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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_74#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1399 fasta sequence
[TGCAGTGTTGAGGATGACTAGCGACCAGCAACGATGCCACATCTCCAAAGCTCCCGATCACATCCGAAGCAGCAACCCGGAGCATTACAAGCCACTGGCCTTCCCCGTCGGCCCTTACCATGCCCGCTCCGGCGTGCCGGCGCCGGAGAAGGCCCAGAGGCTGAAGGAGCAATGCGTCGACGAGGTCGTCCAGCTGAGCGGCAGGAGCCGCCACGACTTGCTCGAGCAGATGAGGAGCGTGCTGGATCGAGCAAAGGAGTACTACGCCGACGAGATCGGCATGGACGACGAGGCGCTGGCGCAGATGCTCCTCCTCGACGGCTGCTTCGTCCTCGTCTCGCTCCGCGGGACGGAGCGGCTCAAGCAGCTGACTCCAGGATGGAAGGCGGAGGAGAGTACGGAGAGCTTGTTGTCGGAGAACTCGGACGATCGTTGCTCCGATTGCTCGGATCAGCAGGGCGACGAGGAGAATCAGCCACCCGCCGCCGACCACGTCCACCATCTGCTTCACCTCAGCCACATGTACCTGAGACCAAGGACCCGGCGCCAGAGCTCGCGTTGGAGCGGCGGCGGCGGCGCGACCGTGGGCCGGCTGCGCCGCGCGACGCAGCTCCGCGAGCTCATGGTGCGGCTCAAGAAGCTGGAGATCGGAGGCAAGGCGGCTCCGGCGGGCAGCATCCTGGACGTGGCGTTCCACGGCGGCGTGCTGGAGATCCCGCGGCTGGAGATCGACGGCGGCACGTGGAGGCAGATGGCGAACCTCATCCTGCTGGAGCAAGGGAGCCCGCACGTGGGGCTCTACGTCACGGCGTACTGCGCCTTCATGTCGCAGCTCGCCGGCACCGCCGAGGACGTGGCGCTGCTCTGCGAGTCCGGGGTCATCGAGCACCAGCTCGGCGGCGACGGCGACGTCGCCGACGGGCTCAGGAGGCTCTGCGACGGCATCATCTTCGACGCCGACGACGACGCATACAACTACCTCAGGCCGGTGTACCGGGCGGTCGAGGAGCACTGCCGCAGCCGCACGCTGAGGCTGCTCTGCTGGGTGCGAGGACACGCCAACTGCCCCAACCCATGGCTGCTTCTCGGCATCGTTGCCATCATCACTCTGCTTTGCTTCATCGTGCAGCAGCTGCAGCACGCCACTCTGAGGAAGAACGCAACTTAGGATGAGAAATAATTAACGGATCCGCCACGTTTGTTCACCGCGCGCTAGCTACGAGCACGGTAAGCAGTTCGCTAATCTCCTACCATTCGTACTCCTAATCTCCTATCAGTGTTTATGGCATCCTCAAGATTCCTATCAAGATTCTTATCAAGAGCTTTCGGTGTTTTGTTAGTGTAACATGCAGTACGTGTGATATGTGCCATGTTATATTTGTGTTTATGTAAAACAGAA]
[+] EMBL AK063548 [TGCAGTGTTGAGGATGACTAGCGACCAGCAACGATGCCACATCTCCAAAGCTCCCGATCACATCCGAAGCAGCAACCCGGAGCATTACAAGCCACTGGCCTTCCCCGTCGGCCCTTACCATGCCCGCTCCGGCGTGCCGGCGCCGGAGAAGGCCCAGAGGCTGAAGGAGCAATGCGTCGACGAGGTCGTCCAGCTGAGCGGCAGGAGCCGCCACGACTTGCTCGAGCAGATGAGGAGCGTGCTGGATCGAGCAAAGGAGTACTACGCCGACGAGATCGGCATGGACGACGAGGCGCTGGCGCAGATGCTCCTCCTCGACGGCTGCTTCGTCCTCGTCTCGCTCCGCGGGACGGAGCGGCTCAAGCAGCTGACTCCAGGATGGAAGGCGGAGGAGAGTACGGAGAGCTTGTTGTCGGAGAACTCGGACGATCGTTGCTCCGATTGCTCGGATCAGCAGGGCGACGAGGAGAATCAGCCACCCGCCGCCGACCACGTCCACCATCTGCTTCACCTCAGCCACATGTACCTGAGACCAAGGACCCGGCGCCAGAGCTCGCGTTGGAGCGGCGGCGGCGGCGCGACCGTGGGCCGGCTGCGCCGCGCGACGCAGCTCCGCGAGCTCATGGTGCGGCTCAAGAAGCTGGAGATCGGAGGCAAGGCGGCTCCGGCGGGCAGCATCCTGGACGTGGCGTTCCACGGCGGCGTGCTGGAGATCCCGCGGCTGGAGATCGACGGCGGCACGTGGAGGCAGATGGCGAACCTCATCCTGCTGGAGCAAGGGAGCCCGCACGTGGGGCTCTACGTCACGGCGTACTGCGCCTTCATGTCGCAGCTCGCCGGCACCGCCGAGGACGTGGCGCTGCTCTGCGAGTCCGGGGTCATCGAGCACCAGCTCGGCGGCGACGGCGACGTCGCCGACGGGCTCAGGAGGCTCTGCGACGGCATCATCTTCGACGCCGACGACGACGCATACAACTACCTCAGGCCGGTGTACCGGGCGGTCGAGGAGCACTGCCGCAGCCGCACGCTGAGGCTGCTCTGCTGGGTGCGAGGACACGCCAACTGCCCCAACCCATGGCTGCTTCTCGGCATCGTTGCCATCATCACTCTGCTTTGCTTCATCGTGCAGCAGCTGCAGCACGCCACTCTGAGGAAGAACGCAACTTAGGATGAGAAATAATTAACGGATCCGCCACGTTTGTTCACCGCGCGCTAGCTACGAGCACGGTAAGCAGTTCGCTAATCTCCTACCATTCGTACTCCTAATCTCCTATCAGTGTTTATGGCATCCTCAAGATTCCTATCAAGATTCTTATCAAGAGCTTTCGGTGTTTTGTTAGTGTAACATGCAGTACGTGTGATATGTGCCATGTTATATTTGTGTTTATGTAAAACAGAA]
consensusID : consensus_74#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1172 fasta sequence
[ACAAGCCACTGGCCTTCCCCGTCGGCCCTTACCATGCCCGCTCCGGCGTGCCGGCGCCGGAGAAGGCCCAGAGGCTGAAGGAGCAATGCGTCGACGAGGTCGTCCAGCTGAGCGGCAGGAGCCGCCACGACTTGCTCGAGCAGATGAGGAGCGTGCTGGATCGAGCAAAGGAGTACTACGCCGACGAGATCGGCATGGACGACGAGGCGCTGGCGCAGATGCTCCTCCTCGACGGCTGCTTCGTCCTCGTCTCGCTCCGCGGGACGGAGCGGCTCAAGCAGCTGACTCCAGGATGGAAGGCGGAGGAGAGTACGGAGAGCTTGTTGTCGGAGAACTCGGACGATCGTTGCTCCGATTGCTCGGATCAGCAGGGCGACGAGGAGAATCAGATCGCCGCGGCGAACAACGGCGGCGGTGGCGGCGACGATAGCTGGCACCATTTCAACGTCGCGCGTGATCTCTTCCTCGCGGAGAACCAGATCCCGTTCTTCGTGGTGCAGAAGATCTACGAGCTTCTCGTCAAGAACCGTCCATACGCGGAGCGCGGCGTCGTGGGCGCCGTGGAGGCGTACGTGCGGGAGGTGATGGCCGTGTACGCGGATGGAGCCGGCGCGCAGGCGCAGCCACCCGCCGCCGACCACGTCCACCATCTGCTTCACCTCAGCCACATGTACCTGAGACCAAGGACCCGGCGCCAGAGCTCGCGTTGGAGCGGCGGCGGCGGCGCGACCGTGGGCCGGCTGCGCCGCGCGACGCAGCTCCGCGAGCTCATGGTGCGGCTCAAGAAGCTGGAGATCGGAGGCAAGGCGGCTCCGGCGGGCAGCATCCTGGACGTGGCGTTCCACGGCGGCGTGCTGGAGATCCCGCGGCTGGAGATCGACGGCGGCACGTGGAGGCAGATGGCGAACCTCATCCTGCTGGAGCAAGGGAGCCCGCACGTGGGGCTCTACGTCACGGCGTACTGCGCCTTCATGTCGCAGCTCGCCGGCACCGCCGAGGACGTGGCGCTGCTCTGCGAGTCCGGGGTCATCGAGCACCAGCTCGGCGGCGACGGCGACGTCGCCGACGGGCTCAGGAGGCTCTGCGACGGCATCATCTTCGACGCCGACGACGACGCATACAACTACCTCAGGCCGGTGTACCGGGCGGTCGAGGAGCACTGCCGCAGCCGC]
