|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1386 fasta sequence
[CGGCGGCGGCCCAGTTTATCCGTAGCATCCACCGCACTGGCAAATCAAGCGGCAGTGACGCAGAGTATTAGCAGCAGGGGAGCCCATGGCGTCGCCGGGGAGCAGCGGGCGGTGCTCGAGGACCCCGGGGTTCCCGGCGGGGCCGCTCGGCGGCGGAGGGCGCGCGGTGCCGGCGGTGGGGCTCGGAACGGCGTCGCTCCGGTCCGTGGGGGAGGAGAGCTTCAGGGGCGCCCTGCTCGCCGCGCTGGAGGTCGGGTACCGCCACATCGACACCGCATCGGTGTACGGCTCCGAGCGGGTCGTCGGCGAGGCCGTGGCCGGGGCGGCGCGGCGCGGGGTCATCGCGTGCCGCGAGGAGGTGTTCGTGACCACCAAGGTGTGGTGCACGCAGTGCCACCCGGACCTCGTGCTCCCCTCCCTCAGGGAGAGCTTGCAGAACCTTCAAATGGAATATGTTGATATGTACTTGGTCCACTGGCCAATGAGCGTGAAGCCCACTAAACCTCACTACCCAATGAAAAGAGAGGATATCATGCCAATGGATTTGAGAGGCGTATGGCAAGCAATGGAGGAATGTCACCAGCTTGGCCTTGCAAAAATGATTGGTGTTAGCAATTTCACTACAAAAAAATTGCAAGAACTACTTGCCTTCGCAAAAATTCCACCAGCAGTGAATCAGGTTGAGTTAAATCCAGTCTGGCAGCAGAAGAAACTGATGGAGTTCTGCAAAGCGAAAGGCATTCATGTGACTGCTTACTTTCCCCTGGGAGGCCGGCATAGTACATCCACAGTCAATCCAGTCCTGGATTCAGATGTTTTGAAAGAGATTGCCGCAGCCAAGGGGAAGTCAGTGGCTCAGATCTCACTTAGGTGGATCTACGAGCAAGGAGCAAGCATGGTGACCACGAGTACGAAAAGGGAGAGGCTTAAGGAGAACATCGATATCTTCGATTGGCAATTGAGCGATGAAGATCGGCTCAAGATAAGTCAGATTCCACAGCACAAGACGGTCAGCGTGCTGTCGATC-CTCTGCCCCGATGGTGTCTCCAGCGTTGAGTTGTCGGAGGTTGACGTTGTTGAAGTGTAGCGGTCGTTTTCGCGTTCCTGTTCACAGTAAACTGAACATTTAGGGCATGTTTAGTTCCCAAAAAGTTTTTCTCAAAAAAATCACATCGAATCCTTGTAGACATGTATGGAGCATTAAATATAGATAAAAAAAACTAATTGGACAGTTATGATGGAAATCACGAGACGAATCTTTTGAGCCTAATTAGTCCATGATTAGCCATAAGTGCTACAGTAACCCACATGTGCTAATGGTGGATTAATTAGTCTCAAAAGATTCGTTTCACGGTTTCCAGGCGAGTTATGAAATTAGTTTTTTAA]
[+] EMBL AK064090 [CGGCGGCGGCCCAGTTTATCCGTAGCATCCACCGCACTGGCAAATCAAGCGGCAGTGACGCAGAGTATTAGCAGCAGGGGAGCCCATGGCGTCGCCGGGGAGCAGCGGGCGGTGCTCGAGGACCCCGGGGTTCCCGGCGGGGCCGCTCGGCGGCGGAGGGCGCGCGGTGCCGGCGGTGGGGCTCGGAACGGCGTCGCTCCGGTCCGTGGGGGAGGAGAGCTTCAGGGGCGCCCTGCTCGCCGCGCTGGAGGTCGGGTACCGCCACATCGACACCGCATCGGTGTACGGCTCCGAGCGGGTCGTCGGCGAGGCCGTGGCCGGGGCGGCGCGGCGCGGGGTCATCGCGTGCCGCGAGGAGGTGTTCGTGACCACCAAGGTGTGGTGCACGCAGTGCCACCCGGACCTCGTGCTCCCCTCCCTCAGGGAGAGCTTGCAGAACCTTCAAATGGAATATGTTGATATGTACTTGGTCCACTGGCCAATGAGCGTGAAGCCCACTAAACCTCACTACCCAATGAAAAGAGAGGATATCATGCCAATGGATTTGAGAGGCGTATGGCAAGCAATGGAGGAATGTCACCAGCTTGGCCTTGCAAAAATGATTGGTGTTAGCAATTTCACTACAAAAAAATTGCAAGAACTACTTGCCTTCGCAAAAATTCCACCAGCAGTGAATCAGGTTGAGTTAAATCCAGTCTGGCAGCAGAAGAAACTGATGGAGTTCTGCAAAGCGAAAGGCATTCATGTGACTGCTTACTTTCCCCTGGGAGGCCGGCATAGTACATCCACAGTCAATCCAGTCCTGGATTCAGATGTTTTGAAAGAGATTGCCGCAGCCAAGGGGAAGTCAGTGGCTCAGATCTCACTTAGGTGGATCTACGAGCAAGGAGCAAGCATGGTGACCACGAGTACGAAAAGGGAGAGGCTTAAGGAGAACATCGATATCTTCGATTGGCAATTGAGCGATGAAGATCGGCTCAAGATAAGTCAGATTCCACAGCACAAGACGGTCAGCGTGCTGTCGATC