGCATAAGA 1260 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 ATGTATATTGCCAAGCTAGTATGTTGTGTGCCTGGCCCTGTCAAGAGCATCGAAGGACCA 1320 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 GCAATTAACCCAGCCAATAATGATCTCCACCTTGCTGTTCTCTTACGGCCCCAGATGCCG 1380 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 GCGATGCACTCGTCGACGGAGACGTAGCTTCCGGCGAAGGTCCCCAGGAACAAGCCGTAC 1440 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 CTCACCGTCTCCTTCAGCGCTAGCACCACCGCCTCCTCGTTGGTCATGGCGC 1492 consensus_7361#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||