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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1086 fasta sequence
[ATTCAAGCGCGCCTTCGCCGCCATCTCCCCGCCGCCCCCCTAGCACCCCGCCTCCTCTCCGACGTCCTCCTCCGCCGCGCGCGAGCACCTGTTCGACAAGACGGTGACGCCCAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCAGCTCCCTCCCCCTACCACAACCTCCTCCGTCGCCGCCGCCGCCGACGCCGCCGCCGGCGGCGGCGATTGCAAGGGCGTCCTCCTCAACTTCGAGGACGCCGCCGGGAAGGTGTGGAAATTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGGGGCTCCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAGTTTAGTGACTCTTGATCAAATCTCTTGCTTGCTTGCTTGATTTCATTTCTTGTCATATATGCTCTACTCTACCACAATCGATCTAGTCTTTGTTAATCCTCCATTTCTTTCTCATTTTAATTTGGCAAGTGTATACTAATTCTGCCCTAGATTAAGAGCTTCATGCATGCCATAAGAAGCAACGTTTGATCGATCGAGCTAGCAAAACTCTTGTTGTCTTTGGGTCGATCTAGCTCAGCTTCTTTCCTTCTTCAATTCAATTCCTAATTAACTGTGAAAGGGATGTGATGCAAAA]
[+] EMBL CB672626 [ATTCAAGCGCGCCTTCGCCGCCATCTCCCCGCCGCCCCCCTAGCACCCCGCCTCCTCTCCGACGTCCTCCTCCGCCGCGCGCGAGCACCTGTTCGACAAGACGGTGACGCCCAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCAGCTCCCTCCCCCTACCACAACCTCCTCCGTCGCCGCCGCCGCCGACGCCGCCGCCGGCGGCGGCGATTGCAAGGGCGTCCTCCTCAACTTCGAGGACGCCGCCGGGAAGGTGTGGAAATTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGGGGCTCCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGGTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAGTTTAGTGACTCTTGATCAAATC ]
[-] EMBL CB672625 [ GGGGCTCCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAGTTTAGTGACTCTTGATCAAATCTCTTGCTTGCTTGCTTGATTTCATTTCTTGTCATATATGCTCTACTCTACCACAATCGATCTAGTCTTTGTTAATCCTCCATTTCTTTCTCATTTTAATTTGGCAAGTGTATACTAATTCTGCCCTAGATTAAGAGCTTCATGCATGCCATAAGAAGCAACGTTTGATCGATCGAGCTAGCAAAACTCTTGTTGTCTTTGGGTCGATCTAGCTCAGCTTCTTTCCTTCTTCAATTCAATTCCTAA ]
[-] EMBL CB674026 [ AGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAGTTTAGTGACTCTTGATCAAATCTCTTTCTTGCTTGCTTGATTTCATTTCTTGTCATATATGCTCTACTCTACCACAATCGATGTAGTCTTTGTTAATCCTCCATTTCTTTCTCATTTTAATTTGGCAAGTGTATACTAATTCTGCCCTAGATTAAGAGCTTCATGCATGCCATAAGAAGCAACGTTTGATCGATCGAGCTAGCAAAGCTCTTGTTGTCTCTAGCTCGATCTAGCTCAGCTTCTTTCCTTCTTCAATTCAATTCCTAATTAACTGTGAAAGGGATGTGATGCAAAA]
consensusID : consensus_7387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence
[GCCCCACTNGAGTCGACCCACGTCGCAACGCNTCGCAGAGTTTCACNCTTCATCAGCTTAGCTAGCTAGCTGATCNATCCGGCGGCGTGATCGATCGATANTCTCTGATTCTATNCAGGTGTTCGACCAGATTCCATCGATGGACAGCACGAGCTGTCTCTTGGCCGACGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAAAAAAAAAAA]
[+] EMBL AU091502 [GCCCCACTNGAGTCGACCCACGTCGCAACGCNTCGCAGAGTTTCACNCTTCATCAGCTTAGCTAGCTAGCTGATCNATCCGGCGGCGTGATCGATCGATANTCTCTGATTCTATNCAGGTGTTCGACCAGATTCCATCGATGGACAGCACGAGCTGTCTCTTGGCCGACGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7387#0 ATTCAAGCGCGCCTTCGCCGCCATCTCCCCGCCGCCCCCCTAGCACCCCGCCTCCTCTCC 60
consensus_7387#1 ------------------------------------------------------------
consensus_7387#0 GACGTCCTCCTCCGCCGCGCGCGAGCACCTGTTCGACAAGACGGTGACGCCCAGCGACGT 120
consensus_7387#1 ------------------------------------------------------------
consensus_7387#0 CGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCA 180