CTCTGCCCCGATGGTGTCTCCAGCGTTGAGTTGTCGGAGGTTGACGTTGTTGAAGTGTAGCGGTCGTTTTCGCGTTCCTGTTCACAGTAAACTGAACATTTAGGGCATGTTTAGTTCCCAAAAAGTTTTTCTCAAAAAAATCACATCGAATCCTTGTAGACATGTATGGAGCATTAAATATAGATAAAAAAAACTAATTGGACAGTTATGATGGAAATCACGAGACGAATCTTTTGAGCCTAATTAGTCCATGATTAGCCATAAGTGCTACAGTAACCCACATGTGCTAATGGTGGATTAATTAGTCTCAAAAGATTCGTTTCACGGTTTCCAGGCGAGTTATGAAATTAGTTTTTTAA]
[-] EMBL CB664329 [ TACTTGGTCCACTGGCCAATGAGCGTGAAGCCCACTAAACCTCACTACCCAATGAAAAGAGAGGATATCATGCCAATGGATTTGAGAGGCGTATGGCAAGCAATGGAGGAATGTCACCAGCTTGGCCTTGCAAAAATGATTGGTGTTAGCAATTTCACTACAAAAAAATTGCAAGAACTACTTGCCTTCGCAAAAATTCCACCAGCAGTGAATCAGGTTGAGTTAAATCCAGTCTGGCAGCAGAAGAAACTGATGGAGTTCTGCAAAGCGAAAGGCATTCATGTGACTGCTTACTTTCCCCTGGGAGGCCGGCATAGTACATCCACAGTCAATCCAGTCCTGGATTCAGATGTTCTGAAAGAGATTGCCGCAGCCAAGGGGAAGTCAGTGGCTCAGATCTCACTTAGGTGGATCTACGAGCAAGGAGCAAGCATGGTGACCACGAGTACGAAAAGGGAGAGGCTTAAGGAGAACATCGATATCTTCGATTGGCAATTGAGCGATGAAGATCGGCTCAAGATAAGTCAGATTCCACAGCACAAGACGGTCAGCGTGCTGTCGATC CTCTGCCCCGATGGTGTCTCCAGCGTTGAGTTGTCGGAGGTTGACGTTGTTGAAGTGTAGCGGTCGTTTTCGCGTTCCTGTTCACAGTAAACTGAACATTTAGGGCATGTTTAGTTCCCAAAAAGTTTTTCTCAAAAAAATCACATCGAATCCTTGTAGACATGTATGGAGCATTAAATATAGATAAAAAAAACTAATTGGACAG ]
[+] EMBL BQ908602 [ ccgGAGCGATGAAGATCGGCTCAAGATAAGTCAGATTCCACAGCACAAGACGGTCAGCGTGCTGTCGATCACTCTGCCCCGATGGTGTCTCCAGCGTTGAGTTGTCGGAGGTTGACGTTGTTGAAGTGTAGCGGTCGTTTTCGCGTTCCTGTTCACAGTAAACTGAACATTTAGGGCATGTTTAGTTCCCAAAAAGTTTTTCTCAAAAAAATCACATCGAATCCTTGTAGAaaaaaaaaa ]
consensusID : consensus_7377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[CAGCAGGGGAGCCCATGGCGTCGCCGGGGAGCAGCGGGCGGTGCTCGAGGACCCCGGGGTTCCCGGCGGGGCCGCTCGGCGGCGGAGGGCGCGCGGTGCCGGCGGTGGGGCTCGGAACGGCGTCGCTCCGGTCCGTGGGGGAGGAGAGCTTCAGGGGCGCCCTGCTCGCCGCGCTGGAGGTCGGGTACCGCCACATCGACACCGCATCGGTGTACGGCTCCGAGCGGGTCGTCGGCGAGGCCGTGGCCGGGGCGGCGCGGCGCGGGGTCATCGCGTGCCGCGAGGAGGTGTTCGTGACCACCAAGGTGTGGTGCACGCAGTGCCACCCGGACCTCGTGCTCCCCTCCCTCAGGGAGAGCTTGCAGTAAGGAAACAAGAGGCTTGGGTTCTTTCTTCAGTTTTCTTTCTCTTGTTGTCCTTTTACCATGTCAATACACCATACTCTAGTAGTCATCGTGGTAAAATATTTGGTTCTTTAAACAGAGACTTGCATCATGCTAACTGGCATGCAGCTTACCACTTTTAGATGTTCATTTTATTACGGCAACTAAGAACATATGTAAGAAATGTGCAGAAGAAATGAATCTAAAAGTTGATTATTACATTGAGAACCAACTCTTCAGTAGTTGAAGTCCACCACTACAACTGTGTAGATACATGTTTCGTTCAATTCTTTTTTAACAATGACATTTTATTCATAGGTGAACATATGTAACATTGGTACTTTTTTGGAAT]