[+] EMBL AK100863 [ACAAGCCACTGGCCTTCCCCGTCGGCCCTTACCATGCCCGCTCCGGCGTGCCGGCGCCGGAGAAGGCCCAGAGGCTGAAGGAGCAATGCGTCGACGAGGTCGTCCAGCTGAGCGGCAGGAGCCGCCACGACTTGCTCGAGCAGATGAGGAGCGTGCTGGATCGAGCAAAGGAGTACTACGCCGACGAGATCGGCATGGACGACGAGGCGCTGGCGCAGATGCTCCTCCTCGACGGCTGCTTCGTCCTCGTCTCGCTCCGCGGGACGGAGCGGCTCAAGCAGCTGACTCCAGGATGGAAGGCGGAGGAGAGTACGGAGAGCTTGTTGTCGGAGAACTCGGACGATCGTTGCTCCGATTGCTCGGATCAGCAGGGCGACGAGGAGAATCAGATCGCCGCGGCGAACAACGGCGGCGGTGGCGGCGACGATAGCTGGCACCATTTCAACGTCGCGCGTGATCTCTTCCTCGCGGAGAACCAGATCCCGTTCTTCGTGGTGCAGAAGATCTACGAGCTTCTCGTCAAGAACCGTCCATACGCGGAGCGCGGCGTCGTGGGCGCCGTGGAGGCGTACGTGCGGGAGGTGATGGCCGTGTACGCGGATGGAGCCGGCGCGCAGGCGCAGCCACCCGCCGCCGACCACGTCCACCATCTGCTTCACCTCAGCCACATGTACCTGAGACCAAGGACCCGGCGCCAGAGCTCGCGTTGGAGCGGCGGCGGCGGCGCGACCGTGGGCCGGCTGCGCCGCGCGACGCAGCTCCGCGAGCTCATGGTGCGGCTCAAGAAGCTGGAGATCGGAGGCAAGGCGGCTCCGGCGGGCAGCATCCTGGACGTGGCGTTCCACGGCGGCGTGCTGGAGATCCCGCGGCTGGAGATCGACGGCGGCACGTGGAGGCAGATGGCGAACCTCATCCTGCTGGAGCAAGGGAGCCCGCACGTGGGGCTCTACGTCACGGCGTACTGCGCCTTCATGTCGCAGCTCGCCGGCACCGCCGAGGACGTGGCGCTGCTCTGCGAGTCCGGGGTCATCGAGCACCAGCTCGGCGGCGACGGCGACGTCGCCGACGGGCTCAGGAGGCTCTGCGACGGCATCATCTTCGACGCCGACGACGACGCATACAACTACCTCAGGCCGGTGTACCGGGCGGTCGAGGAGCACTGCCGCAGCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_74#0 TGCAGTGTTGAGGATGACTAGCGACCAGCAACGATGCCACATCTCCAAAGCTCCCGATCA 60
consensus_74#1 ------------------------------------------------------------
consensus_74#0 CATCCGAAGCAGCAACCCGGAGCATTACAAGCCACTGGCCTTCCCCGTCGGCCCTTACCA 120
consensus_74#1 --------------------------ACAAGCCACTGGCCTTCCCCGTCGGCCCTTACCA 34
**********************************
consensus_74#0 TGCCCGCTCCGGCGTGCCGGCGCCGGAGAAGGCCCAGAGGCTGAAGGAGCAATGCGTCGA 180
consensus_74#1 TGCCCGCTCCGGCGTGCCGGCGCCGGAGAAGGCCCAGAGGCTGAAGGAGCAATGCGTCGA 94
************************************************************
consensus_74#0 CGAGGTCGTCCAGCTGAGCGGCAGGAGCCGCCACGACTTGCTCGAGCAGATGAGGAGCGT 240
consensus_74#1 CGAGGTCGTCCAGCTGAGCGGCAGGAGCCGCCACGACTTGCTCGAGCAGATGAGGAGCGT 154
************************************************************
consensus_74#0 GCTGGATCGAGCAAAGGAGTACTACGCCGACGAGATCGGCATGGACGACGAGGCGCTGGC 300
consensus_74#1 GCTGGATCGAGCAAAGGAGTACTACGCCGACGAGATCGGCATGGACGACGAGGCGCTGGC 214