consensus_7387#1 ------------------------------------------------------------
consensus_7387#0 GCTCCCTCCCCCTACCACAACCTCCTCCGTCGCCGCCGCCGCCGACGCCGCCGCCGGCGG 240
consensus_7387#1 ------------------------------------------------------------
consensus_7387#0 CGGCGATTGCAAGGGCGTCCTCCTCAACTTCGAGGACGCCGCCGGGAAGGTGTGGAAATT 300
consensus_7387#1 ------------------------------------------------------------
consensus_7387#0 CCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGGTGGAGCCGCTT 360
consensus_7387#1 ------GCCCCACTNGAGTCG-ACCCACGTCGCAACGCNTCGCAGAGTTTCACNCTTCAT 53
** *** ** * * *** * ** ** * * * * *
consensus_7387#0 CGTCAAGGAGAAGGGGCT--CCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGT 418
consensus_7387#1 CAGCTTAGCTAGCTAGCTGATCNATCCGGCGGCGTGATCGATCGATANT-CTCTGATTCT 112
* * * * *** * ****** ** *** ** * * * *
consensus_7387#0 AAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCC 478
consensus_7387#1 ATNCAGGTGTTCGACCAGATTCCATCGATGGACAGCACGAGCTGTCTCTTGGCCGACGCC 172
* * * * * ** * * ** * * * * * **** ****
consensus_7387#0 GCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCT 538
consensus_7387#1 GCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCT 232
************************************************************
consensus_7387#0 ATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGC 598
consensus_7387#1 ATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGC 292
************************************************************
consensus_7387#0 GGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACAC 658
consensus_7387#1 G-CGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACAC 351
* **********************************************************
consensus_7387#0 GTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGC 718
consensus_7387#1 GTGGTTTTTAAGAAGCAATGCATAGAG-TTGCGCTAACCTAGCTAGCACGCTGATGCAGC 410
*************************** ********************************
consensus_7387#0 TAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACAT 778
consensus_7387#1 TAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACAT 470
************************************************************
consensus_7387#0 AATTAATGGTTAGTTTAGTGACTCTTGATCAAATCTCTTGCTTGCTTGCTTGATTTCATT 838
consensus_7387#1 AATTAATGGTTAAAAAAAAAAA-------------------------------------- 492
************ * *
consensus_7387#0 TCTTGTCATATATGCTCTACTCTACCACAATCGATCTAGTCTTTGTTAATCCTCCATTTC 898
consensus_7387#1 ------------------------------------------------------------
consensus_7387#0 TTTCTCATTTTAATTTGGCAAGTGTATACTAATTCTGCCCTAGATTAAGAGCTTCATGCA 958
consensus_7387#1 ------------------------------------------------------------
consensus_7387#0 TGCCATAAGAAGCAACGTTTGATCGATCGAGCTAGCAAAACTCTTGTTGTCTTTGGGTCG 1018
consensus_7387#1 ------------------------------------------------------------
consensus_7387#0 ATCTAGCTCAGCTTCTTTCCTTCTTCAATTCAATTCCTAATTAACTGTGAAAGGGATGTG 1078
consensus_7387#1 ------------------------------------------------------------
consensus_7387#0 ATGCAAAA 1086
consensus_7387#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||