[+] EMBL CB664328 [CAGCAGGGGAGCCCATGGCGTCGCCGGGGAGCAGCGGGCGGTGCTCGAGGACCCCGGGGTTCCCGGCGGGGCCGCTCGGCGGCGGAGGGCGCGCGGTGCCGGCGGTGGGGCTCGGAACGGCGTCGCTCCGGTCCGTGGGGGAGGAGAGCTTCAGGGGCGCCCTGCTCGCCGCGCTGGAGGTCGGGTACCGCCACATCGACACCGCATCGGTGTACGGCTCCGAGCGGGTCGTCGGCGAGGCCGTGGCCGGGGCGGCGCGGCGCGGGGTCATCGCGTGCCGCGAGGAGGTGTTCGTGACCACCAAGGTGTGGTGCACGCAGTGCCACCCGGACCTCGTGCTCCCCTCCCTCAGGGAGAGCTTGCAGTAAGGAAACAAGAGGCTTGGGTTCTTTCTTCAGTTTTCTTTCTCTTGTTGTCCTTTTACCATGTCAATACACCATACTCTAGTAGTCATCGTGGTAAAATATTTGGTTCTTTAAACAGAGACTTGCATCATGCTAACTGGCATGCAGCTTACCACTTTTAGATGTTCATTTTATTACGGCAACTAAGAACATATGTAAGAAATGTGCAGAAGAAATGAATCTAAAAGTTGATTATTACATTGAGAACCAACTCTTCAGTAGTTGAAGTCCACCACTACAACTGTGTAGATACATGTTTCGTTCAATTCTTTTTTAACAATGACATTTTATTCATAGGTGAACATATGTAACATTGGTACTTTTTTGGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7377#0 CGGCGGCGGCCCAGTTTATCCGTAGCATCCACCGCACTGGCAAATCAAGCGGCAGTGACG 60
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 CAGAGTATTAGCAGCAGGGGAGCCCATGGCGTCGCCGGGGAGCAGCGGGCGGTGCTCGAG 120
consensus_7377#1 -----------CAGCAGGGGAGCCCATGGCGTCGCCGGGGAGCAGCGGGCGGTGCTCGAG 49
*************************************************
consensus_7377#0 GACCCCGGGGTTCCCGGCGGGGCCGCTCGGCGGCGGAGGGCGCGCGGTGCCGGCGGTGGG 180
consensus_7377#1 GACCCCGGGGTTCCCGGCGGGGCCGCTCGGCGGCGGAGGGCGCGCGGTGCCGGCGGTGGG 109
************************************************************
consensus_7377#0 GCTCGGAACGGCGTCGCTCCGGTCCGTGGGGGAGGAGAGCTTCAGGGGCGCCCTGCTCGC 240
consensus_7377#1 GCTCGGAACGGCGTCGCTCCGGTCCGTGGGGGAGGAGAGCTTCAGGGGCGCCCTGCTCGC 169
************************************************************
consensus_7377#0 CGCGCTGGAGGTCGGGTACCGCCACATCGACACCGCATCGGTGTACGGCTCCGAGCGGGT 300
consensus_7377#1 CGCGCTGGAGGTCGGGTACCGCCACATCGACACCGCATCGGTGTACGGCTCCGAGCGGGT 229
************************************************************
consensus_7377#0 CGTCGGCGAGGCCGTGGCCGGGGCGGCGCGGCGCGGGGTCATCGCGTGCCGCGAGGAGGT 360
consensus_7377#1 CGTCGGCGAGGCCGTGGCCGGGGCGGCGCGGCGCGGGGTCATCGCGTGCCGCGAGGAGGT 289
************************************************************
consensus_7377#0 GTTCGTGACCACCAAGGTGTGGTGCACGCAGTGCCACCCGGACCTCGTGCTCCCCTCCCT 420
consensus_7377#1 GTTCGTGACCACCAAGGTGTGGTGCACGCAGTGCCACCCGGACCTCGTGCTCCCCTCCCT 349
************************************************************
consensus_7377#0 CAGGGAGAGCTTGCAGAACCTTCAAATGGAATATGTTGATATGTACTTGGTCCACTGGCC 480
consensus_7377#1 CAGGGAGAGCTTGCAGTAAGGAAACAAGAGGCTTGG-GTTCTTTCTTCAGTTTTCTTTCT 408
**************** * * * * ** * * * * * ** ** *
consensus_7377#0 AATGAGCGTGAAGCCCACTAA--ACCTCACTACCCAATGAAAAGAGAGGATATCATGCCA 538
