These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1803 fasta sequence [GCCACATCGCATAATCTCGTCGCGCACACGACACACCCCCGCTGCGCACCCACCCAAGGCGAAATTTCGCCGGCGCGCGGGCCCCACGATCATCGGCCCAACTCAGGAAGCGCAAGAAGAAGCAACCGGAGAGCCTCCTCCGGCGGCCATGGCCAGGGCCCTCCTCCTCCGGCGCGGCCACCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATCCTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGACCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGCGCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCTAAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGACATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGAGGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGGATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGGTGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCTTGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTCGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCACCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAAGTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGAGCATAACAGAAGAGTTCGTTTCAGCAACAGATGAACAAGTACCTGAAGAGGTTGAGGCCTGAAGCAATATAGCAGTATCCTTTTTCTTTTTCTTTTTCTTTTTCCTGCAAGACTAGTGTACATATGCCACGTTTCATCTCTTCTTAACTTGCAAGGTTTCTAGCTAAGCTGTGCGACAATAACCAAGTAAGGATAAAATGTAAATAACTTTTCACCATTTTGCTGTGTACATGCCATTGTACATATTTATCCACCTTAGGCTGTGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTGAAATTGGAGATGATGTGACTGAAAAGTTATGTGTGTATGACAGGTTGATGTGATGGAAAATGACTGAATTTTGGATCCAAACTTTGGATCTAAACACAGCCTTAGTTTGAGAAACAGCAAATTTATC] [+] EMBL AK073931 [GCCACATCGCATAATCTCGTCGCGCACACGACACACCCCCGCTGCGCACCCACCCAAGGCGAAATTTCGCCGGCGCGCGGGCCCCACGATCATCGGCCCAACTCAGGAAGCGCAAGAAGAAGCAACCGGAGAGCCTCCTCCGGCGGCCATGGCCAGGGCCCTCCTCCTCCGGCGCGGCCACCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATCCTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGACCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGCGCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCTAAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGACATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGAGGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGGATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGGTGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCTTGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTCGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCACCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAAGTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGAGCATAACAGAAGAGTTCGTTTCAGCAACAGATGAACAAGTACCTGAAGAGGTTGAGGCCTGAAGCAATATAGCAGTATCCTTTTTCTTTTTCTTTTTCTTTTTCCTGCAAGACTAGTGTACATATGCCACGTTTCATCTCTTCTTAACTTGCAAGGTTTCTAGCTAAGCTGTGCGACAATAACCAAGTAAGGATAAAATGTAAATAACTTTTCACCATTTTGCTGTGTACATGCCATTGTACATATTTATCCACCTTAGGCTGTGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTGAAATTGGAGATGATGTGACTGAAAAGTTATGTGTGTATGACAGGTTGATGTGATGGAAAATGACTGAATTTTGGATCCAAACTTTGGATCTAAACACAGCCTTAGTTTGAGAAACAGCAAATTTATC] [+] EMBL CB683019 [ AGGGCCCTCCTCCTCCGGCGCGGCCACCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATCCTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGACCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGCGCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCTAAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGACATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGAGGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGGATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGGTGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCTTGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGG ] [-] EMBL CB683020 [ AGCTAAGCTGTGCGCCAATAACCAAGTAAGGATAAAATGTAAATAACTTTTCCCCATTTTGCTGTGTACATGCCATTGTACATATTTATCCCCCTTAGGCTGTGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTGAAATTGGAGATGATGTGACTGAAAAGTTATGTGTGTATGACAGGTTGATGTGATGGAAAATGACTGAATTTTGGATCCAAACTTTGGATCTAAAAAGAGCCTTAGTTTGAGAAA ] consensusID : consensus_7390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 879 fasta sequence [GTGGCTCTATTGATGTTGCGGTCGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTTGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCATCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAATTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGGGCATAACAGAAGAGTTCGNTTCAGCAACAGATGAACAAGTACCTGNAGAGGTTGAGGCCTGAAGCAATATAGCAGTATCCTTTTTCTTTTTCNTTTTCNTTTTCCTGCAGACTAGNGACATATGCCACGGTTCATCTCTTCTTACTTGCAGGGTTCTAGCTAAGCTGGGCGACATTANCCAGTAGGNTAAATGGAATACCTTTTACATTTTGCTGGGNAAAAAAAAAAAAAAAAAAACGG] [+] EMBL CA764151 [GTGGCTCTATTGATGTTGCGGTCGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTTGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCATCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAATTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGGGCATAACAGAAGAGTTCGNTTCAGCAACAGATGAACAAGTACCTGNAGAGGTTGAGGCCTGAAGCAATATAGCAGTATCCTTTTTCTTTTTCNTTTTCNTTTTCCTGCAGACTAGNGACATATGCCACGGTTCATCTCTTCTTACTTGCAGGGTTCTAGCTAAGCTGGGCGACATTANCCAGTAGGNTAAATGGAATACCTTTTACATTTTGCTGGGNAAAAAAAAAAAAAAAAAAACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7390#0 GCCACATCGCATAATCTCGTCGCGCACACGACACACCCCCGCTGCGCACCCACCCAAGGC 60 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 GAAATTTCGCCGGCGCGCGGGCCCCACGATCATCGGCCCAACTCAGGAAGCGCAAGAAGA 