These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1762 fasta sequence [CTGCGAAGGACGCCGCCTCCCATTCCGTGGTACTCTGGAAAGTCGAGGCGCGACGCCGGCGACGTGAGCGCCATTGGAGGTCGGCGGCGAGTTCTTCACCGGCAGATTCTGCTCGCGACTCCTTCCTTGCACTGCGATCTCAATTCTTGCTTACTTGCGCTGTTGATTCATATGGCTTCTTTTGGTCTTCTGCTCTTGTGCAGTTTCCACGCGCACCACCTGTTCGACGAAACGCCACTGCGTGATCGGCCGCCATGGAGGGTCGTCCTGGGAGGCGCAGGCGCAGGAGGGTCAAGGCCCCGACGCGCGCTGCCGGCATGGACTGGATCAGCGGCCTCCCCGACGAAATCCTCCACCACATCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCCCGGCGGTGGAGCGATCTCTGGCGCACCGTGCCCTGCATCAACGCCGACTTCAATGAGTTTGATTTCATTGATTACCAAGGGGACGATGAGGACTACAACGACGAGGTGGCGTTCAAGAGGTTCGTTAACCGGATGTTGGAGCTCCGCGATCCTGCCACCATGATGGACAAATTCTGGCTCAAGTACAAAATATCAGACGGGTACAATGAATACAAGGATTCCAATGTAGATGCCAACAGGTGGATTAGCCATGCTTTGCAAAAGCAGGCCAGGGTTATGGAGGTTGTCGTGTTCTCCTTTCCATTGGAGCTCGATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTTTACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCTTACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAATCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTTCTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAACGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTACAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCAGCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGGATCGTTAGCGAGCTTATGGAAAGATCATTTACATGCGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGCAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTCATATCAAACACTGGGGCCAATACGAGGAAGAGGATGAGTTACCTGCATTTGTTCGGTATGAGGAGAGATGAAATGCCAAAGGATCTTTTGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGCTACAGTAGAGTTCCGAGGTCTTATTTTGCATTTTTGCTGGTCTGTAGTAATGGCATCCAATAACTTTGCTAGTTTTCATTCCACTCCTAATCTCTGATTACATTAGCAGTTGTTCAACCAAGGACCTATTTATCCCTTGTACAACAGAATTT-CTTTCCATTCATCAACTAATTTTT] [+] EMBL AK102940 [CTGCGAAGGACGCCGCCTCCCATTCCGTGGTACTCTGGAAAGTCGAGGCGCGACGCCGGCGACGTGAGCGCCATTGGAGGTCGGCGGCGAGTTCTTCACCGGCAGATTCTGCTCGCGACTCCTTCCTTGCACTGCGATCTCAATTCTTGCTTACTTGCGCTGTTGATTCATATGGCTTCTTTTGGTCTTCTGCTCTTGTGCAGTTTCCACGCGCACCACCTGTTCGACGAAACGCCACTGCGTGATCGGCCGCCATGGAGGGTCGTCCTGGGAGGCGCAGGCGCAGGAGGGTCAAGGCCCCGACGCGCGCTGCCGGCATGGACTGGATCAGCGGCCTCCCCGACGAAATCCTCCACCACATCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCCCGGCGGTGGAGCGATCTCTGGCGCACCGTGCCCTGCATCAACGCCGACTTCAATGAGTTTGATTTCATTGATTACCAAGGGGACGATGAGGACTACAACGACGAGGTGGCGTTCAAGAGGTTCGTTAACCGGATGTTGGAGCTCCGCGATCCTGCCACCATGATGGACAAATTCTGGCTCAAGTACAAAATATCAGACGGGTACAATGAATACAAGGATTCCAATGTAGATGCCAACAGGTGGATTAGCCATGCTTTGCAAAAGCAGGCCAGGGTTATGGAGGTTGTCGTGTTCTCCTTTCCATTGGAGCTCGATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTTTACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCTTACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAATCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTTCTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAACGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTACAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCAGCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGGATCGTTAGCGAGCTTATGGAAAGATCATTTACATGCGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGCAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTCATATCAAACACTGGGGCCAATACGAGGAAGAGGATGAGTTACCTGCATTTGTTCGGTATGAGGAGAGATGAAATGCCAAAGGATCTTTTGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGCTACAGTAGAGTTCCGAGGTCTTATTTTGCATTTTTGCTGGTCTGTAGTAATGGCATCCAATAACTTTGCTAGTTTTCATTCCACTCCTAATCTCTGATTACATTAGCAGTTGTTCAACCAAGGACCTATTTATCCCTTGTACAACAGAATTT CTTTCCATTCATCAACTA ] [+] EMBL CF324594 [ GATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTTTACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCTTACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAATCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTTCTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAACGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTACAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGA ] [+] EMBL D43367 [ TCAGTGTGCAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTCATATCAAACACTGGGGCCAATACGAGGAAGAGGATGAGTTACCTGCATTTGTTCGGTATGAGGAGAGATGAAATGCCAAAGGATCTTTTGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGCTACAGTAGAGTTCCGAGGTCTTATTTTGCATTTTTGCTGGTCTGTAGTAATGGCATCCAATAACTTTGCTAGTTTTCATTCCACTCCTAATCTCTGGTTACATTAGCAGTTGTTCAACCAAGGACCTATTTATCCCTTGTACAACAGGATTTCCTTTCCATTCATCAACCTATTTTT] consensusID : consensus_7366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence [GTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTCAATTATGAGGGTACAGAGCTGACATTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCGATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCACCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGTGCATTGCAGATAAATCTCCAAGAATTGTTGGCGAGCTTATGGAAAGATCATTTACGTGTGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGGAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTGATATCAAACACTGGGGCCAATACAAGGACGAGTTACCTGCATTTATTCGGTATGAGGAGAGATGAAATGCCAAAGGATCATGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGTTACAGTAGAGTTTTAAGGTCTCCTGCATTTTTGCTGGTCTCTAGGAATGGCATCCAATAACTTGCTAGTTTTCAACTGAACAAATCGAGTAATGTGTCATTCTACTCCTAATCTCTGGTTACATTAGCAGTTGTTCAACCAAGAACCTATTTATCCCTTGTACAACAGAATTTCTTTCCATTCATCAACTATTTTTGTCGAGTCTCTTCAG] [+] EMBL AK063758 [GTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTCAATTATGAGGGTACAGAGCTGACATTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCGATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCACCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGTGCATTGCAGATAAATCTCCAAGAATTGTTGGCGAGCTTATGGAAAGATCATTTACGTGTGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGGAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTGATATCAAACACTGGGGCCAATACAAGGACGAGTTACCTGCATTTATTCGGTATGAGGAGAGATGAAATGCCAAAGGATCATGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGTTACAGTAGAGTTTTAAGGTCTCCTGCATTTTTGCTGGTCTCTAGGAATGGCATCCAATAACTTGCTAGTTTTCAACTGAACAAATCGAGTAATGTGTCATTCTACTCCTAATCTCTGGTTACATTAGCAGTTGTTCAACCAAGAACCTATTTATCCCTTGTACAACAGAATTTCTTTCCATTCATCAACTATTTTTGTCGAGTCTCTTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7366#0 CTGCGAAGGACGCCGCCTCCCATTCCGTGGTACTCTGGAAAGTCGAGGCGCGACGCCGGC 60 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 GACGTGAGCGCCATTGGAGGTCGGCGGCGAGTTCTTCACCGGCAGATTCTGCTCGCGACT 120 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 CCTTCCTTGCACTGCGATCTCAATTCTTGCTTACTTGCGCTGTTGATTCATATGGCTTCT 180 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 TTTGGTCTTCTGCTCTTGTGCAGTTTCCACGCGCACCACCTGTTCGACGAAACGCCACTG 240 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 CGTGATCGGCCGCCATGGAGGGTCGTCCTGGGAGGCGCAGGCGCAGGAGGGTCAAGGCCC 300 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 CGACGCGCGCTGCCGGCATGGACTGGATCAGCGGCCTCCCCGACGAAATCCTCCACCACA 360 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 TCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCCCGGCGGTGGA 420 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 GCGATCTCTGGCGCACCGTGCCCTGCATCAACGCCGACTTCAATGAGTTTGATTTCATTG 480 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 ATTACCAAGGGGACGATGAGGACTACAACGACGAGGTGGCGTTCAAGAGGTTCGTTAACC 540 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 GGATGTTGGAGCTCCGCGATCCTGCCACCATGATGGACAAATTCTGGCTCAAGTACAAAA 600 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 TATCAGACGGGTACAATGAATACAAGGATTCCAATGTAGATGCCAACAGGTGGATTAGCC 660 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 ATGCTTTGCAAAAGCAGGCCAGGGTTATGGAGGTTGTCGTGTTCTCCTTTCCATTGGAGC 720 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 TCGATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTT 780 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 TACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCT 840 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 TACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAA 900 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 TCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTT 960 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 CTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAA 1020 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 CGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATC 1080 consensus_7366#1 ------------------------------------GTTATGGTTTTGATGCTAATGATC 24 ************************ consensus_7366#0 TCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTA 1140 consensus_7366#1 TCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTCAATTATGAGGGTA 84 ********************************************** ************* consensus_7366#0 CAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACC 1200 consensus_7366#1 CAGAGCTGACATTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCGATGTTGTCAACC 144 ********** ************************************ ************ consensus_7366#0 TGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGA 1260 consensus_7366#1 TGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGA 204 ************************************************************ consensus_7366#0 ACTCAGCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAG------------------- 1301 consensus_7366#1 ACTCACCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGTGCATTGCAGATAAATCTC 264 ***** *********************************** consensus_7366#0 ----GATCGTTAGCGAGCTTATGGAAAGATCATTTACATGCGAGCACCTTAAGATTGTTG 1357 consensus_7366#1 CAAGAATTGTTGGCGAGCTTATGGAAAGATCATTTACGTGTGAGCACCTTAAGATTGTTG 324 ** *** ************************* ** ******************* consensus_7366#0 AAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGCAAGATTTCTTTGCTAGTA 1417 consensus_7366#1 AAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGGAAGATTTCTTTGCTAGTA 384 ***************************************** ****************** consensus_7366#0 ATGGCATGGCCTCTGTTCAGTTTCATATCAAACACTGGGGCCAATACGAGGAAGAGGATG 1477 consensus_7366#1 ATGGCATGGCCTCTGTTCAGTTTGATATCAAACACTGGGGCCAATACAA------GGACG 438 *********************** *********************** * *** * consensus_7366#0 AGTTACCTGCATTTGTTCGGTATGAGGAGAGATGAAATGCCAAAGGATCTTTTGCATTTG 1537 consensus_7366#1 AGTTACCTGCATTTATTCGGTATGAGGAGAGATGAAATGCCAAAGGATCAT--GCATTTG 496 ************** ********************************** * ******* consensus_7366#0 TTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGCTACAGTAGAGT 1597 consensus_7366#1 TTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGTTACAGTAGAGT 556 ************************************************ *********** consensus_7366#0 TCCGAGGTCTTATTTTGCATTTTTGCTGGTCTGTAGTAATGGCATCCAATAACTTTGCTA 1657 consensus_7366#1 TTTAAGGTC---TCCTGCATTTTTGCTGGTCTCTAGGAATGGCATCCAATAACTT-GCTA 612 * ***** * ***************** *** ****************** **** consensus_7366#0 GTTTTCA-------------------------TTCCACTCCTAATCTCTGATTACATTAG 1692 consensus_7366#1 GTTTTCAACTGAACAAATCGAGTAATGTGTCATTCTACTCCTAATCTCTGGTTACATTAG 672 ******* *** ************** ********* consensus_7366#0 CAGTTGTTCAACCAAGGACCTATTTATCCCTTGTACAACAGAATTTCTTTCCATTCATCA 1752 consensus_7366#1 CAGTTGTTCAACCAAGAACCTATTTATCCCTTGTACAACAGAATTTCTTTCCATTCATCA 732 **************** ******************************************* consensus_7366#0 ACTAATTTTT-------------- 1762 consensus_7366#1 ACTATTTTTGTCGAGTCTCTTCAG 756 **** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||