These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence [CCCCTTCGACCAACTCAACTTCGACCTTCGAGTATCCTGCTGCGAATCGGCCTGCAGTGGTAAGTACCTGAAGGGTCCGTTGGGATGGCCATGCCCGACACCACCTTCATGTTGTGAGAGATTATTTATTAGTAATCAACATATATAAGCAGCAACTAGCGGAATGGCTAAATCTTACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGACAGGTCGATTCGTCCTGTGTTTGCATGGCATCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAGCTGCTACGGTTTCCTGACGGGCTCACCATTGCAGGAGGAATGGTCGGTTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCTCCTCTTGCATGTTGAGTTCGTAGCTCGATACCCGGAACTCTAGGTCTGCAATCTTCGCCTCGGTATCTCTCTTGCTCCTCATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAAACCAATCTTCCAAGGAATCACCCCTTTCCCTCGTGTTCGTCCTGGATGCTCTGGAGTCTGCAGGGCAAGTGTCAGCTCGTCCCTATCTCTGTCTGGTCGGAACGTGCCCTGAGAGGAGGCTTCCACTGCATCTGTTAGTCGTCGCGCAGCCTCTCGTATCTGATCGCCGAAGACCAGTGAGCCATCAGCTGGGTTGAGCGTTCCACCGTGAGCGTAGTACCAGAACTTCGATCGTTCCGACCAATTGGCTGTTGCCGGTTCGATACCCTCTCATC] [+] EMBL CB632288 [CCCCTTCGACCAACTCAACTTCGACCTTCGAGTATCCTGCTGCGAATCGGCCTGCAGTGGTAAGTACCTGAAGGGTCCGTTGGGATGGCCATGCCCGACACCACCTTCATGTTGTGAGAGATTATTTATTAGTAATCAACATATATAAGCAGCAACTAGCGGAATGGCTAAATCTTACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGACAGGTCGATTCGTCCTGTGTTTGCATGGCATCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAGCTGCTACGGTTTCCTGACGGGCTCACCATTGCAGGAGGAATGGTCGGTTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCTCCTCTTGCATGTTGAGTTCGTAGCTCGATACCCGGAACTCTAGGTCTGCAATCTTCGCCTCGGTATCTCTCTTGCTCCTCATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAAACCAATCTTCCAAGGAATCACCCCTTTCCCTCGTGTTCGTCCTGGATGCTCTGGAGTCTGCAGGGCAAGTGTCAGCTCGTCCCTATCTCTGTCTGGTCGGAACGTGCCCTGAGAGGAGGCTTCCACTGCATCTGTTAGTCGTCGCGCAGCCTCTCGTATCTGATCGCCGAAGACCAGTGAGCCATCAGCTGGGTTGAGCGTTCCACCGTGAGCGTAGTACCAGAACTTCGATCGTTCCGACCAATTGGCTGTTGCCGGTTCGATACCCTCTCATC] [+] EMBL CB632286 [cgctTTCGACCAACTCAACTTCGACCTTCGAGTATCCTGCTG GAATCGGCCTGCAGTGGTAAGTACCTGAAGGGTCCGTTGGGATGGCCATGCCCGACACCACCTTCATGTTGTGAGAGATTATTTATTAGTAATCAACATATATAAGCAGCAACTAGCGGAATGGCTAAATCTTACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGACAGGTCGATTCGTCCTGTGTTTGCATGGCATCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAGCTGCTACGGTTTCCTGACGGGCTCACCATTGCAGGAGGAATGGTCGGTTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCTCCTCTTGCATGTTGAGTTCGTAGCTCGATACCCGGAACTCTAGGTCTGCAATCTTCGCCTCGGTATCTCTCTTGCTCCTCATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAAACCAATCTTCCAAGGAATCACCCCTTTCCCTCGTGTTCGTCCTGGATGCTCTGGAGTCTGCAGGGCAAGTGTCAGCTCGTCCCTATCTCTGTCTGGTCGGAACGTGCCCTGAGAGGAGGCTTCCACTGCATCTGTTAGTCGTCGCGCAGCCT ] consensusID : consensus_7369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [GCGGAATGTACAAGTCAANAATCATAAAACTACGAGCATACCTTGATTGATAAGTTCTTGAAGGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGGCAAGTGGTTTCATCCTGGGTTTGCATGGCGTCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAACTGCTACGATTGCCTGATGGGCTAACCATTGCAGGAGGAATGTACGGCTGGGGATTCTGGGACCGATGTGCGGCCATGCATTCATCCACCTTCCTTGCCACCTCCTCTTGCATGCTGAGCTCGTAGCTCGATACCCTGTACTCAAGATTTGCAATCTTCGCCTCGATATCTCTCTTACTCCTCATCCAACTCCTGTACGTGTGGATGTCCTCCTTGAATCTAATCTTCCAGGGAATCACGCCTTTCCCTCGTGTTCGTCCTGGATGCTCGGGAGTCTGTAGGGCGAGTGACAGCTCGTCCTTCTCTCTGTCGTGTCGGAATGTGCCCTGAGAAGAGGCTTCCACTGCGTCCGTTAGTTG] [-] EMBL CB640228 [GCGGAATGTACAAGTCAANAATCATAAAACTACGAGCATACCTTGATTGATAAGTTCTTGAAGGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCATCAACGGGGCAAGTGGTTTCATCCTGGGTTTGCATGGCGTCCATGCTCTGTGATCCTACCTGCCCCGTTGAGGCGCAACTGCTACGATTGCCTGATGGGCTAACCATTGCAGGAGGAATGTACGGCTGGGGATTCTGGGACCGATGTGCGGCCATGCATTCATCCACCTTCCTTGCCACCTCCTCTTGCATGCTGAGCTCGTAGCTCGATACCCTGTACTCAAGATTTGCAATCTTCGCCTCGATATCTCTCTTACTCCTCATCCAACTCCTGTACGTGTGGATGTCCTCCTTGAATCTAATCTTCCAGGGAATCACGCCTTTCCCTCGTGTTCGTCCTGGATGCTCGGGAGTCTGTAGGGCGAGTGACAGCTCGTCCTTCTCTCTGTCGTGTCGGAATGTGCCCTGAGAAGAGGCTTCCACTGCGTCCGTTAGTTG] consensusID : consensus_7369#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [CCTTTCTTTTTCTTTTTTTTTTCCTTTCTCTTTTTCTCTTTTTCCTTTCTTTCCTCCCTCTCGGCTTCCTCCTTCCTTCCTCTCCTTTTCCTCCCGACGCCACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGGGTCCCCTGAGTGATGTCATCAACGGGACAGGTCGATCCGCCCTGTGTTTGCATGGCGTCCATGCTCTGGGATCCTACCTGCCCCGTTGAGGCGCACTTGCTACGGTTCCCTGAC] [+] EMBL CB639175 [CCTTTCTTTTTCTTTTTTTTTTCCTTTCTCTTTTTCTCTTTTTCCTTTCTTTCCTCCCTCTCGGCTTCCTCCTTCCTTCCTCTCCTTTTCCTCCCGACGCCACCTTTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGGGTCCCCTGAGTGATGTCATCAACGGGACAGGTCGATCCGCCCTGTGTTTGCATGGCGTCCATGCTCTGGGATCCTACCTGCCCCGTTGAGGCGCACTTGCTACGGTTCCCTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7369#0 CCCCTTCGACCAACTCAACTTCGACCTTCGAGTATCCTGCTGCGAATCGGCCTGCAGTGG 60 consensus_7369#1 ------------------------------------------------------------ consensus_7369#2 ------------------------------------------------------------ consensus_7369#0 TAAGTACCTGAAGGGTCCGTTGGGATGGCCATGCCCGACACCACCTTCATGTTGTGAGAG 120 consensus_7369#1 ------------------------------------------------------------ consensus_7369#2 ---------------CCTTTCTTTTTCTTTTTTTTTTCCTTTCTCTTTTTCTCTTTTTCC 45 consensus_7369#0 ATTATTTATTAGTAATCAACATATATAAGCAGCAACTAGCGGAATGGCTAAATCTTACCT 180 consensus_7369#1 ---------------GCGGAATGTACAAGTCAANAATCATAAAACTACGAG--CATACCT 43 consensus_7369#2 TTTCTTTCCTCCCTCTCGGCTTCCTCCTTCCTTCCTCTCCTTTTCCTCCCGACGCCACCT 105 * * * **** consensus_7369#0 TTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCAT 240 consensus_7369#1 TGATTGATAAGTTCTTGAAGGGAATATGCAGCTCACATGGTGTCCGCTGAGTGATGTCAT 