120 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 AGCAACCGGAGAGCCTCCTCCGGCGGCCATGGCCAGGGCCCTCCTCCTCCGGCGCGGCCA 180 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 CCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATC 240 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 CTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGA 300 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 CCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGC 360 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 GCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCT 420 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 AAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGA 480 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 CATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGA 540 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 GGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGG 600 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 ATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGG 660 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 TGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCT 720 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 TGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGC 780 consensus_7390#1 --------------------GTGGCTCTATTGATGTTGCGGTCGTGGACAGTGTAGCAGC 40 ****************** *** ***************** consensus_7390#0 TCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGC 840 consensus_7390#1 TCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGC 100 ************************************************************ consensus_7390#0 AAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAAT 900 consensus_7390#1 AAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAAT 160 ************************************************************ consensus_7390#0 GTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTCGGAGCACC 960 consensus_7390#1 GTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTTGGAGCACC 220 *************************************************** ******** consensus_7390#0 AGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACAC 1020 consensus_7390#1 AGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACAC 280 ************************************************************ consensus_7390#0 CAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAA 1080 consensus_7390#1 CAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAA 340 ************************************************************ consensus_7390#0 GATTGTCAAGAACAAGCATGCACCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGG 1140 consensus_7390#1 GATTGTCAAGAACAAGCATGCATCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGG 400 ********************** ************************************* consensus_7390#0 TAAGGGCCTGAGTCGTGAATTGGAGATTATTGAAGTAGGCTTCAAACACAAGTTCATAAC 1200 consensus_7390#1 TAAGGGCCTGAGTCGTGAATTGGAGATTATTGAATTAGGCTTCAAACACAAGTTCATAAC 460 ********************************** ************************* consensus_7390#0 AAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAA 1260 consensus_7390#1 AAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAA 520 ************************************************************ consensus_7390#0 ATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAG 1320 consensus_7390#1 ATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAG 580 ************************************************************ consensus_7390#0 CATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGAG 1380 consensus_7390#1 CATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGGG 640 ********************************************************** * consensus_7390#0 CATAACAGAAGAGTTCGTTTCAGCAACAGATGAACAAGTACCTGAAGAGGTTGAGGCCTG 1440 consensus_7390#1 CATAACAGAAGAGTTCGNTTCAGCAACAGATGAACAAGTACCTGNAGAGGTTGAGGCCTG 700 ***************** ************************** *************** consensus_7390#0 AAGCAATATAGCAGTATCCTTTTTCTTTTTCTTTTTCTTTTTCCTGCAAGACTAGTGTAC 1500 consensus_7390#1 AAGCAATATAGCAGTATCCTTTTTCTTTTTCNTTTTCNTTTTCCTGCA-GACTAGNG-AC 758 ******************************* ***** ********** ****** * ** consensus_7390#0 ATATGCCACGTTTCATCTCTTCTTAACTTGCAAGGTTTCTAGCTAAGCTGTGCGACAATA 1560 consensus_7390#1 ATATGCCACGGTTCATCTCTTCTTA-CTTGCAGGGTT-CTAGCTAAGCTGGGCGACATTA 816 ********** ************** ****** **** ************ ****** ** consensus_7390#0 ACCAAGTAAGGATAAAATGTAAATAACTTTTCACCATTTTGCTGTGTACATGCCATTGTA 1620 consensus_7390#1 NCCAG--TAGGNTAAATGG--AATACCTTTTA--CATTTTGCTGGGNAAAAAAAAAAAAA 870 *** *** **** * **** ***** ********** * * * * * consensus_7390#0 CATATTTATCCACCTTAGGCTGTGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTGAAAT 1680 consensus_7390#1 AAAAAACGG--------------------------------------------------- 879 * * consensus_7390#0 TGGAGATGATGTGACTGAAAAGTTATGTGTGTATGACAGGTTGATGTGATGGAAAATGAC 1740 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 TGAATTTTGGATCCAAACTTTGGATCTAAACACAGCCTTAGTTTGAGAAACAGCAAATTT 1800 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 ATC 1803 consensus_7390#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||