|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1052 fasta sequence
[TCCTCGCGCGGCAGCCGCAGCCGCAGCCGCAGCAGCTGAGGCTGAGGTTGCAGCGGGTCGCCGCGTTCACCGGAGTTGGAGGCGGGGGGCGGCGGCTGATGGTGGCCGCGGCGGCCAAGAAGAGGAGGGGGAAGGGCGGGGAGGGGGAGGAGGAGGAGGAGAGGGTGGACACCCACAGCTTCGCGCCCAAGGCCGGCGAGGCCACCGGGCCGTTCCCCGAGGCCGTCCTGCTCAGGAAGAAAATGGTGAAAGATGATGGTCAAGTTGCACCTGAATTTGCTGATGCAGATGAAGAAAAGCTATATGAGTTTCTTAATATCCAAATGGAGAGTGATTTAAATCTGAAAAGAATGCGGCATTATGAAGTGGTTTACCTAATTCATGAGGATCGTGTGGAAGAAGTTGAAGATGTTGTATCAAAAGTACAAGATTTTGTCAGAGAGAAGAAAGGAAGGATATGGAGGCTTAACAATTGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTTGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGATAAGGACGAGAGAATCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGCTCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCAAAGAGGAGCAGGAGCCGGAGGAGGATTGGGATGACAAGGGTGAAATGGAGAACGCTGGTTATGAAGATGATGATGAACCTGAAATTATTCTTGTTGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCTGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTCTTAGTGTAAGACTACCCCTTTTTTTCTATACAAAGGACCCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTGCATTCCATGTATCAAAAAAAAAA]
[+] EMBL BU673633 [TCCTCGCGCGGCAGCCGCAGCCGCAGCCGCAGCAGCTGAGGCTGAGGTTGCAGCGGGTCGCCGCGTTCACCGGAGTTGGAGGCGGGGGGCGGCGGCTGATGGTGGCCGCGGCGGCCAAGAAGAGGAGGGGGAAGGGCGGGGAGGGGGAGGAGGAGGAGGAGAGGGTGGACACCCACAGCTTCGCGCCCAAGGCCGGCGAGGCCACCGGGCCGTTCCCCGAGGCCGTCCTGCTCAGGAAGAAAATGGTGAAAGATGATGGTCAAGTTGCACCTGAATTTGCTGATGCAGATGAAGAAAAGCTATATGAGTTTCTTAATATCCAAATGGAGAGTGATTTAAATCTGAAAAGAATGCGGCATTATGAAGTGGTTTACCTAATTCATGAGGATCGTGTGGAAGAAGTTGAAGATGTTGTATCAAAAGTACAAGATTTTGTCAGAGAGAAGAAAGGAAGGATATGGAGGCTTAACAATTGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTTGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGATNAGGACGAGAGAATCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGGTCT CCCCAGCAGAGTTCCACACCTTGAGAGC ]
[+] EMBL AK060401 [ ACAATTGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTTGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGATAAGGACGAGAGAATCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGCTCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCAAAGAGGAGCAGGAGCCGGAGGAGGATTGGGATGACAAGGGTGAAATGGAGAACGCTGGTTATGAAGATGATGATGAACCTGAAATTATTCTTGTTGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCTGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTCTTAGTGTAAGACTACCCCTTTTTTTCTATACAAAGGACCCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTG ]
[+] EMBL AU070811 [ TGCTAGATAAGGACGAGAGAATCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGCTCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCAAAGAGGAGCAGGAGCCGGAGGAGGATTGGGATGACAAGGGTGAAATGGAGAACGCTGGTTATGAAGATGATGATGAACCTGAAATTATTCTTGTTGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCTGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTCTTAGTGTAAGACTACCCCTTTTTTTCTATACAAAGGACCCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTGCATTCCATGTATCAAAAAAAAAA]
consensusID : consensus_7372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[GGACGAGACAAGGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTCGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGACAAGGACGAGAGAATCATTAGGCACCTCGTGATGAAACGGGATGAGGCGATCACTGAAGATTGCCCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCGAAGAGAAGCAGGAGCAGGAGGACTGGGATGGAAATGGTGAATTGGAGACTGCTGGTTATGAAGATGATGATGCTGAAGCTGATGATGAACCTGAAATTATTCTTGTCGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCCGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTGTAAGACTACCCCTTTTTTTCTATAGAAAGGACCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTGCATTCCATGTA]
