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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1460 fasta sequence
[AAGTAGCAACGCAGCTCATCAGTGTCAAGATGGCTACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTCATGACCCCTCTCTCTCCTTGATATGGAACTTGAGCTTAGTCTAGGGGACTCTCCAGCTCCAGTGAAGGCCACCATTGCGCCTACACCGGTGCTTATACCAACATGCATGGGCGATGAAGAAGACCTGGAGCTTGTGCTTGGAGTAAGAGCAACTAGAAGAGATGAACAGGATGACCAGACAACATGCACACAATCATCAGAAGAAGCTATGGAGGGAGAAGAAGATGAAACTCGCCCTCATGGCGAGCTCCTGTCGAGAGCTTGAGCTTCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGCGAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCACTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCGCCGGCGGCGGCGCCCCTGCCGCCATCACCGCTGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAATCTAAGAGTAGAGTAGTGAATGTATCTCTCTCATGCGTGCCTAACAAATGCTATGAAGTGTT]
[+] EMBL AK064118 [AAGTAGCAACGCAGCTCATCAGTGTCAAGATGGCTACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTCATGACCCCTCTCTCTCCTTGATATGGAACTTGAGCTTAGTCTAGGGGACTCTCCAGCTCCAGTGAAGGCCACCATTGCGCCTACACCGGTGCTTATACCAACATGCATGGGCGATGAAGAAGACCTGGAGCTTGTGCTTGGAGTAAGAGCAACTAGAAGAGATGAACAGGATGACCAGACAACATGCACACAATCATCAGAAGAAGCTATGGAGGGAGAAGAAGATGAAACTCGCCCTCATGGCGAGCTCCTGTCGAGAGCTTGAGCTTCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGCGAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCACTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCGCCGGCGGCGGCGCCCCTGCCGCCATCACCGCTGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAATCTAAGAGTAGAGTAGTGAATGTATCTCTCTCATGCGTGCCTAACAAATGCTATGAAGTGTT]
consensusID : consensus_7383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1266 fasta sequence
[TCTAACATTCTAATTCCATTTTTGAGAAAAAAATATAAAATAAAAATGTTACATAGTTTTTCCGACCATTTCCCTCCCTAGATGGCCCCATATTTTTCAGCCGTCGGAAATACTGTGTGTCCATATTACGTCGTCCCCAGTATCATCCGGCCGGAACCCGTAAATGCAAAAGTTAACGAATGCGACAAAACAATGGCAACTCCATTCTCAAATCGTGCGATTTTACTTGTTTTTAAGCATCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGCAAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCG-CCGGCGGCGGCGCCCCTGCCGCCATCACCGCCGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAAAAAAAAAAA]
[+] EMBL AY346328 [TCTAACATTCTAATTCCATTTTTGAGAAAAAAATATAAAATAAAAATGTTACATAGTTTTTCCGACCATTTCCCTCCCTAGATGGCCCCATATTTTTCAGCCGTCGGAAATACTGTGTGTCCATATTACGTCGTCCCCAGTATCATCCGGCCGGAACCCGTAAATGCAAAAGTTAACGAATGCGACAAAACAATGGCAACTCCATTCTCAAATCGTGCGATTTTACTTGTTTTTAAGCATCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGCAAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCG CCGGCGGCGGCGCCCCTGCCGCCATCACCGCCGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAAAAAAAAAAA]
[+] EMBL AF145731 [ GTATCCTCTGCAGAGACCGGCAGTGCAAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGCAGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCG CCGGCGGCGGCGCCCCTGCCGCCATCACCGCCGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCCGTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGCCGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCAGTTTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATATACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCATGCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACATATACTTTGTAAAAATGTAAAAAAAAAAAAA]
[+] EMBL CA753207 [ CGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGTAGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTTGAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCTGACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAGCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGTGGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTTCTCGTACCCGCCGCTGTACGGCCTCCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAGCAAGGTTCTTGCTGCCGCAGCTTCTGAGAGCTTCTCTCCGCGCTTTTTCGCCCGGC GCGGCGCCCCTGCCGCCATCACCGCCGCCGCCCCCCTGCCGTTTCCCGGCGCTGGCTCACCCCCGTCGTTCTCCCCCCCTTGGTTCGGCc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7383#0 AAGTAGCAACGCAGCTCATCAGTGTCAAGATGGCTACTACTAAGCATTTGGCTCTTGCCA 60
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 TCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTCATGACC 120
consensus_7383#1 --------------------------------------------------TCTAACATTC 10
* * *
consensus_7383#0 CCTCTCTCTCCTTGATATGGAACTTGAGCTTAGTCTAGGGGACTCTCCAGCTCCAGTGAA 180
consensus_7383#1 TAATTCCATTTTTGAGAAAAAAATATAAAATA----AAAATGTTACATAGTTTTTCCGA- 65
** * **** * ** * * ** * * ** * **
consensus_7383#0 GGCCACCATTGCGCCTACACCGGTGCTTATACCAACATGCATGGGCGATGAAGAAGACCT 240
consensus_7383#1 -----CCATTTC-CCTCCCTAGATGGC----CCCATATTTTTCAGCCGTCGGAAATACTG 115
***** * *** * * ** ** * ** * ** * ** **
consensus_7383#0 GGAGCTTGTGCTTGGAGTAAGAGCAACTAGAAGAGATGAACAGGATGACCAGACAACATG 300
