These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 786 fasta sequence [AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATCCCAAAAAAAAAAGGTAAGTCCCGTCAACAAACAGTCTTTTCATCTTCCTCCATTGGCAGCCATTGCTAACACTCCAACACCTGAAAAACTCCTCATTTGGGGGTTAAGGCCTGAAAAATGGTGGCTTTGCCGGGGTCCGCGGGATGGGCAAAAATGTTGTCTATGGGGCCGGTGCCGGTGTTCTCTGCCTGGAAACCAATCTCCCATTAAGGGGAACATTNGCNAACCGCCCGTTCTTGATCTCCTTGGGTNCGCAGCTCCTTTGATCTTCTCCNGCAAACCGGTNCCCCCCCCAAACGGGGTTTAACCCCAAAACACCANGGTACCCGACTTNNGTGCCCGGTGAACTTCCCCTTCCCAANTTCNTGCCCCCCGGGGGATCCCTTATTCTAAAACGGCCCCCNCCNNNGGAAACCCCCTTTTTTTCCNTTATTAAGGGGTTATTTCNAANTTGNGTTATNTNGGCCTACCTNTTCCCNTTTTAANTNTTTCCCCCCCATCCCCCACCTTNAACCGAANTATTTTAACTGGGTGCCNGATTACTNNNCCNTATGNTGCTCCGCNNTCNTNGAACTTNTCCCNTTATNTACCCCCCCGGAAAGGGTNN] [-] EMBL CF299914 [AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAA ] [+] EMBL BE229058 [ TCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATCCCAAAAAAAAAAGGTAAGTCCCGTCAACAAACAGTCTTTTCATCTTCCTCCATTGGCAGCCATTGCTAACACTCCAACACCTGAAAAACTCCTCATTTGGGGGTTAAGGCCTGAAAAATGGTGGCTTTGCCGGGGTCCGCGGGATGGGCAAAAATGTTGTCTATGGGGCCGGTGCCGGTGTTCTCTGCCTGGAAACCAATCTCCCATTAAGGGGAACATTNGCNAACCGCCCGTTCTTGATCTCCTTGGGTNCGCAGCTCCTTTGATCTTCTCCNGCAAACCGGTNCCCCCCCCAAACGGGGTTTAACCCCAAAACACCANGGTACCCGACTTNNGTGCCCGGTGAACTTCCCCTTCCCAANTTCNTGCCCCCCGGGGGATCCCTTATTCTAAAACGGCCCCCNCCNNNGGAAACCCCCTTTTTTTCCNTTATTAAGGGGTTATTTCNAANTTGNGTTATNTNGGCCTACCTNTTCCCNTTTTAANTNTTTCCCCCCCATCCCCCACCTTNAACCGAANTATTTTAACTGGGTGCCNGATTACTNNNCCNTATGNTGCTCCGCNNTCNTNGAACTTNTCCCNTTATNTACCCCCCCGGAAAGGGTNN] consensusID : consensus_7394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 197 fasta sequence [ATACGCTACGTAACGGCATGACCATGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAGAGTATCAACTT-GTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCATAGCCTACTCCTTAAGTCCAT] [-] EMBL CF298477 [ATACGCTACGTAACGGCATGACCATGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAGAGTATCAACTT GTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCATAGCCTACTC ] [+] EMBL CF301859 [ TTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAAATATCAACTTGGTTTTTTACATCGGTTACATCATAGTACAGGTCCACAATCAACAAGGCATGCAGGGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCTTAAGTCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7394#0 ------------AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 48 consensus_7394#1 ATACGCTACGTAACGGCATGACCATGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 * * * * ** ******************************* consensus_7394#0 TTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATC 108 consensus_7394#1 TTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATC 120 ************************************************************ consensus_7394#0 AACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGC 168 consensus_7394#1 AACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCATAGC 180 ******************************************************** *** consensus_7394#0 CTACTCC--GATCCCAAAAAAAAAAGGTAAGTCCCGTCAACAAACAGTCTTTTCATCTTC 226 consensus_7394#1 CTACTCCTTAAGTCCAT------------------------------------------- 197 ******* * *** consensus_7394#0 CTCCATTGGCAGCCATTGCTAACACTCCAACACCTGAAAAACTCCTCATTTGGGGGTTAA 286 consensus_7394#1 ------------------------------------------------------------ consensus_7394#0 GGCCTGAAAAATGGTGGCTTTGCCGGGGTCCGCGGGATGGGCAAAAATGTTGTCTATGGG 346 consensus_7394#1 ------------------------------------------------------------ consensus_7394#0 GCCGGTGCCGGTGTTCTCTGCCTGGAAACCAATCTCCCATTAAGGGGAACATTNGCNAAC 406 consensus_7394#1 ------------------------------------------------------------ consensus_7394#0 CGCCCGTTCTTGATCTCCTTGGGTNCGCAGCTCCTTTGATCTTCTCCNGCAAACCGGTNC 466 consensus_7394#1 ------------------------------------------------------------ consensus_7394#0 CCCCCCCAAACGGGGTTTAACCCCAAAACACCANGGTACCCGACTTNNGTGCCCGGTGAA 526 consensus_7394#1 ------------------------------------------------------------ consensus_7394#0 CTTCCCCTTCCCAANTTCNTGCCCCCCGGGGGATCCCTTATTCTAAAACGGCCCCCNCCN 586 consensus_7394#1 ------------------------------------------------------------ consensus_7394#0 NNGGAAACCCCCTTTTTTTCCNTTATTAAGGGGTTATTTCNAANTTGNGTTATNTNGGCC 646 consensus_7394#1 ------------------------------------------------------------ consensus_7394#0 TACCTNTTCCCNTTTTAANTNTTTCCCCCCCATCCCCCACCTTNAACCGAANTATTTTAA 706 consensus_7394#1 ------------------------------------------------------------ consensus_7394#0 CTGGGTGCCNGATTACTNNNCCNTATGNTGCTCCGCNNTCNTNGAACTTNTCCCNTTATN 766 consensus_7394#1 ------------------------------------------------------------ consensus_7394#0 TACCCCCCCGGAAAGGGTNN 786 consensus_7394#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||