These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [AATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAGGAAGGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAAGTAAGTAACAAGTCCTACTCATCTAATTAGAAGTAACTTTGGATCCATCATTTCTATTCCCTCCATTTCATCTGTTTACTTTCTGCTATGATGCTACCATCTATTTCTACTGCCATCTTAGTTGACAGTAGTAGAAACGTAAAGAGA] [+] EMBL AK062961 [AATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAGGAAGGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAAGTAAGTAACAAGTCCTACTCATCTAATTAGAAGTAACTTTGGATCCATCATTTCTATTCCCTCCATTTCATCTGTTTACTTTCTGCTATGATGCTACCATCTATTTCTACTGCCATCTTAGTTGACAGTAGTAGAAACGTAAAGAGA] consensusID : consensus_7397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 593 fasta sequence [TCTGCTTCCTACACAACCCCCTTCAGGACTCTCTCCCCGTCAGTCAAAACATGGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAAAGAAAGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAACGAGGGGTGTTTTCTTTGCTGTCAAAGAAGTGTACTTAGATGATCAAGGGAAATACGACGATGCACAACAGTGTATTTTTCAGCTTCAGCAGGAAATTGCACTCCTGAGTCGTCTGCAACACAATAACATTGTACAGT] [+] EMBL CF323214 [TCTGCTTCCTACACAACCCCCTTCAGGACTCTCTCCCCGTCAGTCAAAACATGGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAAAGAAAGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAACGAGGGGTGTTTTCTTTGCTGTCAAAGAAGTGTACTTAGATGATCAAGGGAAATACGACGATGCACAACAGTGTATTTTTCAGCTTCAGCAGGAAATTGCACTCCTGAGTCGTCTGCAACACAATAACATTGTACAGT] [+] EMBL CF308552 [ GGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGAT ] consensusID : consensus_7397#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [AATGTCAACCTATGTACGAGAGGGAACCGTTGATTCACACAATGTGGTCATCGCGCTTGGTGTGAAAAAGCCCACGTGGCTGCGAAGCCTACCGTGTGCCGGATTTAGGACTGAACGCCTCTAAAGTCAGAATCCAAGCTGAGCAAGCGGCAGCCTGCAGCCCAGCCAGCCCGCCCCGACCCACAGTTAGGGGCAGCAAGCACACACACAAGGGCCCAGTGCCACACAGGCACAAGCCAGGCCCAGGCACGACAGCGCACGCAGGCCAGGCACAGCCTCGAAGCTCCCTTCACCAACGGGCGGCAGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTAAAAAAAAAA] [+] EMBL BI808471 [AATGTCAACCTATGTACGAGAGGGAACCGTTGATTCACACAATGTGGTCATCGCGCTTGGTGTGAAAAAGCCCACGTGGCTGCGAAGCCTACCGTGTGCCGGATTTAGGACTGAACGCCTCTAAAGTCAGAATCCAAGCTGAGCAAGCGGCAGCCTGCAGCCCAGCCAGCCCGCCCCGACCCACAGTTAGGGGCAGCAAGCACACACACAAGGGCCCAGTGCCACACAGGCACAAGCCAGGCCCAGGCACGACAGCGCACGCAGGCCAGGCACAGCCTCGAAGCTCCCTTCACCAACGGGCGGCAGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7397#0 AATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATC 60 consensus_7397#1 --------TCTGCTTCCTACACAACCCCCTTCAGGACTCTCTCCCCG-TCAGTCAAAACA 51 consensus_7397#2 -----------------------------------AATGTCAACCTA--TGTACGAGAGG 23 * * * * consensus_7397#0 CAGCC-CCGCGTCGCACGGATTCGTGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGG 119 consensus_7397#1 TGGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGG 111 consensus_7397#2 GAACCGTTGATTCACACAATGTGGTCATCGCGCTTGGTGTGAAAAAGCCCACGTGGCTGC 83 * ** * ** * * *** * * * ** * * consensus_7397#0 AGACCACGCCAAGCGT-GGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCT 178 consensus_7397#1 AGACCACGCCAAGCGT-GGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCT 170 consensus_7397#2 GAAGCCTACCGTGTGCCGGATTTAGGACTGAACGCCTCTAAA-GTCAGAATCCAA----- 137 * * ** * * *** * * * * * ** * * *** *** * consensus_7397#0 GCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAG 238 consensus_7397#1 GCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAG 230 consensus_7397#2 ---GCTGAGCAAGCGGCAGCC-TGCAGCC-CAGCCAGCCCGCCCCGACCCACAGTTAGGG 192 **** * ** *** * ** * * * *** * ** ** * * consensus_7397#0 GCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCG 298 consensus_7397#1 GCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCG 290 consensus_7397#2 GCAGCAAGCACACACACAAGGGCCCAGTGCCACACAGGC--------ACAAGCCAGGCCC 244 ** * * *** * *** ** * * * * consensus_7397#0 ACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAAC 358 consensus_7397#1 ACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAAC 350 consensus_7397#2 AGGCACGACAGCGCAC---GCAGGCCAGGCACAGCCTCGAAGCTCCCTTCACCAACGGGC 301 * * * ** * * *** * *** * ** * * ** ** *** * consensus_7397#0 GGGAGTAATGA----TGTTGGGAGGAGGAGGAG-GAAGGTCCGGTCCTGGAGTCGGGGGA 413 consensus_7397#1 GGGAGTAATGA----TGTTGGGAGGAGGAGGAAAGAAAGTCCGGTCCTGGAGTCGGGGGA 406 consensus_7397#2 GGCAGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCAGA 361 ** ** *** * * ** ** * ** ** * ** ** consensus_7397#0 GCTTCCTGGG-ACGTGGATCCTTTGGGATGGTGTTCGAGG--GGATCACCAAGTAAGTAA 470 consensus_7397#1 GCTTCCTGGG-ACGTGGATCCTTTGGGATGGTGTTCGAGG--GGATCACCAA-CGAGGGG 462 consensus_7397#2 GTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTAAAAAA 421 * *** * * ***** ** *** * * * * * * consensus_7397#0 CAAGTCCTACTCATCTAATTAGAAGTAACTTTGGATCCATCATTTCTATTCCCTCCATTT 530 consensus_7397#1 TGTTTTCTTTGCTGTCAA--AGAAGTGTACTTAGATG-ATCAAGGGAAATACGACGATGC 519 consensus_7397#2 AAAA-------------------------------------------------------- 425 consensus_7397#0 -CATCTGTTTACTTTCT-GCTATGATGCTACCATCTATTTCTACTGCCATCTTAGTTGAC 588 consensus_7397#1 ACAACAGTGTATTTTTCAGCTTCAGCAGGAAATTGCACTCCTGA-GTCGTCTG---CAAC 575 consensus_7397#2 ------------------------------------------------------------ consensus_7397#0 AGTAGTAGAAACGTAAAGAGA 609 consensus_7397#1 A-CAATAACATTGTACAGT-- 593 consensus_7397#2 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||