cluster # 7395

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Oryza sativa
cluster # 7395 cluster # 7395 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7395#0 length = 436 sequences # 3

consensus_7395#1 length = 354 sequences # 1

consensusID : consensus_7395#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 436
fasta sequence

                              [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT-CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATGTAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTTTCACCTTGCAAAAAAA]

[+] EMBL AU090601             [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATGTAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTTTCACCTTGCAAAAAAA]
[+] EMBL CB097104             [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATGTAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTTTC              ]
[+] EMBL AU082715             [                                                                                                                                                               TTAATTATCGTCATATATCATCCAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCNTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATANCGAGCCATGCATGTATGTAACAAAGTTTTCTCCAAGTACNTGCTCATCATNATCATATGAATAAACTTNATTTTTTTTCAaaaa         ]




>consensus_7395#0
ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGAC
TTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAG
ATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT
CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCT
TATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTC
TTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATG
TAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTT
TCACCTTGCAAAAAAA

consensusID : consensus_7395#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTTTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCATCAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAAAAAAAAAAAAA]

[+] EMBL AU184454             [ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTTTTCGCCGACTTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAGATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCATCAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCTTATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTCTTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAAAAAAAAAAAAA]




>consensus_7395#1
ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTTTTCGCCGAC
TTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAG
ATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT
CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCT
TATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTC
TTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7395#0      ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTCTTCGCCGAC 60
consensus_7395#1      ACCCGCGCCTACGTGCAGCGCCACGCCGGCGGCGGCTACAAGGACGAGTTTTTCGCCGAC 60
                      ************************************************** *********

consensus_7395#0      TTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAG 120
consensus_7395#1      TTCGCCGCCTCCATGGTCAAGATGGGCGGCGTCGAAGTGCTCACCGGCAGCCAGGGCGAG 120
                      ************************************************************

consensus_7395#0      ATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT 180
consensus_7395#1      ATCAGGAAGAAGTGCAACGTGGTTAACTAATCATCTCTCTTAATTATCGTCATATATCAT 180
                      ************************************************************

consensus_7395#0      CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCT 240
consensus_7395#1      CAGCTGCTCGCCGAGACTGTGATTATGGATTTCAGCTTTTGATTCCGGCCGTGACCATCT 240
                      ************************************************************

consensus_7395#0      TATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTC 300
consensus_7395#1      TATAATTAATTTCCATGTAGATCATTATCGTAAGATTTACCTGTCCCTTCTTTTTTTTTC 300
                      ************************************************************

consensus_7395#0      TTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAGCGAGCCATGCATGTATG 360
consensus_7395#1      TTGATTTCAATCACTTCATTAATTAATTGTTTTGTTTATATAAAAAAAAAAAAA------ 354
                      ******************************************   *   *   *      

consensus_7395#0      TAACAAAGTTTTCTCCAAGTACGTGCTCATCATGATCATATGAATAAACTTCATTTTTTT 420
consensus_7395#1      ------------------------------------------------------------
                                                                                  

consensus_7395#0      TCACCTTGCAAAAAAA 436
consensus_7395#1      ----------------