************************************************************
consensus_74#0 GCAGATGCTCCTCCTCGACGGCTGCTTCGTCCTCGTCTCGCTCCGCGGGACGGAGCGGCT 360
consensus_74#1 GCAGATGCTCCTCCTCGACGGCTGCTTCGTCCTCGTCTCGCTCCGCGGGACGGAGCGGCT 274
************************************************************
consensus_74#0 CAAGCAGCTGACTCCAGGATGGAAGGCGGAGGAGAGTACGGAGAGCTTGTTGTCGGAGAA 420
consensus_74#1 CAAGCAGCTGACTCCAGGATGGAAGGCGGAGGAGAGTACGGAGAGCTTGTTGTCGGAGAA 334
************************************************************
consensus_74#0 CTCGGACGATCGTTGCTCCGATTGCTCGGATCAGCAGGGCGACGAGGAGAATCAG----- 475
consensus_74#1 CTCGGACGATCGTTGCTCCGATTGCTCGGATCAGCAGGGCGACGAGGAGAATCAGATCGC 394
*******************************************************
consensus_74#0 ------------------------------------------------------------
consensus_74#1 CGCGGCGAACAACGGCGGCGGTGGCGGCGACGATAGCTGGCACCATTTCAACGTCGCGCG 454
consensus_74#0 ------------------------------------------------------------
consensus_74#1 TGATCTCTTCCTCGCGGAGAACCAGATCCCGTTCTTCGTGGTGCAGAAGATCTACGAGCT 514
consensus_74#0 ------------------------------------------------------------
consensus_74#1 TCTCGTCAAGAACCGTCCATACGCGGAGCGCGGCGTCGTGGGCGCCGTGGAGGCGTACGT 574
consensus_74#0 -------------------------------------------------CCACCCGCCGC 486
consensus_74#1 GCGGGAGGTGATGGCCGTGTACGCGGATGGAGCCGGCGCGCAGGCGCAGCCACCCGCCGC 634
***********
consensus_74#0 CGACCACGTCCACCATCTGCTTCACCTCAGCCACATGTACCTGAGACCAAGGACCCGGCG 546
consensus_74#1 CGACCACGTCCACCATCTGCTTCACCTCAGCCACATGTACCTGAGACCAAGGACCCGGCG 694
************************************************************
consensus_74#0 CCAGAGCTCGCGTTGGAGCGGCGGCGGCGGCGCGACCGTGGGCCGGCTGCGCCGCGCGAC 606
consensus_74#1 CCAGAGCTCGCGTTGGAGCGGCGGCGGCGGCGCGACCGTGGGCCGGCTGCGCCGCGCGAC 754
************************************************************
consensus_74#0 GCAGCTCCGCGAGCTCATGGTGCGGCTCAAGAAGCTGGAGATCGGAGGCAAGGCGGCTCC 666
consensus_74#1 GCAGCTCCGCGAGCTCATGGTGCGGCTCAAGAAGCTGGAGATCGGAGGCAAGGCGGCTCC 814
************************************************************
consensus_74#0 GGCGGGCAGCATCCTGGACGTGGCGTTCCACGGCGGCGTGCTGGAGATCCCGCGGCTGGA 726
consensus_74#1 GGCGGGCAGCATCCTGGACGTGGCGTTCCACGGCGGCGTGCTGGAGATCCCGCGGCTGGA 874
