These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1607 fasta sequence [ACTACCCCACCCAACACCATCATCTGATCCATTTCCACAAAGCTTCTGAAAGCCAACACATACCTCACTGCCTTTGCCTTCTTCTCAGCTTCAAGAAGCCTTTTGAGCTTGTGATTTCTACATCATCCATCCATTTCATCACCATGATCCAAGAACTCCTTGGAGGGACAACCATGGACCAGCTCAAGGGCGCCAGCGCTCTGAACCACGCCTCCCTGCCGGTGGTGCTGCAGCCTATCGTGTCCAACCCGTCGCCCACGTCGTCGTCGTCGACGTCGTCGCGCTCGTCGGCGCAGGCGACGCAGCAGAGGTCGTCGTCGGCGACCTCGTCGCCGCACGGGCAGGGGCAGGGTGGCGGCGCGGCGGAGCAGGCGCCGCTGCGGTGCCCGCGGTGCAACTCGTCGAACACCAAGTTCTGCTACTACAACAACTACAACCTCACCCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGGTACTGGACCAAGGGCGGCGCGCTCCGCAACGTCCCCATCGGCGGCGGGTGCCGCAAGCCGCGCCCCATGCCGGCGCCGGTCGCCAAGCCGCCCATGTCTTGCAAGGCCGCGCCGCCGCTCGGCCTCGGCGGCGGGCCAGTGTCCTGGGCCTCCGGGCAGCAGGCCGCCACCGCGCACCTCATGGCGCTGCTCAACAGCGCCAGGGGAGTGCAGGGCCACGGCGGCAGCAATGTCCACCGGCTTCTTGGGCTGGACACCATGGGTCACCTCCAGATCCTGCCAGGCGCTCCCAATGGCGCCGGCGCCGGCACGGCGGCGTCGCTCTGGCCACAGTCCGCGCCGCGGCCGGTCACTCCACCGCCGCCGCACATGGACTCCCAGCTCGGCATGGGGACGCTGGGCCACCACGACGTGCTGTCGAGCCTCGGCCTCAAGCTGCCCTCGTCGGCGTCGTCCTCGCCGGCGGCGAGCTACTACAGCGACCAGCTGCACGCGGTGGTGAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACCGCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCCGCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCGCCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCCACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCATGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTGTGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACTGGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTATTAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAGCTCGTGGACGTACTTA] [+] EMBL AK063380 [ACTACCCCACCCAACACCATCATCTGATCCATTTCCACAAAGCTTCTGAAAGCCAACACATACCTCACTGCCTTTGCCTTCTTCTCAGCTTCAAGAAGCCTTTTGAGCTTGTGATTTCTACATCATCCATCCATTTCATCACCATGATCCAAGAACTCCTTGGAGGGACAACCATGGACCAGCTCAAGGGCGCCAGCGCTCTGAACCACGCCTCCCTGCCGGTGGTGCTGCAGCCTATCGTGTCCAACCCGTCGCCCACGTCGTCGTCGTCGACGTCGTCGCGCTCGTCGGCGCAGGCGACGCAGCAGAGGTCGTCGTCGGCGACCTCGTCGCCGCACGGGCAGGGGCAGGGTGGCGGCGCGGCGGAGCAGGCGCCGCTGCGGTGCCCGCGGTGCAACTCGTCGAACACCAAGTTCTGCTACTACAACAACTACAACCTCACCCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGGTACTGGACCAAGGGCGGCGCGCTCCGCAACGTCCCCATCGGCGGCGGGTGCCGCAAGCCGCGCCCCATGCCGGCGCCGGTCGCCAAGCCGCCCATGTCTTGCAAGGCCGCGCCGCCGCTCGGCCTCGGCGGCGGGCCAGTGTCCTGGGCCTCCGGGCAGCAGGCCGCCACCGCGCACCTCATGGCGCTGCTCAACAGCGCCAGGGGAGTGCAGGGCCACGGCGGCAGCAATGTCCACCGGCTTCTTGGGCTGGACACCATGGGTCACCTCCAGATCCTGCCAGGCGCTCCCAATGGCGCCGGCGCCGGCACGGCGGCGTCGCTCTGGCCACAGTCCGCGCCGCGGCCGGTCACTCCACCGCCGCCGCACATGGACTCCCAGCTCGGCATGGGGACGCTGGGCCACCACGACGTGCTGTCGAGCCTCGGCCTCAAGCTGCCCTCGTCGGCGTCGTCCTCGCCGGCGGCGAGCTACTACAGCGACCAGCTGCACGCGGTGGTGAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACCGCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCCGCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCGCCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCCACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCATGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTGTGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACTGGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTATTAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAGCTCGTGGACGTACTTA] [+] EMBL C27756 [ GCTACTACAACAACTACAACCTCACCCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGGTACTGGACCAAGGGCGGCGCGCTCCGCAACGTCCCCATCGGCGGCGGGTGCCGCAAGCNGCGCCCCATGCCGGCGCCGGTCGCCAAGCCGCCCATGTTTTGCAAGGCCGCGCCGCCGCTCGGCCTCGGCGGCGGGCCAGTNTCCTGGGCCTCCGGGCAGCAGGCCGCCACCGCGCACCTAATGGCGCTGCTCAACAGCG CAGGGGAGTGCAGGGCCANGG ] consensusID : consensus_7385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence [GTCGGGCGTCGTCCTCGCCGGCGGCAAGTTACTACAGCGACCAGCTGCACCCGGTGGTAAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACCGCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCCGCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCGCCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCCACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCATGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTGTGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACTGGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTATTAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAAAAAAAAAAAAAAA] [+] EMBL AU081004 [GTCGGGCGTCGTCCTCGCCGGCGGCAAGTTACTACAGCGACCAGCTGCACCCGGTGGTAAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACCGCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCCGCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCGCCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCCACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCATGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTGTGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACTGGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTATTAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAAAAAAAAAAAAAAA] [+] EMBL