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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1694 fasta sequence
[ACCTCCATTTCCCTCCCATTTCTTTCCTTCTCCGCAGATATTCCCCAAGAATCTCCTCCTCCTCCTCGGATTCCCCTCTCTCTCTCCTCCTACAGAGTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGATGGAAAGAGTTTGTGAGAACACTACAGCTGCTGATTTCAAGCAAAATAAGTCTGGTAATTTTGTCCCAAATATTCGATCTGGGGATTGGTCGGATATTGGAGGTCGTCAATACATGGAAGATACCCATGTGTGTATTACTGACCTAGCTAAGAACTTTGGTTATCAATCGGTGGATAATGAAGCTATTTCCTTTTATGGGGTCTTTGATGGGCATGGTGGAAAAGATGCTGCCCATTTTGTTCGTGATAATTTACCAAGGATCATTGTGGAAGATGCTGATTTTCCTCTTGAGCTTGAGAAAGTAGTAAGAAGATCCTTTGTTCATGCAGATAATCAGTTTGCAAAGACAACACTGTCTTCTGGCACAACAGCACTTACAGCAATGATTTTCGGAAGGACTCTTCTGATTGCAAATGCTGGAGATTGTAGGGCGGTTCTTTCACGGTGCGGCACTGCAATTGAAATGTCAGTGGACCACAGGCCTTGCAGCCTCAGCGAAAAACTGCGTGTAGAATCACTTGGTGGCTATGTCGACGATGGTTACCTCAACGGTTTGTTAGGAGTCACTAGAGCACTCGGTGACTGGCATCTTGAGGGCATGAAAGAAGCTGGCAATCCAGGAGGTCCACTTAGTGCTGAACCAGAGCTAAAGATGATCACACTGACAAAGGACGACGAGTTCTTGATAATTGGCAGCGACGGGATCTGGGACGTCTTCTCAAACCAAAACGTGGTGGACTTTGCACGGAGGCGCCTCCAAGAACACAACGATGTGAAGTCCTGCTGCAGGGAGATCGTTGAGGAGGCAATAAAGCGAGGC-GCCACCGACAACTTAACCGCGGTGTTGGTCTCCTTCCACCTGGAGGCTCCTCCCCAGGTCAGAGTGAGCCGACCCGGTAGGGTGGCGCGCAGCATTTCGGCTGAGGGGCTGAACAGCTTGAGGACACTCCTGAGAAACCAATGATGGCCATCTTCTTTGCATTCTTGCTGCAATTTCTCTAGTATGTTGCATTGCCGAGTGTTAATTGTATGTAGTGATCTCGGCACCTCATTGTTGTTAGATGTTACCACCATTGTTGTGATGACACCAGCTATTATTCTTGTTGGTAATTAAGCCAACGAACATGAGTTCTGAGCTCTCAAATTGTGAGAAATTCTAAGCGGCTGTAACAAGTTGAGCTCTGTGAAGAAAGAAGTGAGTGCCCAAGCTCACAGTGTCATATTTTTCTCCTATTCTTGTCTGTAAATAAAAATGTCAGCTACTCAGCTCCTGGGTAATTGAACGTTGACCATGTAAAAGATACCCCCATTGAGTGAAATTGCCGCCAATTGGC]
[+] EMBL AK065602 [ACCTCCATTTCCCTCCCATTTCTTTCCTTCTCCGCAGATATTCCCCAAGAATCTCCTCCTCCTCCTCGGATTCCCCTCTCTCTCTCCTCCTACAGAGTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGATGGAAAGAGTTTGTGAGAACACTACAGCTGCTGATTTCAAGCAAAATAAGTCTGGTAATTTTGTCCCAAATATTCGATCTGGGGATTGGTCGGATATTGGAGGTCGTCAATACATGGAAGATACCCATGTGTGTATTACTGACCTAGCTAAGAACTTTGGTTATCAATCGGTGGATAATGAAGCTATTTCCTTTTATGGGGTCTTTGATGGGCATGGTGGAAAAGATGCTGCCCATTTTGTTCGTGATAATTTACCAAGGATCATTGTGGAAGATGCTGATTTTCCTCTTGAGCTTGAGAAAGTAGTAAGAAGATCCTTTGTTCATGCAGATAATCAGTTTGCAAAGACAACACTGTCTTCTGGCACAACAGCACTTACAGCAATGATTTTCGGAAGGACTCTTCTGATTGCAAATGCTGGAGATTGTAGGGCGGTTCTTTCACGGTGCGGCACTGCAATTGAAATGTCAGTGGACCACAGGCCTTGCAGCCTCAGCGAAAAACTGCGTGTAGAATCACTTGGTGGCTATGTCGACGATGGTTACCTCAACGGTTTGTTAGGAGTCACTAGAGCACTCGGTGACTGGCATCTTGAGGGCATGAAAGAAGCTGGCAATCCAGGAGGTCCACTTAGTGCTGAACCAGAGCTAAAGATGATCACACTGACAAAGGACGACGAGTTCTTGATAATTGGCAGCGACGGGATCTGGGACGTCTTCTCAAACCAAAACGTGGTGGACTTTGCACGGAGGCGCCTCCAAGAACACAACGATGTGAAGTCCTGCTGCAGGGAGATCGTTGAGGAGGCAATAAAGCGAGGC GCCACCGACAACTTAACCGCGGTGTTGGTCTCCTTCCACCTGGAGGCTCCTCCCCAGGTCAGAGTGAGCCGACCCGGTAGGGTGGCGCGCAGCATTTCGGCTGAGGGGCTGAACAGCTTGAGGACACTCCTGAGAAACCAATGATGGCCATCTTCTTTGCATTCTTGCTGCAATTTCTCTAGTATGTTGCATTGCCGAGTGTTAATTGTATGTAGTGATCTCGGCACCTCATTGTTGTTAGATGTTACCACCATTGTTGTGATGACACCAGCTATTATTCTTGTTGGTAATTAAGCCAACGAACATGAGTTCTGAGCTCTCAAATTGTGAGAAATTCTAAGCGGCTGTAACAAGTTGAGCTCTGTGAAGAAAGAAGTGAGTGCCCAAGCTCACAGTGTCATATTTTTCTCCTATTCTTGTCTGTAAATAAAAATGTCAGCTACTCAGCTCCTGGGTAATTGAACGTTGACCATGTAAAAGATACCCCCATTGAGTGAAATTGCCGCCAATTGGC]
