These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1086 fasta sequence [ATTCAAGCGCGCCTTCGCCGCCATCTCCCCGCCGCCCCCCTAGCACCCCGCCTCCTCTCCGACGTCCTCCTCCGCCGCGCGCGAGCACCTGTTCGACAAGACGGTGACGCCCAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCAGCTCCCTCCCCCTACCACAACCTCCTCCGTCGCCGCCGCCGCCGACGCCGCCGCCGGCGGCGGCGATTGCAAGGGCGTCCTCCTCAACTTCGAGGACGCCGCCGGGAAGGTGTGGAAATTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGGGGCTCCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAGTTTAGTGACTCTTGATCAAATCTCTTGCTTGCTTGCTTGATTTCATTTCTTGTCATATATGCTCTACTCTACCACAATCGATCTAGTCTTTGTTAATCCTCCATTTCTTTCTCATTTTAATTTGGCAAGTGTATACTAATTCTGCCCTAGATTAAGAGCTTCATGCATGCCATAAGAAGCAACGTTTGATCGATCGAGCTAGCAAAACTCTTGTTGTCTTTGGGTCGATCTAGCTCAGCTTCTTTCCTTCTTCAATTCAATTCCTAATTAACTGTGAAAGGGATGTGATGCAAAA] [+] EMBL CB672626 [ATTCAAGCGCGCCTTCGCCGCCATCTCCCCGCCGCCCCCCTAGCACCCCGCCTCCTCTCCGACGTCCTCCTCCGCCGCGCGCGAGCACCTGTTCGACAAGACGGTGACGCCCAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCAGCTCCCTCCCCCTACCACAACCTCCTCCGTCGCCGCCGCCGCCGACGCCGCCGCCGGCGGCGGCGATTGCAAGGGCGTCCTCCTCAACTTCGAGGACGCCGCCGGGAAGGTGTGGAAATTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGGGGCTCCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGGTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAGTTTAGTGACTCTTGATCAAATC ] [-] EMBL CB672625 [ GGGGCTCCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAGTTTAGTGACTCTTGATCAAATCTCTTGCTTGCTTGCTTGATTTCATTTCTTGTCATATATGCTCTACTCTACCACAATCGATCTAGTCTTTGTTAATCCTCCATTTCTTTCTCATTTTAATTTGGCAAGTGTATACTAATTCTGCCCTAGATTAAGAGCTTCATGCATGCCATAAGAAGCAACGTTTGATCGATCGAGCTAGCAAAACTCTTGTTGTCTTTGGGTCGATCTAGCTCAGCTTCTTTCCTTCTTCAATTCAATTCCTAA ] [-] EMBL CB674026 [ AGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAGTTTAGTGACTCTTGATCAAATCTCTTTCTTGCTTGCTTGATTTCATTTCTTGTCATATATGCTCTACTCTACCACAATCGATGTAGTCTTTGTTAATCCTCCATTTCTTTCTCATTTTAATTTGGCAAGTGTATACTAATTCTGCCCTAGATTAAGAGCTTCATGCATGCCATAAGAAGCAACGTTTGATCGATCGAGCTAGCAAAGCTCTTGTTGTCTCTAGCTCGATCTAGCTCAGCTTCTTTCCTTCTTCAATTCAATTCCTAATTAACTGTGAAAGGGATGTGATGCAAAA] consensusID : consensus_7387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [GCCCCACTNGAGTCGACCCACGTCGCAACGCNTCGCAGAGTTTCACNCTTCATCAGCTTAGCTAGCTAGCTGATCNATCCGGCGGCGTGATCGATCGATANTCTCTGATTCTATNCAGGTGTTCGACCAGATTCCATCGATGGACAGCACGAGCTGTCTCTTGGCCGACGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAAAAAAAAAAA] [+] EMBL AU091502 [GCCCCACTNGAGTCGACCCACGTCGCAACGCNTCGCAGAGTTTCACNCTTCATCAGCTTAGCTAGCTAGCTGATCNATCCGGCGGCGTGATCGATCGATANTCTCTGATTCTATNCAGGTGTTCGACCAGATTCCATCGATGGACAGCACGAGCTGTCTCTTGGCCGACGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7387#0 ATTCAAGCGCGCCTTCGCCGCCATCTCCCCGCCGCCCCCCTAGCACCCCGCCTCCTCTCC 60 consensus_7387#1 ------------------------------------------------------------ consensus_7387#0 GACGTCCTCCTCCGCCGCGCGCGAGCACCTGTTCGACAAGACGGTGACGCCCAGCGACGT 120 consensus_7387#1 ------------------------------------------------------------ consensus_7387#0 CGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCA 180 consensus_7387#1 ------------------------------------------------------------ consensus_7387#0 GCTCCCTCCCCCTACCACAACCTCCTCCGTCGCCGCCGCCGCCGACGCCGCCGCCGGCGG 240 consensus_7387#1 ------------------------------------------------------------ consensus_7387#0 CGGCGATTGCAAGGGCGTCCTCCTCAACTTCGAGGACGCCGCCGGGAAGGTGTGGAAATT 300 consensus_7387#1 ------------------------------------------------------------ consensus_7387#0 CCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGGTGGAGCCGCTT 360 consensus_7387#1 ------GCCCCACTNGAGTCG-ACCCACGTCGCAACGCNTCGCAGAGTTTCACNCTTCAT 53 ** *** ** * * *** * ** ** * * * * * consensus_7387#0 CGTCAAGGAGAAGGGGCT--CCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGT 418 consensus_7387#1 CAGCTTAGCTAGCTAGCTGATCNATCCGGCGGCGTGATCGATCGATANT-CTCTGATTCT 112 * * * * *** * ****** ** *** ** * * * * consensus_7387#0 AAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCC 478 consensus_7387#1 ATNCAGGTGTTCGACCAGATTCCATCGATGGACAGCACGAGCTGTCTCTTGGCCGACGCC 172 * * * * * ** * * ** * * * * * **** **** consensus_7387#0 GCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCT 538 consensus_7387#1 GCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCT 232 ************************************************************ consensus_7387#0 ATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGC 598 consensus_7387#1 ATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGC 292 ************************************************************ consensus_7387#0 GGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACAC 658 consensus_7387#1 G-CGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACAC 351 * ********************************************************** consensus_7387#0 GTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGC 718 consensus_7387#1 GTGGTTTTTAAGAAGCAATGCATAGAG-TTGCGCTAACCTAGCTAGCACGCTGATGCAGC 410 *************************** ******************************** consensus_7387#0 TAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACAT 778 consensus_7387#1 TAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACAT 470 ************************************************************ consensus_7387#0 AATTAATGGTTAGTTTAGTGACTCTTGATCAAATCTCTTGCTTGCTTGCTTGATTTCATT 838 consensus_7387#1 AATTAATGGTTAAAAAAAAAAA-------------------------------------- 492 ************ * * consensus_7387#0 TCTTGTCATATATGCTCTACTCTACCACAATCGATCTAGTCTTTGTTAATCCTCCATTTC 898 consensus_7387#1 ------------------------------------------------------------ consensus_7387#0 TTTCTCATTTTAATTTGGCAAGTGTATACTAATTCTGCCCTAGATTAAGAGCTTCATGCA 958 consensus_7387#1 ------------------------------------------------------------ consensus_7387#0 TGCCATAAGAAGCAACGTTTGATCGATCGAGCTAGCAAAACTCTTGTTGTCTTTGGGTCG 1018 consensus_7387#1 ------------------------------------------------------------ consensus_7387#0 ATCTAGCTCAGCTTCTTTCCTTCTTCAATTCAATTCCTAATTAACTGTGAAAGGGATGTG 1078 consensus_7387#1 ------------------------------------------------------------ consensus_7387#0 ATGCAAAA 1086 consensus_7387#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||