cluster # 7398

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Oryza sativa
cluster # 7398 cluster # 7398 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7398#0 length = 443 sequences # 3

consensus_7398#1 length = 379 sequences # 1

consensusID : consensus_7398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 443
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAACTCCTCCCGGGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTTTTGCAACAAAAGTTTTTGATCCCCGAAAAATTGGACCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATCGGATTTTCACCCCCCCCCAAAAGCAAATCAGTTCTTGTAGCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTTGCCGAACACAAAATCCCCCTGGTTTGTCCCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGG-ATAGAAGGCCTTTTGCCCCTTCACCACGTTTTCCGTTTTGCCCCCCCAGGCCTTGAACGTGCTTTGTTGGAAAACCCGGCCAAAGGAAAAGGACAAAACCCACGGT]

[+] EMBL CF317064             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAACTCCTCCCGGGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTTTTGCAACAAAAGTTTTTGATCCCCGAAAAATTGGACCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATCGGATTTTCACCCCCCCCCAAAAGCAAATCAGTCCTTGTAGCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTTGCCAAACACAAAATCCCCCTGGTTTGTACCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGG ATAGAAGGCCTTTTGCCCCTTAACCACGTTTTCCGTTTTGCCCCCCCAGGCCTTGAACGTGCTTTGTTGGAAAACCCGGCCAAAGGAAAAGGACAAAACCCACGGT]
[+] EMBL CF337068             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAACTACTCCCGGTGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTTTTGCAACAAAAGTTTTTGATCCCCGTAAAATTGGACCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATCGGATTTTCACCCCCCCCCAAAACCAAATCAGTTCTTGTAGCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTCGCCGAACACAAAATCACCCTGGTTTGTCCCAAGGGTACCCTCAAAGTTGGCCTT CCCCTGGGGAATA AAGGCCTTTTGCCCCTTCACCACTTTTTCCGTTTTGCC                                                                ]
[+] EMBL CF313363             [                TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAACTCCTCCCGGGGACGGGGTTTAATTTTTAAAAAGCCCGGGTTCAAATTTTTGGGACAAAAGTTTTTGATCCCCGAAAAATGGGCCCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTTGCCTCCGGGGGGTGTCCAATGGGTTTTTCCCCCCCCCCCAAAAACAAATCAGTTCTTGGAGCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTTGCCGAACACAAAATCCCCCTGGTTTGTCCCAAGGGGACCCCCAAAGTTGGCCTTGCCCCTGGGG AATGAAGGCCTTTTGCCCCTTCACCACGTTTTCCGTTTTGCCCCCCCAGGCCTTGAGCGTGCTTTGTTGG                                    ]




>consensus_7398#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAAC
TCCTCCCGGGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTTTTGCAACAAAAG
TTTTTGATCCCCGAAAAATTGGACCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTT
GCTTACGGGGGATGTCCAATCGGATTTTCACCCCCCCCCAAAAGCAAATCAGTTCTTGTA
GCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTTGCCGAACACAAAATCCCCCTGGTTTGT
CCCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGGATAGAAGGCCTTTTGCCCCTTCA
CCACGTTTTCCGTTTTGCCCCCCCAGGCCTTGAACGTGCTTTGTTGGAAAACCCGGCCAA
AGGAAAAGGACAAAACCCACGGT

consensusID : consensus_7398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTCCCGAGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTATTGGGAAAAAAGTTTTTGATCCCCGTAAAATTGGACCCTTGATACCCAAACCACCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATGGGATTTTCACCCCCCCCCAAAAGCAAATCAGTCCTTGTAGCCCTTGACGGGAAGGCTTTAAAAGGCCCCCTTGCCGAACACAAAATCACCCTGGTTTGTACCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGGATAAAGGCCTTTTGGGCCTTAACCACGTTTTCCGTTTTGCCGCCCCAGGCCTT]

[+] EMBL CF317197             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTCCCGAGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTATTGGGAAAAAAGTTTTTGATCCCCGTAAAATTGGACCCTTGATACCCAAACCACCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATGGGATTTTCACCCCCCCCCAAAAGCAAATCAGTCCTTGTAGCCCTTGACGGGAAGGCTTTAAAAGGCCCCCTTGCCGAACACAAAATCACCCTGGTTTGTACCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGGATAAAGGCCTTTTGGGCCTTAACCACGTTTTCCGTTTTGCCGCCCCAGGCCTT]




>consensus_7398#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTCCCGAGG
ACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTATTGGGAAAAAAGTTTTTGATCCC
CGTAAAATTGGACCCTTGATACCCAAACCACCCTCAAAACCCTAAATTTGCTTACGGGGG
ATGTCCAATGGGATTTTCACCCCCCCCCAAAAGCAAATCAGTCCTTGTAGCCCTTGACGG
GAAGGCTTTAAAAGGCCCCCTTGCCGAACACAAAATCACCCTGGTTTGTACCAAGGGTAC
CCTCAAAGTTGGCCTTGCCCCTGGGGATAAAGGCCTTTTGGGCCTTAACCACGTTTTCCG
TTTTGCCGCCCCAGGCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7398#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAAC 60
consensus_7398#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC-------- 52
                      ****************************************************        

consensus_7398#0      TCCTCCCGGGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTTTTGCAACAAAAG 120
consensus_7398#1      ---TCCCGAGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTATTGGGAAAAAAG 109
                         ***** ************************************** ***  * *****

consensus_7398#0      TTTTTGATCCCCGAAAAATTGGACCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTT 180
consensus_7398#1      TTTTTGATCCCCGTAAAATTGGACCCTTGATACCCAAACCACCCTCAAAACCCTAAATTT 169
                      ************* ************************** *******************

consensus_7398#0      GCTTACGGGGGATGTCCAATCGGATTTTCACCCCCCCCCAAAAGCAAATCAGTTCTTGTA 240
consensus_7398#1      GCTTACGGGGGATGTCCAATGGGATTTTCACCCCCCCCCAAAAGCAAATCAGTCCTTGTA 229
                      ******************** ******************************** ******

consensus_7398#0      GCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTTGCCGAACACAAAATCCCCCTGGTTTGT 300
consensus_7398#1      GCCCTTGACGGGAAGGCTTTAAAAGGCCCCCTTGCCGAACACAAAATCACCCTGGTTTGT 289
                      **************** ******************************* ***********

consensus_7398#0      CCCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGGATAGAAGGCCTTTTGCCCCTTCA 360
consensus_7398#1      ACCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGGATA-AAGGCCTTTTGGGCCTTAA 348
                       *************************************** ***********  **** *

consensus_7398#0      CCACGTTTTCCGTTTTGCCCCCCCAGGCCTTGAACGTGCTTTGTTGGAAAACCCGGCCAA 420
consensus_7398#1      CCACGTTTTCCGTTTTGCCGCCCCAGGCCTT----------------------------- 379
                      ******************* ***********                             

consensus_7398#0      AGGAAAAGGACAAAACCCACGGT 443
consensus_7398#1      -----------------------