[+] EMBL BI812573 [ CGTCTTCTCAACCCTAAACGT GT GACTTTGCACGGAGGCGCCTCCAAGAACACAACGATGTGAAGTCCTGCTGCAGGGAGATCTTTGAGGAGGCAATAAAGCGAGGCTGCCACCGACAACTTAACC CGGT TTGGTCTCCTTCCACCTGGAGGCTCCTCCCCAGGTCAGAGTGAGCCGACCCGGTAGGGTGGCGCGCAGCATTTCGGCTGAGGGGCTGAACAGCTTGAGGACACTCCTGAGAAACC ATGATGGCCATCTTCTTTGCATTCTTGCTGC ATTTCTCTAGTATGTTGCATTGCCGAGTGTTAATTGTATGTAGTGATCTCGGCACCTCATTGTTGTTAGATGTTACCACCATTGTTGTGATGACACCAGCTATTATTCTTGTTGGTAATTAAGCC ACGAACATGAGTTCTGAGCTCTC AATTGTGAGAAATTCTAAGCGGCTGTAACAAGTTGAGCTCTGTGAAGAAAAAAaa ]
consensusID : consensus_7391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 490 fasta sequence
[AGTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGGTTCGTTTGATTTCCCTTCATGGCGTGAAGGAAGGAAGGACGATGATGATGAGATTGGGAAGGAAGGAAGGAAGGAAGGAAGCAAAGCATGCCCTTCTGGGTGCTTGCTTTGTGCACACGCCTCTTCCGTTTCTTGAAACACATGGAGTATTATTAGAAGTGATTGTGATTCTTTTTTCTTGTTTAATTATTACTGCTAGCTAGTACTGATTGTGCCTAAAAAAAAA]
[+] EMBL CF309538 [AGTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGGTTCGTTTGATTTCCCTTCATGGCGTGAAGGAAGGAAGGACGATGATGATGAGATTGGGAAGGAAGGAAGGAAGGAAGGAAGCAAAGCATGCCCTTCTGGGTGCTTGCTTTGTGCACACGCCTCTTCCGTTTCTTGAAACACATGGAGTATTATTAGAAGTGATTGTGATTCTTTTTTCTTGTTTAATTATTACTGCTAGCTAGTACTGATTGTGCCTAAAAAAAA ]
[-] EMBL CF309539 [ GTAGTAGCTTGTGCTTGCTTTGCTCCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCCAGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGGTATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGCCGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGGTTCGTTTGATTTCCCTTCATGGCGTGAAGGAAGGAAGGACGATGATGATGAGATTGGGAAGGAAGGAAGGAAGGAAGGAAGCAAAGCATGCCCTTCTGGGTGCTTGCTTTGTGCACACGCCTCTTCCGTTTCTTGAAACACATGGAGTATTATTAGAAGTGATTGTGATTCTTTTTTCTTGTTTAATTATTACTGCTAGCTAGTACTGATTGTGCCTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7391#0 ACCTCCATTTCCCTCCCATTTCTTTCCTTCTCCGCAGATATTCCCCAAGAATCTCCTCCT 60
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 CCTCCTCGGATTCCCCTCTCTCTCTCCTCCTACAGAGTAGTAGCTTGTGCTTGCTTTGCT 120
consensus_7391#1 -----------------------------------AGTAGTAGCTTGTGCTTGCTTTGCT 25
*************************
consensus_7391#0 CCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCC 180
consensus_7391#1 CCGATTCTCTCTCTTCCCTGTCTCTCCTAGCTGCAATATACCACTAGCAGCAGGGCGCCC 85
************************************************************
consensus_7391#0 AGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGG 240
consensus_7391#1 AGTTGCGCGATCGATCGATCGAGCTCCGTGGTGCCAAGAACGCCCTGTACGGCGCGCCGG 145
************************************************************
consensus_7391#0 TATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGC 300
consensus_7391#1 TATGTGCGTGGAGGAGTCGGAGGGCGCGGAGAGGCTGGATTTTGGGGAGCCCGCCGCCGC 205
************************************************************
consensus_7391#0 CGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGGAT 360
consensus_7391#1 CGCCGCCGACGCCGGGAAGAGCAAGAGCAAGAGCCCCGACGAACTCCCCTCGCCTCGG-- 263
**********************************************************
consensus_7391#0 GGAAAGAGTTTGTGAGAACACTACAGCTGCTGATTTCAAGCAAAATAAGTCTGGTAATTT 420