consensus_7377#1 ------CTTGTTGTCCTTTTACCATGTCAATACACCAT-ACTCTAGTAGTCATCGTGGTA 461
* ** * ** * * * *** *** * ** * ** * *** ** *
consensus_7377#0 ATGGATTTGAGAGGCGTATGGCAAGCAATGGAGGAATGTCACCAGCTTGGCCTTGCAAAA 598
consensus_7377#1 AAATATTTGGT--TCTTTAAACAGAGACTTGCATCATGCTAACTGGCATGCAGCTTACCA 519
* ***** * * ** * * * *** * * * ** * *
consensus_7377#0 ATGATTGGTGTTAGCAATTTCACTACAA---AAAAATTGCAAGAACTACTTGCCTTCGCA 655
consensus_7377#1 CTTTTAGATGTTCATTTTATTACGGCAACTAAGAACATATGTAAGAAATGTGCAGAAGAA 579
* * * **** * * ** *** * ** * * * *** * *
consensus_7377#0 AAAATTCCACCAGCAGTGAATCAGGTTGAGTTAAATCCAGTCTGGCAGCAGAAGAAACTG 715
consensus_7377#1 ATGAATCTAAAAGTTGATTATTACATTGAG----AACCAACTCTTCAGTAGTTGAAGTCC 635
* * ** * ** * ** * ***** * *** *** ** ***
consensus_7377#0 ATGGAGTTCTGCAAAGCGAAAGGCATTCATGTGACTGCTTACTTTCCCCTGGGAGGCCGG 775
consensus_7377#1 ACCA----CTACAA--CTGTGTAGATACATGTTTCGTTCAATTCTTTTTTAACAA--TGA 687
* ** *** * ** ***** * * * * * * *
consensus_7377#0 CATAGTACATCCACAGTCAATCCAGTCCTGGATTCAGATGTTTTGAAAGAGATTGCCGCA 835
consensus_7377#1 CAT--TTTATTCATAGGTGAACATATGTAACATTGGTACTTTTTTGGAAT---------- 735
*** * ** ** ** * * * *** * **** *
consensus_7377#0 GCCAAGGGGAAGTCAGTGGCTCAGATCTCACTTAGGTGGATCTACGAGCAAGGAGCAAGC 895
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 ATGGTGACCACGAGTACGAAAAGGGAGAGGCTTAAGGAGAACATCGATATCTTCGATTGG 955
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 CAATTGAGCGATGAAGATCGGCTCAAGATAAGTCAGATTCCACAGCACAAGACGGTCAGC 1015
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 GTGCTGTCGATCCTCTGCCCCGATGGTGTCTCCAGCGTTGAGTTGTCGGAGGTTGACGTT 1075
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 GTTGAAGTGTAGCGGTCGTTTTCGCGTTCCTGTTCACAGTAAACTGAACATTTAGGGCAT 1135
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 GTTTAGTTCCCAAAAAGTTTTTCTCAAAAAAATCACATCGAATCCTTGTAGACATGTATG 1195
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 GAGCATTAAATATAGATAAAAAAAACTAATTGGACAGTTATGATGGAAATCACGAGACGA 1255
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 ATCTTTTGAGCCTAATTAGTCCATGATTAGCCATAAGTGCTACAGTAACCCACATGTGCT 1315
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 AATGGTGGATTAATTAGTCTCAAAAGATTCGTTTCACGGTTTCCAGGCGAGTTATGAAAT 1375
consensus_7377#1 ------------------------------------------------------------
consensus_7377#0 TAGTTTTTTAA 1386
consensus_7377#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||