These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [CCGCGCGCCATATCGCCACCGCCACCGCCCACCCGAAACCTCCCGCTCCTCTCGAACCTTTCCGAGGCGGCGAAACCCCCACTCCCCGCCGCGCTGCGCCGCGCCGCCGCGCCCTCTCCTCCCGGATCTCGCCGCCACGCGGCTGCGGGGTGGTCGGGGGTTCAAGGCGTACGGGTGGCGCGGCTAAATCCGCGGCGCCGCATTTGGTTGGGGGGATATGCCCAATTCTGTATGCGGCCGCCGGATTTGAGCGGGCGGAAGCGGTGGGCGGGCGAGCCGGCGAACCACTCCTCGAGCGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGTTCAACGAGCTTGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGTTTATCTTAATGAAATTTGGTCGGCCTTGCTGGCCGACCTGGCAAAAAAATATATTTCCCCCTCCAGTTGTTAAAAATCTTAAGATACTAGCAGCATGTTCTTTTGAATTGTATTTATAGGTTTTTATTTTATTTTTCGTTGCATACAAGGCTAGTTCTCTATACATATTAGA] [+] EMBL AK071573 [CCGCGCGCCATATCGCCACCGCCACCGCCCACCCGAAACCTCCCGCTCCTCTCGAACCTTTCCGAGGCGGCGAAACCCCCACTCCCCGCCGCGCTGCGCCGCGCCGCCGCGCCCTCTCCTCCCGGATCTCGCCGCCACGCGGCTGCGGGGTGGTCGGGGGTTCAAGGCGTACGGGTGGCGCGGCTAAATCCGCGGCGCCGCATTTGGTTGGGGGGATATGCCCAATTCTGTATGCGGCCGCCGGATTTGAGCGGGCGGAAGCGGTGGGCGGGCGAGCCGGCGAACCACTCCTCGAGCGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGTTCAACGAGCTTGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGTTTATCTTAATGAAATTTGGTCGGCCTTGCTGGCCGACCTGGCAAAAAAATATATTTCCCCCTCCAGTTGTTAAAAATCTTAAGATACTAGCAGCATGTTCTTTTGAATTGTATTTATAGGTTTTTATTTTATTTTTCGTTGCATACAAGGCTAGTTCTCTATACATATTAGA] consensusID : consensus_7403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 470 fasta sequence [CGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGTTCAGACTGAGCATGCTCTCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGGGAGTATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAACGAGCTTGCTTCACCTTCGTCTG-GTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGT] [+] EMBL CF303816 [CGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGTTCAGACTGAGCATGCTCTCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGGGAGTATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAACGAGCTTGCTTCACCTTCGTCTGNGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGT] [+] EMBL CF304266 [CGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGTTCAGACTGAGCATGCTCTCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGGGAGTATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAACGAGCTTGCTTCACCTTCGTCTG GTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGGAACCATT ] [+] EMBL CF304953 [CGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGTTCAGACTGAGCATGCTCTCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGGGAGTATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAACGAGCTTGCTTCACCTTCGTCTG GTTGCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7403#0 CCGCGCGCCATATCGCCACCGCCACCGCCCACCCGAAACCTCCCGCTCCTCTCGAACCTT 60 consensus_7403#1 ------------------------------------------------------------ consensus_7403#0 TCCGAGGCGGCGAAACCCCCACTCCCCGCCGCGCTGCGCCGCGCCGCCGCGCCCTCTCCT 120 consensus_7403#1 ------------------------------------------------------------ consensus_7403#0 CCCGGATCTCGCCGCCACGCGGCTGCGGGGTGGTCGGGGGTTCAAGGCGTACGGGTGGCG 180 consensus_7403#1 -------------------------------------------------------CGGGG 5 ** * consensus_7403#0 CGGCTAAATCCGCGGCGCCGCATTTGGTTGGGGGGATATGCCCAATTCTGTATGCGGCCG 240 consensus_7403#1 CGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGT----- 60 ** * * * * * *** *** **** ** * ***** * * consensus_7403#0 CCGGATTTGAGCGGGCGGAAGCGGTGGGCGGGCGAGCCGGCGAACCACTCCTCGAGCGGG 300 consensus_7403#1 TCAGACT-GAGCATGCTC--TCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGG 117 * ** * **** ** * * * * * ** * * * **** ** consensus_7403#0 GCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGTTCAAC 360 consensus_7403#1 GAGT--ATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAAC 175 * * * * * * * * *** * * * * ********* consensus_7403#0 GAGCTTGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTT 420 consensus_7403#1 GAGCTTGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTT 235 ************************************************************ consensus_7403#0 TGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCG 480 consensus_7403#1 TGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCG 295 ************************************************************ consensus_7403#0 CAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCT 540 consensus_7403#1 CAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCT 355 ************************************************************ consensus_7403#0 TTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTC 600 consensus_7403#1 TTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTC 415 ************************************************************ consensus_7403#0 GCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGTTTATC 660 consensus_7403#1 GCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGT----- 470 ******************************************************* consensus_7403#0 TTAATGAAATTTGGTCGGCCTTGCTGGCCGACCTGGCAAAAAAATATATTTCCCCCTCCA 720 consensus_7403#1 ------------------------------------------------------------ consensus_7403#0 GTTGTTAAAAATCTTAAGATACTAGCAGCATGTTCTTTTGAATTGTATTTATAGGTTTTT 780 consensus_7403#1 ------------------------------------------------------------ consensus_7403#0 ATTTTATTTTTCGTTGCATACAAGGCTAGTTCTCTATACATATTAGA 827 consensus_7403#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||