consensus_7391#1 -------GTTCGTTTGA---TTTCCCTTCATGGCGTGAAG-GAAGGAAGGACGATGATGA 312
*** ** ** * * * ** * *** ** *** * * **
consensus_7391#0 TGTCCCAAATATTCGATCTGGGGATTGGTCGGATATTGGAGGTCGTCAATACATGGAAGA 480
consensus_7391#1 TG----AGAT-TGGGAAGGAAGGAAGGAAGGAAGGAAGCAAAGCATGCCCTTCTGGGTGC 367
** * ** * ** *** * * * * * * * *** *
consensus_7391#0 TACCCATGTGTGTATTACTGACCTAGCT----AAGAACTTTGGTTATCAATCGGTGGATA 536
consensus_7391#1 TTGCTTTGTGCACACGCCTCTTCCGTTTCTTGAAACACATGGAGTATTA-TTAGAAGTGA 426
* * **** * ** * * ** ** * * *** * * * * *
consensus_7391#0 ATGAAGCTATTTCCTTTTATGGGGTCTTTGATGGGCATGGTGGAAAAGATGCTGCCCATT 596
consensus_7391#1 TTGTGATTCTTTTTTCTTGTTTAATTATTACTG--CTAGCTAGTACTGATTGTGCCTAAA 484
** * *** * ** * * ** ** * * * * * *** **** *
consensus_7391#0 TTGTTCGTGATAATTTACCAAGGATCATTGTGGAAGATGCTGATTTTCCTCTTGAGCTTG 656
consensus_7391#1 AAAAAA------------------------------------------------------ 490
consensus_7391#0 AGAAAGTAGTAAGAAGATCCTTTGTTCATGCAGATAATCAGTTTGCAAAGACAACACTGT 716
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 CTTCTGGCACAACAGCACTTACAGCAATGATTTTCGGAAGGACTCTTCTGATTGCAAATG 776
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 CTGGAGATTGTAGGGCGGTTCTTTCACGGTGCGGCACTGCAATTGAAATGTCAGTGGACC 836
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 ACAGGCCTTGCAGCCTCAGCGAAAAACTGCGTGTAGAATCACTTGGTGGCTATGTCGACG 896
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 ATGGTTACCTCAACGGTTTGTTAGGAGTCACTAGAGCACTCGGTGACTGGCATCTTGAGG 956
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 GCATGAAAGAAGCTGGCAATCCAGGAGGTCCACTTAGTGCTGAACCAGAGCTAAAGATGA 1016
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 TCACACTGACAAAGGACGACGAGTTCTTGATAATTGGCAGCGACGGGATCTGGGACGTCT 1076
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 TCTCAAACCAAAACGTGGTGGACTTTGCACGGAGGCGCCTCCAAGAACACAACGATGTGA 1136
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 AGTCCTGCTGCAGGGAGATCGTTGAGGAGGCAATAAAGCGAGGCGCCACCGACAACTTAA 1196
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 CCGCGGTGTTGGTCTCCTTCCACCTGGAGGCTCCTCCCCAGGTCAGAGTGAGCCGACCCG 1256
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 GTAGGGTGGCGCGCAGCATTTCGGCTGAGGGGCTGAACAGCTTGAGGACACTCCTGAGAA 1316
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 ACCAATGATGGCCATCTTCTTTGCATTCTTGCTGCAATTTCTCTAGTATGTTGCATTGCC 1376
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 GAGTGTTAATTGTATGTAGTGATCTCGGCACCTCATTGTTGTTAGATGTTACCACCATTG 1436
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 TTGTGATGACACCAGCTATTATTCTTGTTGGTAATTAAGCCAACGAACATGAGTTCTGAG 1496
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 CTCTCAAATTGTGAGAAATTCTAAGCGGCTGTAACAAGTTGAGCTCTGTGAAGAAAGAAG 1556
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 TGAGTGCCCAAGCTCACAGTGTCATATTTTTCTCCTATTCTTGTCTGTAAATAAAAATGT 1616
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 CAGCTACTCAGCTCCTGGGTAATTGAACGTTGACCATGTAAAAGATACCCCCATTGAGTG 1676
consensus_7391#1 ------------------------------------------------------------
consensus_7391#0 AAATTGCCGCCAATTGGC 1694
consensus_7391#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||