consensus_7383#1 TGTGTCCATATT------------------ACGTCGTCCCCAGTATCATCCGGCCGGA-A 156
* * * * * * * *** ** * * * * *
consensus_7383#0 CACACAATCATCAGAAGAAGCTATGGAGGGAGAAGAAGATGAAACTCGCCCTCATGGCGA 360
consensus_7383#1 CCCGTAAATGCAAAAGTTAACGAATGCGACAAAACAATGGCAACTCCATTCTCAAATCGT 216
* * ** * * * * * * * * ** ** ** * **** **
consensus_7383#0 GCTCCTGT-CGAGAGCTTGAGCTTCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGC 419
consensus_7383#1 GCGATTTTACTTGTTTTTAAGCATCCCTCTGTTTGTATCCTCTGCAGAGACCGGCAGTGC 276
** * * * * ** *** *************************************
consensus_7383#0 GAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGC 479
consensus_7383#1 AAATTCAGAGATGTGCACACGTGGTTTTGATGTGAACACTCGGCCAGCAGACGGAGGCGC 336
***********************************************************
consensus_7383#0 AGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGT 539
consensus_7383#1 AGAGGCAGGGAGGCCTTCGTCACCATCTTCTATGCAGGAGGCATCCACGAGACAGCAGGT 396
************************************************************
consensus_7383#0 AGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTT 599
consensus_7383#1 AGCTGATCAGGAAGCTGCAGACGATGAGGATAACGGCGGTGGTGGCGCGAGGAAGAAGTT 456
************************************************************
consensus_7383#0 GAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCT 659
consensus_7383#1 GAGGCTATCCAAGGAACAGTCCTCGTTTCTGGAGGATAGTTTCAAAGAACACAGCACCCT 516
************************************************************
consensus_7383#0 GACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGA 719
consensus_7383#1 GACTCCGAAACAAAAGAGTGATTTAGCTAATCGGCTCAACCTTCGACCGCGCCAAGTGGA 576
************************************************************
consensus_7383#0 GGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGA 779
consensus_7383#1 GGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGA 636
*************************************** ********************
consensus_7383#0 GCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGT 839
consensus_7383#1 GCATCTGAAGCGCTGCTGCGAGAGGCTGACGCGGGAGAACCGGCGGCTGCAGAGGGAGGT 696
************************************************************
consensus_7383#0 GGCCGAGCTGCGTGGCACTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCT 899
consensus_7383#1 GGCCGAGCTGCGTGGCGCTCTCCGAACCACCACGTCGTCGTACCCGCCGCTGTACGGCCT 756
**************** *******************************************
consensus_7383#0 CCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAG 959
consensus_7383#1 CCACCACCTACCAGCTGCTGCCGGCACGGTGTTCCGGGTGTGCCCTTCATGTGAGCATAG 816
************************************************************
consensus_7383#0 CAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCGCCGGCGGCGG 1019
consensus_7383#1 CAAGGTCGTTGCTGCGGCAGCTTCTGAGAGCTTCTCTCCGCGCGTCTTCGCCGGCGGCGG 876
************************************************************
consensus_7383#0 CGCCCCTGCCGCCATCACCGCTGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCC 1079
consensus_7383#1 CGCCCCTGCCGCCATCACCGCCGCCGCCGCCGTGCCGTCTCCGGGCGCTGGCTCACCGCC 936
********************* **************************************
consensus_7383#0 GTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGC 1139
consensus_7383#1 GTCGTCGTCCGCCGCTTTGTTCGGCGCCAGACGGCCTCATTTTGGCCCCTTCGCCGCCGC 996
************************************************************
consensus_7383#0 CGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCA 1199
consensus_7383#1 CGTCATCCCGCCGGTGCTCCGCCGCCAGCCATCGGCGACGTCGTGAGGTCTTAGCTTGCA 1056
************************************************************
consensus_7383#0 GTTTTTTTT--CTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATA 1257
consensus_7383#1 GTTTTTTTTTTCTTGCACTGCATCTGCATGCACATGCTAATTAAATATGGGATATATATA 1116
********* *************************************************
consensus_7383#0 TACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCAT 1317
consensus_7383#1 TACGCGTGCATTGATCATGTAAATGTTTTCCCTTTTATGTTTGTTGTTCATCAAAATCAT 1176
************************************************************
consensus_7383#0 GCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACAT 1377
consensus_7383#1 GCTTATATAGGGAAATATGTACATATAGTTCTGTTCATAGAAAAGATTAAAGTCATACAT 1236
************************************************************
consensus_7383#0 ATACTTTGTAAAAATGTAAAATCTAAGAGTAGAGTAGTGAATGTATCTCTCTCATGCGTG 1437
consensus_7383#1 ATACTTTGTAAAAATGTAAAAAAAAAAAAA------------------------------ 1266
********************* ** *
consensus_7383#0 CCTAACAAATGCTATGAAGTGTT 1460
consensus_7383#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||