************************************************************
consensus_74#0 GATCGACGGCGGCACGTGGAGGCAGATGGCGAACCTCATCCTGCTGGAGCAAGGGAGCCC 786
consensus_74#1 GATCGACGGCGGCACGTGGAGGCAGATGGCGAACCTCATCCTGCTGGAGCAAGGGAGCCC 934
************************************************************
consensus_74#0 GCACGTGGGGCTCTACGTCACGGCGTACTGCGCCTTCATGTCGCAGCTCGCCGGCACCGC 846
consensus_74#1 GCACGTGGGGCTCTACGTCACGGCGTACTGCGCCTTCATGTCGCAGCTCGCCGGCACCGC 994
************************************************************
consensus_74#0 CGAGGACGTGGCGCTGCTCTGCGAGTCCGGGGTCATCGAGCACCAGCTCGGCGGCGACGG 906
consensus_74#1 CGAGGACGTGGCGCTGCTCTGCGAGTCCGGGGTCATCGAGCACCAGCTCGGCGGCGACGG 1054
************************************************************
consensus_74#0 CGACGTCGCCGACGGGCTCAGGAGGCTCTGCGACGGCATCATCTTCGACGCCGACGACGA 966
consensus_74#1 CGACGTCGCCGACGGGCTCAGGAGGCTCTGCGACGGCATCATCTTCGACGCCGACGACGA 1114
************************************************************
consensus_74#0 CGCATACAACTACCTCAGGCCGGTGTACCGGGCGGTCGAGGAGCACTGCCGCAGCCGCAC 1026
consensus_74#1 CGCATACAACTACCTCAGGCCGGTGTACCGGGCGGTCGAGGAGCACTGCCGCAGCCGC-- 1172
**********************************************************
consensus_74#0 GCTGAGGCTGCTCTGCTGGGTGCGAGGACACGCCAACTGCCCCAACCCATGGCTGCTTCT 1086
consensus_74#1 ------------------------------------------------------------
consensus_74#0 CGGCATCGTTGCCATCATCACTCTGCTTTGCTTCATCGTGCAGCAGCTGCAGCACGCCAC 1146
consensus_74#1 ------------------------------------------------------------
consensus_74#0 TCTGAGGAAGAACGCAACTTAGGATGAGAAATAATTAACGGATCCGCCACGTTTGTTCAC 1206
consensus_74#1 ------------------------------------------------------------
consensus_74#0 CGCGCGCTAGCTACGAGCACGGTAAGCAGTTCGCTAATCTCCTACCATTCGTACTCCTAA 1266
consensus_74#1 ------------------------------------------------------------
consensus_74#0 TCTCCTATCAGTGTTTATGGCATCCTCAAGATTCCTATCAAGATTCTTATCAAGAGCTTT 1326
consensus_74#1 ------------------------------------------------------------
consensus_74#0 CGGTGTTTTGTTAGTGTAACATGCAGTACGTGTGATATGTGCCATGTTATATTTGTGTTT 1386
consensus_74#1 ------------------------------------------------------------
consensus_74#0 ATGTAAAACAGAA 1399
consensus_74#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||