[+] EMBL CA765076 [GGACGAGACAAGGGGGACTGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACTTCGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGACAAGGACGAGAGAATCATTAGGCACCTCGTGATGAAACGGGATGAGGCGATCACTGAAGATTGCCCTCCCCCACCAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCGAAGAGAAGCAGGAGCAGGAGGACTGGGATGGAAATGGTGAATTGGAGACTGCTGGTTATGAAGATGATGATGCTGAAGCTGATGATGAACCTGAAATTATTCTTGTCGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCCGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTGTAAGACTACCCCTTTTTTTCTATAGAAAGGACCACCTGTATGAAAATATGACTACAAAGTAATCTCAGCTGAGTGCATTCCATGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7372#0 TCCTCGCGCGGCAGCCGCAGCCGCAGCCGCAGCAGCTGAGGCTGAGGTTGCAGCGGGTCG 60
consensus_7372#1 ------------------------------------------------------------
consensus_7372#0 CCGCGTTCACCGGAGTTGGAGGCGGGGGGCGGCGGCTGATGGTGGCCGCGGCGGCCAAGA 120
consensus_7372#1 ------------------------------------------------------------
consensus_7372#0 AGAGGAGGGGGAAGGGCGGGGAGGGGGAGGAGGAGGAGGAGAGGGTGGACACCCACAGCT 180
consensus_7372#1 ------------------------------------------------------------
consensus_7372#0 TCGCGCCCAAGGCCGGCGAGGCCACCGGGCCGTTCCCCGAGGCCGTCCTGCTCAGGAAGA 240
consensus_7372#1 ------------------------------------------------------------
consensus_7372#0 AAATGGTGAAAGATGATGGTCAAGTTGCACCTGAATTTGCTGATGCAGATGAAGAAAAGC 300
consensus_7372#1 ------------------------------------------------------------
consensus_7372#0 TATATGAGTTTCTTAATATCCAAATGGAGAGTGATTTAAATCTGAAAAGAATGCGGCATT 360
consensus_7372#1 ------------------------------------------------------------
consensus_7372#0 ATGAAGTGGTTTACCTAATTCATGAGGATCGTGTGGAAGAAGTTGAAGATGTTGTATCAA 420
consensus_7372#1 ------------------------------------------------------------
consensus_7372#0 AAGTACAAGATTTTGTCAGAGAGAAGAAAGGAAGGATATGGAGGCTTAACAATTGGGGAC 480
consensus_7372#1 -----------------------------------------GGACGAGACAAG-GGGGAC 18
* * **** ******
consensus_7372#0 TGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACT 540
consensus_7372#1 TGCGTAGACTTGCTTACAAAATAAAGAAAGCAAGACATGCCAACTACATCTTAATGAACT 78
************************************************************
consensus_7372#0 TTGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGATAAGGACGAGAGAA 600
consensus_7372#1 TCGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGACAAGGACGAGAGAA 138
* ******************************************** *************
consensus_7372#0 TCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGCTCTCCCCCAC 660
consensus_7372#1 TCATTAGGCACCTCGTGATGAAACGGGATGAGGCGATCACTGAAGATTGCCCTCCCCCAC 198
********** ***************** ***************** *** *********
consensus_7372#0 CAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATG 720
consensus_7372#1 CAGAGTTCCACACCCTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATG 258
************************************************************
consensus_7372#0 AAGATGATGGCAAAGAGGAGCAGGAGCCGGAGGAGGATTGGGATGACAAGGGTGAAATGG 780
consensus_7372#1 AAGATGATGGCGAAGAGAAGCAGGAGC---AGGAGGACTGGGATGGAAATGGTGAATTGG 315
*********** ***** ********* ******* ******* ** ****** ***
consensus_7372#0 AGAACGCTGGTTATGAAGATGATGATG---------------AACCTGAAATTATTCTTG 825
consensus_7372#1 AGACTGCTGGTTATGAAGATGATGATGCTGAAGCTGATGATGAACCTGAAATTATTCTTG 375
*** ********************** ******************
consensus_7372#0 TTGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAG 885
consensus_7372#1 TCGATGAAGTCGAGCGCGATAACAACGAAAACATTAGAAGAAGGAACAGGACAATGAAAG 435
* **********************************************************
consensus_7372#0 TAGAGAAGTACGCAGCTGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAG 945
consensus_7372#1 TAGAGAAGTACGCAGCCGAGAAAGTCTTGAGGTAGCTTAGATGTCTCTGTTTTCATTTAG 495
**************** *******************************************
consensus_7372#0 TCTTAGTGTAAGACTACCCCTTTTTTTCTATACAAAGGACCCACCTGTATGAAAATATGA 1005
consensus_7372#1 T------GTAAGACTACCCCTTTTTTTCTATAGAAAGGACC-ACCTGTATGAAAATATGA 548
* ************************* ******** ******************
consensus_7372#0 CTACAAAGTAATCTCAGCTGAGTGCATTCCATGTATCAAAAAAAAAA 1052
consensus_7372#1 CTACAAAGTAATCTCAGCTGAGTGCATTCCATGTA------------ 583
***********************************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||