103 consensus_7369#2 TTATTGATAAGTTCTTGAAAGGAATATGCAGCTCACATGGGGTCCCCTGAGTGATGTCAT 165 * ***************** ******************** **** ************** consensus_7369#0 CAACGGGACAGGTCGATTCGTCCTGTGTTTGCATGGCATCCATGCTCTGTGATCCTACCT 300 consensus_7369#1 CAACGGGGCAAGTGGTTTCATCCTGGGTTTGCATGGCGTCCATGCTCTGTGATCCTACCT 163 consensus_7369#2 CAACGGGACAGGTCGATCCGCCCTGTGTTTGCATGGCGTCCATGCTCTGGGATCCTACCT 225 ******* ** ** * * * **** *********** *********** ********** consensus_7369#0 GCCCCGTTGAGGCGCAGCTGCTACGGTTTCCTGACGGGCTCACCATTGCAGGAGGAATGG 360 consensus_7369#1 GCCCCGTTGAGGCGCAACTGCTACGATTGCCTGATGGGCTAACCATTGCAGGAGGAATGT 223 consensus_7369#2 GCCCCGTTGAGGCGCACTTGCTACGGTTCCCTGAC------------------------- 260 **************** ******* ** ***** consensus_7369#0 TCGGTTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCT 420 consensus_7369#1 ACGGCTGGGGATTCTGGGACCGATGTGCGGCCATGCATTCATCCACCTTCCTTGCCACCT 283 consensus_7369#2 ------------------------------------------------------------ consensus_7369#0 CCTCTTGCATGTTGAGTTCGTAGCTCGATACCCGGAACTCTAGGTCTGCAATCTTCGCCT 480 consensus_7369#1 CCTCTTGCATGCTGAGCTCGTAGCTCGATACCCTGTACTCAAGATTTGCAATCTTCGCCT 343 consensus_7369#2 ------------------------------------------------------------ consensus_7369#0 CGGTATCTCTCTTGCTCCTCATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAAACCAA 540 consensus_7369#1 CGATATCTCTCTTACTCCTCATCCAACTCCTGTACGTGTGGATGTCCTCCTTGAATCTAA 403 consensus_7369#2 ------------------------------------------------------------ consensus_7369#0 TCTTCCAAGGAATCACCCCTTTCCCTCGTGTTCGTCCTGGATGCTCTGGAGTCTGCAGGG 600 consensus_7369#1 TCTTCCAGGGAATCACGCCTTTCCCTCGTGTTCGTCCTGGATGCTCGGGAGTCTGTAGGG 463 consensus_7369#2 ------------------------------------------------------------ consensus_7369#0 CAAGTGTCAGCTCGTCCCTATCTCTGTCTGGTCGGAACGTGCCCTGAGAGGAGGCTTCCA 660 consensus_7369#1 CGAGTGACAGCTCGTCCTTCTCTCTGTCGTGTCGGAATGTGCCCTGAGAAGAGGCTTCCA 523 consensus_7369#2 ------------------------------------------------------------ consensus_7369#0 CTGCATCTGTTAGTCGTCGCGCAGCCTCTCGTATCTGATCGCCGAAGACCAGTGAGCCAT 720 consensus_7369#1 CTGCGTCCGTTAGTTG-------------------------------------------- 539 consensus_7369#2 ------------------------------------------------------------ consensus_7369#0 CAGCTGGGTTGAGCGTTCCACCGTGAGCGTAGTACCAGAACTTCGATCGTTCCGACCAAT 780 consensus_7369#1 ------------------------------------------------------------ consensus_7369#2 ------------------------------------------------------------ consensus_7369#0 TGGCTGTTGCCGGTTCGATACCCTCTCATC 810 consensus_7369#1 ------------------------------ consensus_7369#2 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||