AU081006 [ tnAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAAATGGGGTTGTACTATNAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7385#0 ACTACCCCACCCAACACCATCATCTGATCCATTTCCACAAAGCTTCTGAAAGCCAACACA 60 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 TACCTCACTGCCTTTGCCTTCTTCTCAGCTTCAAGAAGCCTTTTGAGCTTGTGATTTCTA 120 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 CATCATCCATCCATTTCATCACCATGATCCAAGAACTCCTTGGAGGGACAACCATGGACC 180 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 AGCTCAAGGGCGCCAGCGCTCTGAACCACGCCTCCCTGCCGGTGGTGCTGCAGCCTATCG 240 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 TGTCCAACCCGTCGCCCACGTCGTCGTCGTCGACGTCGTCGCGCTCGTCGGCGCAGGCGA 300 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 CGCAGCAGAGGTCGTCGTCGGCGACCTCGTCGCCGCACGGGCAGGGGCAGGGTGGCGGCG 360 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 CGGCGGAGCAGGCGCCGCTGCGGTGCCCGCGGTGCAACTCGTCGAACACCAAGTTCTGCT 420 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 ACTACAACAACTACAACCTCACCCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGGTACT 480 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 GGACCAAGGGCGGCGCGCTCCGCAACGTCCCCATCGGCGGCGGGTGCCGCAAGCCGCGCC 540 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 CCATGCCGGCGCCGGTCGCCAAGCCGCCCATGTCTTGCAAGGCCGCGCCGCCGCTCGGCC 600 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 TCGGCGGCGGGCCAGTGTCCTGGGCCTCCGGGCAGCAGGCCGCCACCGCGCACCTCATGG 660 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 CGCTGCTCAACAGCGCCAGGGGAGTGCAGGGCCACGGCGGCAGCAATGTCCACCGGCTTC 720 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 TTGGGCTGGACACCATGGGTCACCTCCAGATCCTGCCAGGCGCTCCCAATGGCGCCGGCG 780 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 CCGGCACGGCGGCGTCGCTCTGGCCACAGTCCGCGCCGCGGCCGGTCACTCCACCGCCGC 840 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 CGCACATGGACTCCCAGCTCGGCATGGGGACGCTGGGCCACCACGACGTGCTGTCGAGCC 900 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 TCGGCCTCAAGCTGCCCTCGTCGG-CGTCGTCCTCGCCGGCGGCGAGCTACTACAGCGAC 959 consensus_7385#1 -------------------GTCGGGCGTCGTCCTCGCCGGCGGCAAGTTACTACAGCGAC 41 ***** ******************* ** ************ consensus_7385#0 CAGCTGCACGCGGTGGTGAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACC 1019 consensus_7385#1 CAGCTGCACCCGGTGGTAAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACC 101 ********* ******* ****************************************** consensus_7385#0 GCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCC 1079 consensus_7385#1 GCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCC 161 ************************************************************ consensus_7385#0 GCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCG 1139 consensus_7385#1 GCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCG 221 ************************************************************ consensus_7385#0 CCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCC 1199 consensus_7385#1 CCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCC 281 ************************************************************ consensus_7385#0 ACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCA 1259 consensus_7385#1 ACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCA 341 ************************************************************ consensus_7385#0 TGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTG 1319 consensus_7385#1 TGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTG 401 ************************************************************ consensus_7385#0 TGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACT 1379 consensus_7385#1 TGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACT 461 ************************************************************ consensus_7385#0 GGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTAT 1439 consensus_7385#1 GGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTAT 521 ************************************************************ consensus_7385#0 TAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCA 1499 consensus_7385#1 TAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCA 581 ************************************************************ consensus_7385#0 TAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCA 1559 consensus_7385#1 TAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCA 641 ************************************************************ consensus_7385#0 TGTATGGATGTAAGGTTTACATTCCCTGCAAGCTCGTGGACGTACTTA 1607 consensus_7385#1 TGTATGGATGTAAGGTTTACATTCCCTGCAAAAAAAAAAAAAAAA--- 686 ******************************* * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||