These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 996 fasta sequence [CCAACGTCCACCAAACAAGCGGGCAAAAGATGGCAGCTCTTCAGCAGCTGATCAAAATGAGCAATCCAATGATACCGTGTCTGGTCTGTCAGGTATTAAGAGAGATCAGGAAGCTATATATGGAATGTCTGAGCAACTATCTGGTTTAAGTGAAGGAGATGATATGGATGATGGTGAATCAAGGCCACATGAAGCAGATGACAAAGAGAGCGACAGCAAGAAAAGGAATATACAAATTTCTTCACAGAGGACTTCAGCGGAAGCTAAGATTATTGTGCAAACAACCAGTGAGGTTGATCTTTTGGATGATGGTTATAGATGGCGCAAGTATGGGCAGAAGGTGGTTAAAGGAAACCCTCATCCAAGGAGTTACTACAAGTGCACCTATGCTGGATGTAATGTTAGGAAACACATTGAGAGGGCTTCGTCAGACCCTAAGGCTGTCATAACAACTTATGAAGGAAAACATAACCATGAACCACCGGTTGGTAGGGGAAACAACCAGAATGCGGGAAATGCGGCCCCTTCAAGCAGTGCACAACAGAATATGCAGAATTTGTCTAGTAATCAAGCTTCACTTACAATGGCAGACTTCAACAACATTAACCAGAGGCCAATTGGTGTCTTACAGTTCAAAAGCGAAGAATAACACCGTCAACTGACTTTCTTGTGACCCCGGTTGCTGAAGTGGCACACTGGTATTTGGTTGATTTCTTCAGGCAAATATTGGATGCCTTGCATTCTAATAGTCACACTGTTCCAAACGTTCAAGAATAATACAACAATATCATTGTCTGCAATTNTTCTACCGGTACACAGAATTACTGTAACGACACCTAACCCTTCTAGCTTGTACATGCTGGTACTTTGAGCATAAACTCAATATAACAACACCTATGTGGATGTGCAAATAGACCGTCGTAAACATATCATGTTTACTTTGGAATATGGTAATAAACAAGCTCCTTGCTTTGTATTAGAATGGATATAAAAATG] [+] EMBL BE040192 [CCAACGTCCACCAAACAAGCGGGCAAAAGATGGCAGCTCTTCAGCAGCTGATCAAAATGAGCAATCCAATGATACCGTGTCTGGTCTGTCAGGTATTAAGAGAGATCAGGAAGCTATATATGGAATGTCTGAGCAACTATCTGGTTTAAGTGAAGGAGATGATATGGATGATGGTGAATCAAGGCCACATGAAGCAGATGACAAAGAGAGCGACAGCAAGAAAAGGAATATACAAATTTCTTCACAGAGGACTTCAGCGGAAGCTAAGATTATTGTGCAAACAACCAGTGAGGTTGATCTTTTGGATGATGGTTATAGATGGCGCAAGTATGGGCAGAAGGTGGTTAAAGGAAACCCTCATCCAAGGAGTTACTACAAGTGCACCTATGCTGGATGTAATGTTAGGAAACACATTGAGAGGGCTTCGTCAGACCCTAAGGCTGTCATAACAACTTATGAAGGAAAACATAACCATGAACCACCGGTTGGTAGGGGAAACAACCAGAATGCGGGAAATGCGGCCCCTTCAAGCAGTGCACAACAGAATATGCAGAATTTGTCTAGTAATCAAGCTTCACTTACAATGGCAGACTTCAACAACATTAACCAGAGGCCAATTGGTGTCTTACAGTTCAAAAGCGAAGAATAACACCGTCAACTGACTTTCTTGTGACCCCGGTTGCTGAAGTGGCACACTGGTATTTGGTTGATTTCTTCAGGCAAATATTGGATGCCTTGCATTCTAATAGTCACACTGTTCCAAACGTTCAAGAATAATACAACAATATCATTGTCTGCAATTNTTCTACCGGTACACAGAATTACTGTAACGACACCTAACCCTTCTAGCTTGTACATGCTGGTACTTTGAGCATAAACTCAATATAACAACACCTATGTGGATGTGCAAATAGACCGTCGTAAACATATCATGTTTACTTTGGAATATGGTAATAAACAAGCTCCTTGCTTTGTATTAGAATGGATATAAAAATG] consensusID : consensus_737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [TCAACTGACTTTCTTGGGACCCCGGTTGTCTGAAGTGCACACCTGGTATTTGTTGATTTCTTCAGCAAATATTGGATGCCTGCAATTCTAATAGTCACACTGTTCCAACGTTCAAGAAGTAATACAACAATATCATTGTCTCAATTTTCCTACCGATACACAGAATTACTGAAACGACACCTAGCCTTTCTAGCTTGTACATGCTGTTACTTTGAAGCATAAACTCAATATAACACCAGCTAGGTGGATGTCAGATGGACGGGTCGTAATCATATACATGTTTACTTTGTAATTTGTTTATCAATCAAGCTCCTGCTTGTAATAAGATTGAATAGAGAAGTGAAATGTACAGATGCTTTCCCGTATTTCTGTATATGTTGTAATTTGTAGAATAGTAAATCAACAAAGAAGGTATACTGTGGACATATATTAAGATTCTTTCTCAACTTTAATCCCAAAAA] [+] EMBL BI813534 [TCAACTGACTTTCTTGGGACCCCGGTTGTCTGAAGTGCACACCTGGTATTTGTTGATTTCTTCAGCAAATATTGGATGCCTGCAATTCTAATAGTCACACTGTTCCAACGTTCAAGAAGTAATACAACAATATCATTGTCTCAATTTTCCTACCGATACACAGAATTACTGAAACGACACCTAGCCTTTCTAGCTTGTACATGCTGTTACTTTGAAGCATAAACTCAATATAACACCAGCTAGGTGGATGTCAGATGGACGGGTCGTAATCATATACATGTTTACTTTGTAATTTGTTTATCAATCAAGCTCCTGCTTGTAATAAGATTGAATAGAGAAGTGAAATGTACAGATGCTTTCCCGTATTTCTGTATATGTTGTAATTTGTAGAATAGTAAATCAACAAAGAAGGTATACTGTGGACATATATTAAGATTCTTTCTCAACTTTAATCCCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_737#0 CCAACGTCCACCAAACAAGCGGGCAAAAGATGGCAGCTCTTCAGCAGCTGATCAAAATGA 60 consensus_737#1 ------------------------------------------------------------ consensus_737#0 GCAATCCAATGATACCGTGTCTGGTCTGTCAGGTATTAAGAGAGATCAGGAAGCTATATA 120 consensus_737#1 ------------------------------------------------------------ consensus_737#0 TGGAATGTCTGAGCAACTATCTGGTTTAAGTGAAGGAGATGATATGGATGATGGTGAATC 180 consensus_737#1 ------------------------------------------------------------ consensus_737#0 AAGGCCACATGAAGCAGATGACAAAGAGAGCGACAGCAAGAAAAGGAATATACAAATTTC 240 consensus_737#1 ------------------------------------------------------------ consensus_737#0 TTCACAGAGGACTTCAGCGGAAGCTAAGATTATTGTGCAAACAACCAGTGAGGTTGATCT 300 consensus_737#1 ------------------------------------------------------------ consensus_737#0 TTTGGATGATGGTTATAGATGGCGCAAGTATGGGCAGAAGGTGGTTAAAGGAAACCCTCA 360 consensus_737#1 ------------------------------------------------------------ consensus_737#0 TCCAAGGAGTTACTACAAGTGCACCTATGCTGGATGTAATGTTAGGAAACACATTGAGAG 420 consensus_737#1 ------------------------------------------------------------ consensus_737#0 GGCTTCGTCAGACCCTAAGGCTGTCATAACAACTTATGAAGGAAAACATAACCATGAACC 480 consensus_737#1 ------------------------------------------------------------ consensus_737#0 ACCGGTTGGTAGGGGAAACAACCAGAATGCGGGAAATGCGGCCCCTTCAAGCAGTGCACA 540 consensus_737#1 ------------------------------------------------------------ consensus_737#0 ACAGAATATGCAGAATTTGTCTAGTAATCAAGCTTCACTTACAATGGCAGACTTCAACAA 600 consensus_737#1 ------------------------------------------------------------ consensus_737#0 CATTAACCAGAGGCCAATTGGTGTCTTACAGTTCAAAAGCGAAGAATAACACCGTCAACT 660 consensus_737#1 ------------------------------------------------------TCAACT 6 ****** consensus_737#0 GACTTTCTTGTGACCCCGGTTG-CTGAAGTGGCACAC-TGGTATTTGGTTGATTTCTTCA 718 consensus_737#1 GACTTTCTTGGGACCCCGGTTGTCTGAAGTG-CACACCTGGTATTTG-TTGATTTCTTCA 64 ********** *********** ******** ***** ********* ************ consensus_737#0 GGCAAATATTGGATGCCTTGCATTCTAATAGTCACACTGTTCCAAACGTTCAAGAA-TAA 777 consensus_737#1 G-CAAATATTGGATGCCTGCAATTCTAATAGTCACACTGTTCCAA-CGTTCAAGAAGTAA 122 * **************** ************************ ********** *** consensus_737#0 TACAACAATATCATTGTCTGCAATTNTTCTACCGGTACACAGAATTACTGTAACGACACC 837 consensus_737#1 TACAACAATATCATTGTCT-CAATTTTCCTACCGATACACAGAATTACTGAAACGACACC 181 ******************* ***** * ****** *************** ********* consensus_737#0 TAACCCTTCTAGCTTGTACATGCTGGTACTTTGA-GCATAAACTCAATATAACAACACCT 896 consensus_737#1 TAGCCTTTCTAGCTTGTACATGCTGTTACTTTGAAGCATAAACTCAATATAACACCAGCT 241 ** ** ******************* ******** ******************* ** ** consensus_737#0 ATGTGGATGTGCAAATAGACCG-TCGTAAACATAT-CATGTTTACTTTGGAATATGGTAA 954 consensus_737#1 AGGTGGATGT-CAGATGGACGGGTCGTAATCATATACATGTTTACTTTGTAATTTGTTTA 300 * ******** ** ** *** * ****** ***** ************* *** ** * * consensus_737#0 TAAACAAGCTCCTTGCTTTGTATTAGAATGGATATAAAAATG------------------ 996 consensus_737#1 TCAATCAAGCTCCTGCTTGTAATAAGATTGAATAGAGAAGTGAAATGTACAGATGCTTTC 360 * ** * * ***** ** *** ** *** * ** ** consensus_737#0 ------------------------------------------------------------ consensus_737#1 CCGTATTTCTGTATATGTTGTAATTTGTAGAATAGTAAATCAACAAAGAAGGTATACTGT 420 consensus_737#0 ----------------------------------------- consensus_737#1 GGACATATATTAAGATTCTTTCTCAACTTTAATCCCAAAAA 461 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||